TCONS_00069134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069134
Unique NameTCONS_00069134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069134 ID=TCONS_00069134|Name=TCONS_00069134|organism=Clytia hemisphaerica|type=transcript|length=2679bp
TTACACTATACCCTGATTccatataaaagcattcttcattctataattga
gattaaatttttatttagctTTTGTTGCTCTAaatcctttcaatcaacca
aaattcattcaaaactaaAGCCGAACAAACAGCATCAAGTCTTAGCAGAT
CTTAGATTTTTTTTAGTCGtgataaAATTTTTCTGTACATAACATTCAAC
ATATAGGCTATGTTACAAAGACTCTATGCGTGCCTAATACAATGAATTTC
TTATCTAGCCTAGTTTATCAactagttttatgaatttgatacattattcc
aatttagttcaagaaactaaatttacgttgtgttagaatgataaaaactt
gttttcattttcaggagtcTAAAGTGTGGTACATAATATAAGGGATTAAT
AAgaggaatgttctttgaataaaaacatccacagaTTTTGTTTAGCGTAC
CTTGTATGCAGTATCCTATGAGTATAACTTCTTGCATTTttggggggtgg
gtccccccttttttagaaaattggggttTTCAAGTTGGTNTATGCAGTAT
CCTCTGCATATAACTTCTTGCATTTttggggggtgggtcccccctttttt
agaaaattggggttttcaagttggtattgataccaatttaggggggtggt
ggtgtctactactttcaaatctcaaaaagtaaggtttttgggccctgggt
tggtatcctggaccctgaccccccccTGAAGAAAGAACAATTGTTGATAT
CTgattttttaacaataaaatcTTTACTCTTTCTGGGTAGGAACCATCGA
ATTTCTAAGTCATCATTGTTTTTAATCTAGATATTTTAGGTAAGTTTCCT
TAAGGTTATAAATCTGATTGGCATCTTTTGCACATAAGAATAATATTGTC
TTCAAAATGAGGGGTCTCAAAAGTGAGAAATAATAACAACATAAAGGATA
AGTGAGAGATTGTATTTTGTACATACAATGTTATGCTAAGTAATATTTTC
ATTGGTAATTTTATGCATCATgttctttttaatttgttaaaagaaaaaag
tttacttttgatagaatttagTAATGTGTTTAaactgattttttattttg
aaaatgatgtttGAAATAATCTCTCATAAAGGTATTAAATTAATgaatta
tattatttttccatgagtatattttgataaatttcctCCTGTTGATTATA
TTTCGCATGGATTAACTATTATCTGATTTTCTTGAGTTTTTTGCCATAGT
AAATTTACACAATCCAAACCAAAAGTTTAAGATTAACTTTGTCCCTAGTC
CCTAGGAAAAATGATTAGGTCATAAGGTCATAGGCTGANATAGTAAATTT
ACACAATCCAAACCAAAAGTTTAAGATTAACTTTGTCCCTAGTCCCTAGG
AAAAATGATTAGGTTATATAAGGTCATAGGCTGAGATATGGATTTTAGTC
CAAGAGAAAGTGATCTGATTCTTTGTTTGAcatgttatttattttttact
ttagtgAAAAGAAAACATCTAGTAAATCAAACACAAGTAAAGGATAAAAT
TCAGTCATTTTAgTGAATTTCTTATATTCTTTCAACATGTCTCGGTCCAT
TATTGACACCTCAGCATGTGGGTTCATGAAGGCTGTTGTTTATCAGTTAA
ATTGTGACAATgcaaagaacatttttagtgCGTTGAGCAATGTTGAAACT
TCGAAACAACTTCGAactgaattcgaaatttttgtAAACTTATTTGGATG
TTGTGAATTGTCAAAAGTTGACTATGAGTGGTATAGACGGAATTATAGAA
AGATAAAGAAAGTGATGTTAGATTTGGGAAAGGGTTCgcatgaaaagaaa
aagaaagttttggatTTGTTGGGAAAGGATGCTTGGATGGAGTTAAGTGA
CAAGAAGAAGGTTAAGCACAGGCTATTCGATTGTCGGGAGTGTATGAAAA
ACCATGCGGATGGTATGCGTCTTTTTCCGATGAACAAGATGGATTTAAAG
GggcaaaaaagaagaaagaaatcgGGTTTGTGTAATGAAAAGGAGGAAGT
GGTTGAGAAAGTTGCTCAGGAGAAGATTAAAGAGTTGGATAGAGAATTTA
TGGAAAGATTTAATCGGAGTTTTAAGCAAGCGGCTGGAATTGAAGGAAAA
AGACAGATAGACGAGAAGGAAAGAAGAGCATATAACGCAGCAAAGAAAGA
TATAGAGAGAGCATGGAAGAAAACATCGGTTTTGAGaacaCTGGGGGGAA
