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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069143 ID=TCONS_00069143|Name=TCONS_00069143|organism=Clytia hemisphaerica|type=transcript|length=675bp
CCTGACCTCATCGAGATCAATAAAATTGGGCATGACTTGGATAAGGCTAT
CCACAAAGGTTTCAAAGATATATTTCGGACGTCTGATAGTTTGTGGTGCA
CAAAACATTTGCAAGATAACGACACCAAAGAGCTTCGAAAACGATGCAAA
TCCAGAGCGCATAATGGCAGATATATACGGCAGTCAGCAAGATATCATTT
TTAAAGAAGGACTTGCTGATGCAGTTGATTCTAACGACTTGAGTGCAAGA
ATCGAGAATTTGAGACCAACTTGGGAAAATCTTGCCCCAGGCTTCACAGA
TTGGTTTCGGAAGAATCGAGTTGAAAAATTTAACGAGTGTTTGGTGATTG
AGGCTAGAGACGCCCATGGGATAACGAAACGATATACGACCAACGCATTG
GAGAACCAACACCGCATTGAGAGAAAGGAATTGAAAGAGGACCAGATCCC
AAAACATATGGCTGATGTATCTGAAAAGCTTGGAGAATGTGTCCAGTCTT
ATTACACCGAGGCTCGAAGAGCTATCCGTGGAATCGGAAAATATCGTTTG
GCGCCAGATTATCAATATCTGGCTGTTGAGCCGGGTACCTGGTGCTCATG
GAATGACGAAAAAAGAGATGTATACTTCGAAAAGTTCATGCGCGCTAGAC
CACTAGCATACGCTTTCGAAATACC Run BLAST on NCBI protein sequence of TCONS_00069143-protein >TCONS_00069143-protein ID=TCONS_00069143-protein|Name=TCONS_00069143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
LTSSRSIKLGMTWIRLSTKVSKIYFGRLIVCGAQNICKITTPKSFENDAN
PERIMADIYGSQQDIIFKEGLADAVDSNDLSARIENLRPTWENLAPGFTD
WFRKNRVEKFNECLVIEARDAHGITKRYTTNALENQHRIERKELKEDQIP
KHMADVSEKLGECVQSYYTEARRAIRGIGKYRLAPDYQYLAVEPGTWCSW
NDEKRDVYFEKFMRARPLAYAFEI Run BLAST on NCBI transcript from alignment at scaffold_494:112461..115200- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069143 ID=TCONS_00069143|Name=TCONS_00069143|organism=Clytia hemisphaerica|type=transcript|length=2740bp|location=Sequence derived from alignment at scaffold_494:112461..115200- (Clytia hemisphaerica)
CCTGACCTCATCGAGATCAATAAAATTGGGCATGACTTGGATAAGGCTAT
CCACAAAGGTTTGTTTTGTTATTTTTATTTGTGCGATTGGTTGACACCTG
CAAAAGCCCAGCTGACACACAACGTTGTTATTTGAACGTTTATAACGTTA
GATAAACGTTGAAACAACGTTGTGTGCCAGCTGGGACCTAGGTTTACTCA
ACTTCACGCTCAACTTGTCTTTACTATGCAAATTAATATCTTATTTCGCT
ATTTTGAAAAAATATATTGACCTTTTGTCCGGGACTGGCATGACATTATT
GATAAACGAACTCTTTATGAACAAGTGTAAACGAATCTTAAGTCTACCGT
ATTACTTCGAATAAAGGCCCCCTCAAATAAACACCCCACCATGAACTAAA
ATTTTAACAAACGCCTTCTTCAAACTAACGCCTCCACTCTAGGAGGGATG
TTTATTTGAAACAAGTAGCTATAAAGAAGTGTCATTTGAAGGAAAACTTA
TATGTTAGTAGTCGCAGACGTGTATTCTTTAAGTATTTAAAGGTAATTTG
AACCGTTTTCTAAAACACTAAAATGACATACCACTATTCAAAGAATAACG
AAAAAGCGAAAGTAAGATTCGCATTCACTTTGTCAAAGTGACTTTGGTTT
