|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069018 ID=TCONS_00069018|Name=TCONS_00069018|organism=Clytia hemisphaerica|type=transcript|length=1549bp
cgttgttgttgttgttagttgttttgtgttttttttcgaTCTTGACatgg
aaagatcagttcatTTAAAAGTTCATCCTTACTTTTCTTCAATTAATGTT
ATAATCTACCAAACAAAAAACCCTCCTGGTGGTATCCTATCAATTAAAAG
AGAGATTGagacagaaaatctttttaatgGTGTACCAGCAAAAGAAATGC
TGTTTTTTGGAGAAAGAGATTCGGTGACACCTTTAAAAGATAATACAAGA
TTTCATAAACATGGGGAAGTCGTAATATACCTTTGTTATGCTAAAGCATT
TGAGTTGTTGAATTCTGCTAACGAGAATGTGACTTTGGAGAAGGAAGTTA
ACAATTTTGGTCAATCAATAATCaaagtaaaagcttttgggACCAAtcgt
tttgtattttacatgtctGCTGCCCAGCATCAGGCTGATAATGTGAAAGG
TAACATTGAacgtacccagctggcacacaacgttgttttgacgtttgtct
aacgttcacaacgtccatataacgttatatgaacgttgaaacaacgttgt
gtgccagacGGGTAAGATTGGAATCCCATCTAAAAATCTTATCttgtttt
ataaaagaaatgatGCTTTATCCAATGAATTCTCAAGATATTACGGatct
tataataataataataatgatagcACTGCAATATACGTAATGGCATATTG
CGATGGAGACTCTCATTTTAATCATACATGTCAAAAATTTGGAATTAAAT
ACATTGGTCCACTCAAGATTCGTTCCTTAACTATGGAGGACACTCTAACC
GATATTCCTCACATTGACTCAGTGGTAGACGTCAAAAGATATATCCGTGA
AAGACAAAATATACCGATATACAGACAAACCTTGATGTTTCAAGGAGATT
CAATCGATAATGACCTTGAACATATTTCCAGTATTTTCTTGAAAGTTGAT
TCAGAAAAAGAATTTATATTTAATTTGTTGATCACCAATTTAGACCAGCC
TTTTGATGTCAAAATAAGATATACATATCATATTAATTTGTATGCACCTG
TTACCATTCAAATCTCTGACACTGTTGCTATTATCAAACTCAAATTCCTA
GAAGAACATAACCCACGACTTAGCATTAGGCCATTCGGTCAGAATCTAca
agaaaatatcaagaaatataAACTCGATCCTAGACCACTGGATTGCTACA
AACTCCACCTTGGCAACGAGACATTAGAATTAGAGAATAACAAAACTGCT
CAGGATTACAATCTCGATTCTTACAGTGAACTGGTCTTGACAAAAAGTAA
ATTAATAAGATTCCATTTCAAAAACAGTGAAAACGTTATTGAAAAATCTA
TATCGATTTGGCCTGGTATAACTGATGCACGTGAAGAATATAAAAACTTC
AAGACAACATTGTGAAGCTTTTGTAAGGAATATTCAGTCAGGAAGAAGAA
TATTCGAATTATACTCGAATCAAGTGAAGATGTTATTGAAAAACCATTGG
AAAGCTTTAAGCATTGGGAAGGTTATGGTTGTCGGAGCAAAGACATTAT Run BLAST on NCBI protein sequence of TCONS_00069018-protein >TCONS_00069018-protein ID=TCONS_00069018-protein|Name=TCONS_00069018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MAYCDGDSHFNHTCQKFGIKYIGPLKIRSLTMEDTLTDIPHIDSVVDVKR
YIRERQNIPIYRQTLMFQGDSIDNDLEHISSIFLKVDSEKEFIFNLLITN
LDQPFDVKIRYTYHINLYAPVTIQISDTVAIIKLKFLEEHNPRLSIRPFG
QNLQENIKKYKLDPRPLDCYKLHLGNETLELENNKTAQDYNLDSYSELVL
TKSKLIRFHFKNSENVIEKSISIWPGITDAREEYKNFKTTL Run BLAST on NCBI transcript from alignment at scaffold_491:121525..123073 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069018 ID=TCONS_00069018|Name=TCONS_00069018|organism=Clytia hemisphaerica|type=transcript|length=1549bp|location=Sequence derived from alignment at scaffold_491:121525..123073 (Clytia hemisphaerica)
ATAATGTCTTTGCTCCGACAACCATAACCTTCCCAATGCTTAAAGCTTTC
CAATGGTTTTTCAATAACATCTTCACTTGATTCGAGTATAATTCGAATAT
TCTTCTTCCTGACTGAATATTCCTTACAAAAGCTTCACAATGTTGTCTTG
AAGTTTTTATATTCTTCACGTGCATCAGTTATACCAGGCCAAATCGATAT
AGATTTTTCAATAACGTTTTCACTGTTTTTGAAATGGAATCTTATTAATT
TACTTTTTGTCAAGACCAGTTCACTGTAAGAATCGAGATTGTAATCCTGA
