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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069149 ID=TCONS_00069149|Name=TCONS_00069149|organism=Clytia hemisphaerica|type=transcript|length=1166bp
AAACACTGTAAATACAAAAACCGAAAATACAAACACTGTAAATACAAACA
CTGTTAATAATGAATCTACAAAAATAGTCACAAACCCAGACCACTCGGAC
GTGCTTATAAAACACGAAGACTTAAGTGACCAAGAAGTGATTGACGAAGA
TAGTTGGAGCCCTACCAAAATATTAGATGTTCTTATCAACCAACCCGAGA
AATTTCAACGCCATGATAAGCCGAAATCAATTCAAAAGAATGCGGTCTTT
GTCCTCGACAGATGAGAAATCGAAATTGATTCTGCAAAAGCAGACGATAA
CGGTGCTTATGTGAGTACGGGGAATCCTAAAAAACACTATTATTGGGAAA
ATAACATAATTACTGGCTCAAAGAAAGCTAAGTTTGTTGAATATGACAAA
ACTGACAATTGCTATTATCTTAAAGTTAATTCACCAGAGGATTTATCCAG
CACGAAGAGGAGGGTGCCTAGAGTTGATGTCTACGAACTAAAACGTAGTT
AtcgtaaaaacaaaaacaatcccATATTGACACACATTATAACTCAAGTT
AGAAACGTTTTTGATCAGAAGTATCATACATTTTACTTGGTAACGTACAA
GAATACAGCTACCACTATAAATGACAATGATGTTTTTGTTATGCCAAAGC
ATGGAAATGCCAAACATTCAGAAGCACCGTTATACTACCGTCATTACCCA
TCCATCAATAAGGAGATCGATGTTGGAATAGAAAAGGGACATTCGACAGC
AAAAATTTACCGAAAATTGGCAAAGACAGAGACCAACAGCCTATCTGAAA
CCATTAAAAACCCGAAAGTCATCGACAACCGACGCGCTGTTACAACTGCT
AATGCTAAACAAATCCAAGCTGAAGGTCCTACTCCCAAAACCTTAGGTGA
AGCTATTGTCATCTACATAAAGAAGCCAGGAAGCTATTCGAAACAGTTTT
TCCTCACAAATAAGGAGTACGGCGCACTGAACTATTCTGATTATCAACTA
CTTGACCTTAAACGTCATTGCGTTGACGAAAAAGCTGTGTTTTCAGTGGA
CACCACCTTCGACATTTGCGAAAACCTGTTTCTCACAGATTCAACATATG
AAAATCTGGCGTTGATTGATGCGAAATCAAAAAATCATCCACAATTCCCT
GGTCCGTCCTTCTggc Run BLAST on NCBI protein sequence of TCONS_00069149-protein >TCONS_00069149-protein ID=TCONS_00069149-protein|Name=TCONS_00069149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MPKHGNAKHSEAPLYYRHYPSINKEIDVGIEKGHSTAKIYRKLAKTETNS
LSETIKNPKVIDNRRAVTTANAKQIQAEGPTPKTLGEAIVIYIKKPGSYS
KQFFLTNKEYGALNYSDYQLLDLKRHCVDEKAVFSVDTTFDICENLFLTD
STYENLALIDAKSKNHPQFPGPSFW Run BLAST on NCBI transcript from alignment at scaffold_494:115256..116421 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069149 ID=TCONS_00069149|Name=TCONS_00069149|organism=Clytia hemisphaerica|type=transcript|length=1166bp|location=Sequence derived from alignment at scaffold_494:115256..116421 (Clytia hemisphaerica)
gccAGAAGGACGGACCAGGGAATTGTGGATGATTTTTTGATTTCGCATCA
ATCAACGCCAGATTTTCATATGTTGAATCTGTGAGAAACAGGTTTTCGCA
AATGTCGAAGGTGGTGTCCACTGAAAACACAGCTTTTTCGTCAACGCAAT
GACGTTTAAGGTCAAGTAGTTGATAATCAGAATAGTTCAGTGCGCCGTAC
TCCTTATTTGTGAGGAAAAACTGTTTCGAATAGCTTCCTGGCTTCTTTAT