CAACATCGAAAGCATCCGCATCCAGAGTGAGGTCAACCAAAGGATTCGAA
AGCTACCAAGAAGCATTGAGCAGATCGAATTTAGAAAAGGAGGAAATAAC
AGCTGGAAGAAAGAGAGCACGTACTCATGTTGGTAACAATTACACATGGA
GGGGTGAAGAATGTTTAGAGAAGgtTCAGGGATTGCCATTTGGTTCCGCG
ATCAACTTCAGCAGGCTGGCAAGGCAATACGATCTGAAGAATGCAAAAGG
CGAACGTCCTGGAAACGCTGGACAGGTTGTTAGGACATTTTTGGAAGCTA
ACAATGTTGACATGTCAAACTTTGTTATTTTTGGTAACAGTACACGTCGG
ATTAGAAAACGCAAGCTCAGGATTTTGGACTCCAACGTTACTGTTCCTGT
TGAAGAAAGCACGCTGGAACTGAACGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_494:80849..84725+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069134 ID=TCONS_00069134|Name=TCONS_00069134|organism=Clytia hemisphaerica|type=transcript|length=3877bp|location=Sequence derived from alignment at scaffold_494:80849..84725+ (Clytia hemisphaerica)
TTACACTATACCCTGATTccatataaaagcattcttcattctataattga
gattaaatttttatttagctTTTGTTGCTCTAaatcctttcaatcaacca
aaattcattcaaaactaaAGCCGAACAAACAGCATCAAGTCTTAGCAGAT
CTTAGATTTTTTTTAGTCGtgataaAATTTTTCTGTACATAACATTCAAC
ATATAGGCTATGTTACAAAGACTCTATGCGTGCCTAATACAATGAATTTC
TTATCTAGCCTAGTTTATCAactagttttatgaatttgatacattattcc
aatttagttcaagaaactaaatttacgttgtgttagaatgataaaaactt
gttttcattttcaggagtcTAAAGTGTGGTACATAATATAAGGGATTAAT
AAgaggaatgttctttgaataaaaacatccacagaTTTTGTTTAGCGTAC
CTTGTATGCAGTATCCTATGAGTATAACTTCTTGCATTTttggggggtgg
gtccccccttttttagaaaattggggttTTCAAGTTGGTNTATGCAGTAT
CCTCTGCATATAACTTCTTGCATTTttggggggtgggtcccccctttttt
agaaaattggggttttcaagttggtattgataccaatttaggggggtggt
ggtgtctactactttcaaatctcaaaaagtaaggtttttgggccctgggt
tggtatcctggaccctgaccccccccTGAAGAAAGAACAATTGTTGATAT
CTgattttttaacaataaaatcTTTACTCTTTCTGGGTAGGAACCATCGA
ATTTCTAAGTCATCATTGTTTTTAATCTAGATATTTTAGGTAAGTTTCCT
TAAGGTTATAAATCTGATTGGCATCTTTTGCACATAAGAATAATATTGTC
TTCAAAATGAGGGGTCTCAAAAGTGAGAAATAATAACAACATAAAGGATA
AGTGAGAGATTGTATTTTGTACATACAATGTTATGCTAAGTAATATTTTC
ATTGGTAATTTTATGCATCATgttctttttaatttgttaaaagaaaaaag
tttacttttgatagaatttagTAATGTGTTTAaactgattttttattttg
aaaatgatgtttGAAATAATCTCTCATAAAGGTATTAAATTAATgaatta
tattatttttccatgagtatattttgataaatttcctCCTGTTGATTATA
TTTCGCATGGATTAACTATTATCTGATTTTCTTGAGTTTTTTGCCATAGT
AAATTTACACAATCCAAACCAAAAGTTTAAGATTAACTTTGTCCCTAGTC
CCTAGGAAAAATGATTAGGTCATAAGGTCATAGGCTGANATAGTAAATTT
ACACAATCCAAACCAAAAGTTTAAGATTAACTTTGTCCCTAGTCCCTAGG
AAAAATGATTAGGTTATATAAGGTCATAGGCTGAGATATGGATTTTAGTC
CAAGAGAAAGTGATCTGATTCTTTGTTTGAcatgttatttattttttact
ttagtgAAAAGAAAACATCTAGTAAATCAAACACAAGTAAAGGATAAAAT
TCAGTCATTTTAGTAAGTCTTGAATCttgtctttcatttttaattgtGAG
ACTTGAAAATcatacattttattttattttttcctttggtcaaactcttt
ttttttaggGAGACAACTTAGCccccaaaaaaacaacaaaaaattataat
tttttattataaatatttttcgcagATAGGTGTATGAAACGTTTGTGTTA