AAAATTATTTTATAAGCCAAACAATTCAACAGCTCTTCTTTGGTATTCTA
TTTAAATGAGCAGAGAACTTAAGCGGATTAATTTTCGCAAGCAGATATTT
TCGTGAGACAATTCTTTTCAAAAATAAACTAATTTTCGTGGGACCTTTTT
TCGCAATCACGGTAAATGAAAATTTATCCACTCAATGTATAATATTTAAG
AAACTTCGGTGCTAGAAGGTCATAAGGGAGCAATCAAAAAGTATCTACTA
GAGAGGGGTGGAAGATATTTTGCCACCCTTAGGGGGAGGGGGTTCAAAAT
GTTTTGCCATCTTAAGAAGATTTTAAATGAAGTCTTTTTAACCATTTATG
AGAGCTTTTTTTTTAATATTTTTATTGATTAACTTTAAAGATTTACTTAT
TAGTAAGGTCTCAAATTTTAAGAAAGTTAGCTTGAAATTTTGGTCTTTAT
CTCAAGAAATCACAGGGTCCGCATAAACAGAAAGGGCTGATGAGGAGCAT
TGTCCCTGCACTATAGTAATTTTTAAATCTGACCTTTTTTATAGGCTTTT
GAGAACTTAGATTTTCAGGAAAGTCAGTTCAAAACAGATTAAAAATTAAT
TTTAACAGGTTAAAATCTTTCTAAGGGGGGGGGGGGGGGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGCGAAATTTTGTTGGCTTGGTTAGGAGGGGCTCGAAATATT
TTTCGACATATCGAGGGAGGGGTGCGACCGACCCCCTCTAGATGATTTTT
TATGACCGCTTCCTAACACTTGTAAATTTAGAGGTCTTGGGGTCTCGATC
CCCCCTTCCCTCCCCTCACGCTTTTCCTACTAAAAATAGTAAAAGTCGGA
AGGTTTTTACATACCTGATACGAAATATAACGTTAGGAAGAATACTTAAC
CTTTTGAGCGTCCAACATTGCTTGAAAAAGTTTCCACCTAAAGTCTCCAC
CTTTTTTACATATCAACCACTGTATCAATTCAAAGCTATGTTCCTAAAAA
CAGAACCAAGACTTTTCTTTTATAATTTCAAGATTCATGGTTTTAAGTGT
CCAGTAAAATGAGCTTTCAGAAGGAAAATCAACGAAGGATTAAAAATTGT
TTTGCATTTTTCATTAACTTCAGGTTTCAAAGATATATTTCGGACGTCTG
ATAGTTTGTGGTGCACAAAACATTTGCAAGATAACGACACCAAAGAGCTT
CGAAAACGATGCAAATCCAGAGCGCATAATGGCAGATATATACGGCAGTC
AGCAAGATATCATTTTTAAAGAAGGACTTGCTGATGCAGTTGATTCTAAC
GACTTGAGTGCAAGAATCGAGAATTTGAGACCAACTTGGGAAAATCTTGC
CCCAGGCTTCACAGATTGGTTTCGGAAGAATCGAGTTGAAAAATTTAACG
AGTGTTTGGTGATTGAGGCTAGAGACGCCCATGGGATAACGAAACGATAT
ACGACCAACGCATTGGAGAACCAACACCGCATTGAGAGAAAGGAATTGAA
AGAGGACCAGATCCCAAAACATATGGCTGATGTATCTGAAAAGCTTGGAG
AATGTGTCCAGTCTTATTACACCGAGGCTCGAAGAGCTATCCGTGGAATC
GGAAAATATCGTTTGGCGCCAGATTATCAATATCTGGCTGTTGAGCCGGG
TACCTGGTGCTCATGGAATGACGAAAAAAGAGATGTATACTTCGAAAAGT
TCATGCGCGCTAGACCACTAGCATACGCTTTCGAAATACC Coding sequence (CDS) from alignment at scaffold_494:112461..115200- >TCONS_00069143 ID=TCONS_00069143|Name=TCONS_00069143|organism=Clytia hemisphaerica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_494:112461..115200- (Clytia hemisphaerica)
GTTTCAAAGATATATTTCGGACGTCTGATAGTTTGTGGTGCACAAAACAT
TTGCAAGATAACGACACCAAAGAGCTTCGAAAACGATGCAAATCCAGAGC
GCATAATGGCAGATATATACGGCAGTCAGCAAGATATCATTTTTAAAGAA
GGACTTGCTGATGCAGTTGATTCTAACGACTTGAGTGCAAGAATCGAGAA