GTAGATGACAATAGCTTCACCTAAGGTTTTGGGAGTAGGACCTTCAGCTT
GGATTTGTTTAGCATTAGCAGTTGTAACAGCGCGTCGGTTGTCGATGACT
TTCGGGTTTTTAATGGTTTCAGATAGGCTGTTGGTCTCTGTCTTTGCCAA
TTTTCGGTAAATTTTTGCTGTCGAATGTCCCTTTTCTATTCCAACATCGA
TCTCCTTATTGATGGATGGGTAATGACGGTAGTATAACGGTGCTTCTGAA
TGTTTGGCATTTCCATGCTTTGGCATAACAAAAACATCATTGTCATTTAT
AGTGGTAGCTGTATTCTTGTACGTTACCAAGTAAAATGTATGATACTTCT
GATCAAAAACGTTTCTAACTTGAGTTATAATGTGTGTCAATATgggattg
tttttgtttttacgaTAACTACGTTTTAGTTCGTAGACATCAACTCTAGG
CACCCTCCTCTTCGTGCTGGATAAATCCTCTGGTGAATTAACTTTAAGAT
AATAGCAATTGTCAGTTTTGTCATATTCAACAAACTTAGCTTTCTTTGAG
CCAGTAATTATGTTATTTTCCCAATAATAGTGTTTTTTAGGATTCCCCGT
ACTCACATAAGCACCGTTATCGTCTGCTTTTGCAGAATCAATTTCGATTT
CTCATCTGTCGAGGACAAAGACCGCATTCTTTTGAATTGATTTCGGCTTA
TCATGGCGTTGAAATTTCTCGGGTTGGTTGATAAGAACATCTAATATTTT
GGTAGGGCTCCAACTATCTTCGTCAATCACTTCTTGGTCACTTAAGTCTT
CGTGTTTTATAAGCACGTCCGAGTGGTCTGGGTTTGTGACTATTTTTGTA
GATTCATTATTAACAGTGTTTGTATTTACAGTGTTTGTATTTTCGGTTTT
TGTATTTACAGTGTTT Coding sequence (CDS) from alignment at scaffold_494:115256..116421 >TCONS_00069149 ID=TCONS_00069149|Name=TCONS_00069149|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_494:115256..116421 (Clytia hemisphaerica)
ccAGAAGGACGGACCAGGGAATTGTGGATGATTTTTTGATTTCGCATCAA
TCAACGCCAGATTTTCATATGTTGAATCTGTGAGAAACAGGTTTTCGCAA
ATGTCGAAGGTGGTGTCCACTGAAAACACAGCTTTTTCGTCAACGCAATG
ACGTTTAAGGTCAAGTAGTTGATAATCAGAATAGTTCAGTGCGCCGTACT
CCTTATTTGTGAGGAAAAACTGTTTCGAATAGCTTCCTGGCTTCTTTATG
TAGATGACAATAGCTTCACCTAAGGTTTTGGGAGTAGGACCTTCAGCTTG
GATTTGTTTAGCATTAGCAGTTGTAACAGCGCGTCGGTTGTCGATGACTT
TCGGGTTTTTAATGGTTTCAGATAGGCTGTTGGTCTCTGTCTTTGCCAAT
TTTCGGTAAATTTTTGCTGTCGAATGTCCCTTTTCTATTCCAACATCGAT
CTCCTTATTGATGGATGGGTAATGACGGTAGTATAACGGTGCTTCTGAAT
GTTTGGCATTTCCATGCTTTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069149-exon-scaffold_494-1491911889:115256..116421 | TCONS_00069149-exon-scaffold_494-1491911889:115256..116421 | Clytia hemisphaerica | exon |
| TCONS_00069149-exon-scaffold_494-1510915933:115256..116421 | TCONS_00069149-exon-scaffold_494-1510915933:115256..116421 | Clytia hemisphaerica | exon |
| TCONS_00069149-exon-scaffold_494-1575043694:115256..116421 | TCONS_00069149-exon-scaffold_494-1575043694:115256..116421 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:115256..116421 . |
Blast
The following BLAST results are available for this feature:
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