GTGTATAAAAGTATAgaataaactttttttgcatttatttttcaggTGAA
TTTCTTATATTCTTTCAACATGTCTCGGTCCATTATTGACACCTCAGCAT
GTGGGTTCATGAAGGCTGTTGTTTATCAGTTAAATTGTGACAATgcaaag
aacatttttagtgCGTTGAGCAATGTTGAAACTTCGAAACAACTTCGAac
tgaattcgaaatttttgtAAACTTATTTGGATGTTGTGAATTGTCAAAAG
TTGACTATGAGTGGTATAGACGGAATTATAGAAAGATAAAGAAAGTGATG
TTAGATTTGGGAAAGGGTTCgcatgaaaagaaaaagaaagttttggatTT
GTTGGGAAAGGATGCTTGGATGGAGTTAAGTGACAAGAAGAAGGTTAAGC
ACAGGCTATTCGATTGTCGGGAGTGTATGAAAAACCATGCGGATGGTATG
CGTCTTTTTCCGATGAACAAGATGGATTTAAAGGggcaaaaaagaagaaa
gaaatcgGGTTTGTGTAATGAAAAGGAGGAAGTGGTTGAGAAAGTTGCTC
AGGAGAAGATTAAAGAGTTGGATAGAGAATTTATGGAAAGATTTAATCGG
AGTTTTAAGCAAGCGGCTGGAATTGAAGGAAAAAGACAGATAGACGAGAA
GGAAAGAAGAGCATATAACGCAGCAAAGAAAGATATAGAGAGAGCATGGA
AGAAAACATCGGTTTTGAGGTTTGATctgtgattttcaaaaaatgcttcT
TAATAACAATATATTCAGATACATTAGGATCCTAAAAGGGAGGGAAAGTT
TAAGCAAGTAATATTTATGTTTGGCGTTCACTTTTATCGGTCGAAAAATT
AGCCAAGCATGACAATCTAGACTCATTTCTTCTTTGAATTGAAGTCACAT
TTACTTTTAAACTCTTATAttctagattttaattttctttgaatcttttt
cttttcagaacaCTGGGGGGAACAACATCGAAAGCATCCGCATCCAGAGT
GAGGTCAACCAAAGGATTCGAAAGCTACCAAGAAGCATTGAGCAGATCGA
ATTTAGAAAAGGAGGAAATAACAGCTGGAAGAAAGAGAGCACGTACTCAT
GTTGGTAACAATTACACATGGAGGGGTGAAGAATGTTTAGAGAAGGTATT
CAATTAAATATCACATTTATCAAAACTGAGCAATCTTCTGCagttgattt
aaattttttacagCCCTATAATTGGATATTTACCTTGTTTTTATCAAACT
AGGGAGACCTCCTTCTATTCTATACGCTCACGtattcgataaaaatccat
ATCCCCTTAAAAAATAGAGAGCGTCATTAttaatataatattattttcaa
ggtTCAGGGATTGCCATTTGGTTCCGCGATCAACTTCAGCAGGCTGGCAA
GGCAATACGATCTGAAGAATGCAAAAGGTGACCGTACATTCACTAATATT
ATATCAAAgaacttcgagccgccatgacagttgtcctttgcgaaCAAAGC
TAGATCCTCGATTGTTTTCTTAAACAATTAGGAAAGACAAagcttcgctc
tccaccgttttatacgTTGTCTATCCAGTGTCTTTATTATAAACTCATGG
TCAAAGCAATTATTTGCCAAATTAATATCGTTCGTTTCTTCCAAACTCTA
CTCTGATCATTTTTCCCGTATACCGCCAATACGACTGTGAAATTTTGCGT
ATCTATATTTTCCCGCTTCTACTATCCTTGTAATgaacgataacatcgtc
tagagGTATACATGAAGTTTTCATtcgaattcaaaaatcaaaatttattt
cattctttttttatatttactttAGGCGAACGTCCTGGAAACGCTGGACA
GGTTGTTAGGACATTTTTGGAAGCTAACAATGTTGACATGTCAAACTTTG
TTATTTTTGGTAACAGTACACGTCGGATTAGAAAACGCAAGCTCAGGTAT
TTAATCTAAAGCTATGTCTAGGCCCTTATATCATGTTATTTATTCTGTGA
GAaataaaatagatttgtaaTCCCTATAATTATTTGAatttatatctttc
aactttttaactGTTCAGGATTTTGGACTCCAACGTTACTGTTCCTGTTG
AAGAAAGCACGCTGGAACTGAACGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043091XLOC_043091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069134-exon-scaffold_494-1491911889:80849..82410TCONS_00069134-exon-scaffold_494-1491911889:80849..82410Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1510915933:80849..82410TCONS_00069134-exon-scaffold_494-1510915933:80849..82410Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1575043694:80849..82410TCONS_00069134-exon-scaffold_494-1575043694:80849..82410Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1491911889:82644..83317TCONS_00069134-exon-scaffold_494-1491911889:82644..83317Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1510915933:82644..83317TCONS_00069134-exon-scaffold_494-1510915933:82644..83317Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1575043694:82644..83317TCONS_00069134-exon-scaffold_494-1575043694:82644..83317Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1491911889:83557..83743TCONS_00069134-exon-scaffold_494-1491911889:83557..83743Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1510915933:83557..83743TCONS_00069134-exon-scaffold_494-1510915933:83557..83743Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1575043694:83557..83743TCONS_00069134-exon-scaffold_494-1575043694:83557..83743Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1491911889:83950..84025TCONS_00069134-exon-scaffold_494-1491911889:83950..84025Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1510915933:83950..84025TCONS_00069134-exon-scaffold_494-1510915933:83950..84025Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1575043694:83950..84025TCONS_00069134-exon-scaffold_494-1575043694:83950..84025Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1491911889:84424..84544TCONS_00069134-exon-scaffold_494-1491911889:84424..84544Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1510915933:84424..84544TCONS_00069134-exon-scaffold_494-1510915933:84424..84544Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1575043694:84424..84544TCONS_00069134-exon-scaffold_494-1575043694:84424..84544Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1491911889:84667..84725TCONS_00069134-exon-scaffold_494-1491911889:84667..84725Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1510915933:84667..84725TCONS_00069134-exon-scaffold_494-1510915933:84667..84725Clytia hemisphaericaexon
TCONS_00069134-exon-scaffold_494-1575043694:84667..84725TCONS_00069134-exon-scaffold_494-1575043694:84667..84725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_494supercontigscaffold_494:80849..84725 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0745684	0	0.132472	0.182163	0.165345	3.07135e-10	0	0.223822	0	0	0	0.00146222	0	0	0.0470491	0	0.0374574	0.0307737	0	0.0792729	0	0	0	0	0	0.0789278	0.0838803	0.0896531	0.14824	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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