TTTGAGACCAACTTGGGAAAATCTTGCCCCAGGCTTCACAGATTGGTTTC
GGAAGAATCGAGTTGAAAAATTTAACGAGTGTTTGGTGATTGAGGCTAGA
GACGCCCATGGGATAACGAAACGATATACGACCAACGCATTGGAGAACCA
ACACCGCATTGAGAGAAAGGAATTGAAAGAGGACCAGATCCCAAAACATA
TGGCTGATGTATCTGAAAAGCTTGGAGAATGTGTCCAGTCTTATTACACC
GAGGCTCGAAGAGCTATCCGTGGAATCGGAAAATATCGTTTGGCGCCAGA
TTATCAATATCTGGCTGTTGAGCCGGGTACCTGGTGCTCATGGAATGACG
AAAAAAGAGATGTATACTTCGAAAAGTTCATGCGCGCTAGACCACTAGCA
TACGCTTTCGAAATACTGACCTCATCGAGATCAATAAAATTGGGCATGAC
TTGGATAAGGCTATCCACAAAGGTTTCAAAGATATATTTCGGACGTCTGA
TAGTTTGTGGTGCACAAAACATTTGCAAGATAACGACACCAAAGAGCTTC
GAAAACGATGCAAATCCAGAGCGCATAATGGCAGATATATACGGCAGTCA
GCAAGATATCATTTTTAAAGAAGGACTTGCTGATGCAGTTGATTCTAACG
ACTTGAGTGCAAGAATCGAGAATTTGAGACCAACTTGGGAAAATCTTGCC
CCAGGCTTCACAGATTGGTTTCGGAAGAATCGAGTTGAAAAATTTAACGA
GTGTTTGGTGATTGAGGCTAGAGACGCCCATGGGATAACGAAACGATATA
CGACCAACGCATTGGAGAACCAACACCGCATTGAGAGAAAGGAATTGAAA
GAGGACCAGATCCCAAAACATATGGCTGATGTATCTGAAAAGCTTGGAGA
ATGTGTCCAGTCTTATTACACCGAGGCTCGAAGAGCTATCCGTGGAATCG
GAAAATATCGTTTGGCGCCAGATTATCAATATCTGGCTGTTGAGCCGGGT
ACCTGGTGCTCATGGAATGACGAAAAAAGAGATGTATACTTCGAAAAGTT
CATGCGCGCTAGACCACTAGCATACGCTTTCGAAATACTGACCTCATCGA
GATCAATAAAATTGGGCATGACTTGGATAAGGCTATCCACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069143-exon-scaffold_494-1575043694:115143..115200 | TCONS_00069143-exon-scaffold_494-1575043694:115143..115200 | Clytia hemisphaerica | exon |
| TCONS_00069143-exon-scaffold_494-1575043694:112461..113077 | TCONS_00069143-exon-scaffold_494-1575043694:112461..113077 | Clytia hemisphaerica | exon |
| TCONS_00069143-exon-scaffold_494-1510915933:115143..115200 | TCONS_00069143-exon-scaffold_494-1510915933:115143..115200 | Clytia hemisphaerica | exon |
| TCONS_00069143-exon-scaffold_494-1510915933:112461..113077 | TCONS_00069143-exon-scaffold_494-1510915933:112461..113077 | Clytia hemisphaerica | exon |
| TCONS_00069143-exon-scaffold_494-1491911889:115143..115200 | TCONS_00069143-exon-scaffold_494-1491911889:115143..115200 | Clytia hemisphaerica | exon |
| TCONS_00069143-exon-scaffold_494-1491911889:112461..113077 | TCONS_00069143-exon-scaffold_494-1491911889:112461..113077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:112461..115200 - |
Blast
The following BLAST results are available for this feature:
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