GCAGTTTTGTTATTCTCTAATTCTAATGTCTCGTTGCCAAGGTGGAGTTT
GTAGCAATCCAGTGGTCTAGGATCGAGTTtatatttcttgatattttctt
gTAGATTCTGACCGAATGGCCTAATGCTAAGTCGTGGGTTATGTTCTTCT
AGGAATTTGAGTTTGATAATAGCAACAGTGTCAGAGATTTGAATGGTAAC
AGGTGCATACAAATTAATATGATATGTATATCTTATTTTGACATCAAAAG
GCTGGTCTAAATTGGTGATCAACAAATTAAATATAAATTCTTTTTCTGAA
TCAACTTTCAAGAAAATACTGGAAATATGTTCAAGGTCATTATCGATTGA
ATCTCCTTGAAACATCAAGGTTTGTCTGTATATCGGTATATTTTGTCTTT
CACGGATATATCTTTTGACGTCTACCACTGAGTCAATGTGAGGAATATCG
GTTAGAGTGTCCTCCATAGTTAAGGAACGAATCTTGAGTGGACCAATGTA
TTTAATTCCAAATTTTTGACATGTATGATTAAAATGAGAGTCTCCATCGC
AATATGCCATTACGTATATTGCAGTgctatcattattattattattataa
gatCCGTAATATCTTGAGAATTCATTGGATAAAGCatcatttcttttata
aaacaaGATAAGATTTTTAGATGGGATTCCAATCTTACCCgtctggcaca
caacgttgtttcaacgttcatataacgttatatggacgttgtgaacgtta
gacaaacgtcaaaacaacgttgtgtgccagctgggtacgtTCAATGTTAC
CTTTCACATTATCAGCCTGATGCTGGGCAGCagacatgtaaaatacaaaa
cgaTTGGTcccaaaagcttttactttGATTATTGATTGACCAAAATTGTT
AACTTCCTTCTCCAAAGTCACATTCTCGTTAGCAGAATTCAACAACTCAA
ATGCTTTAGCATAACAAAGGTATATTACGACTTCCCCATGTTTATGAAAT
CTTGTATTATCTTTTAAAGGTGTCACCGAATCTCTTTCTCCAAAAAACAG
CATTTCTTTTGCTGGTACACcattaaaaagattttctgtctCAATCTCTC
TTTTAATTGATAGGATACCACCAGGAGGGTTTTTTGTTTGGTAGATTATA
ACATTAATTGAAGAAAAGTAAGGATGAACTTTTAAatgaactgatctttc
catGTCAAGAtcgaaaaaaaacacaaaacaactaacaacaacaacaacg Coding sequence (CDS) from alignment at scaffold_491:121525..123073 >TCONS_00069018 ID=TCONS_00069018|Name=TCONS_00069018|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_491:121525..123073 (Clytia hemisphaerica)
TCACAATGTTGTCTTGAAGTTTTTATATTCTTCACGTGCATCAGTTATAC
CAGGCCAAATCGATATAGATTTTTCAATAACGTTTTCACTGTTTTTGAAA
TGGAATCTTATTAATTTACTTTTTGTCAAGACCAGTTCACTGTAAGAATC
GAGATTGTAATCCTGAGCAGTTTTGTTATTCTCTAATTCTAATGTCTCGT
TGCCAAGGTGGAGTTTGTAGCAATCCAGTGGTCTAGGATCGAGTTtatat
ttcttgatattttcttgTAGATTCTGACCGAATGGCCTAATGCTAAGTCG
TGGGTTATGTTCTTCTAGGAATTTGAGTTTGATAATAGCAACAGTGTCAG
AGATTTGAATGGTAACAGGTGCATACAAATTAATATGATATGTATATCTT
ATTTTGACATCAAAAGGCTGGTCTAAATTGGTGATCAACAAATTAAATAT
AAATTCTTTTTCTGAATCAACTTTCAAGAAAATACTGGAAATATGTTCAA
GGTCATTATCGATTGAATCTCCTTGAAACATCAAGGTTTGTCTGTATATC
GGTATATTTTGTCTTTCACGGATATATCTTTTGACGTCTACCACTGAGTC
AATGTGAGGAATATCGGTTAGAGTGTCCTCCATAGTTAAGGAACGAATCT
TGAGTGGACCAATGTATTTAATTCCAAATTTTTGACATGTATGATTAAAA
TGAGAGTCTCCATCGCAATATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069018-exon-scaffold_491-1491911889:121525..123073 | TCONS_00069018-exon-scaffold_491-1491911889:121525..123073 | Clytia hemisphaerica | exon |
| TCONS_00069018-exon-scaffold_491-1510915933:121525..123073 | TCONS_00069018-exon-scaffold_491-1510915933:121525..123073 | Clytia hemisphaerica | exon |
| TCONS_00069018-exon-scaffold_491-1575043694:121525..123073 | TCONS_00069018-exon-scaffold_491-1575043694:121525..123073 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:121525..123073 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
