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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069170 ID=TCONS_00069170|Name=TCONS_00069170|organism=Clytia hemisphaerica|type=transcript|length=1372bp
GACATAATTCGCGATCTTGTAATTTTAAGTTTGTTGTCTAGGATTTTTAT
CTACAATCATAGGGAAAATTTAGTCGATCTTTTGTCAAAATTACAATTAC
TTACAAAAGTGCTCAGCTCAAAAATAACAAAAGTGCGCAAAAATTACAAA
ACTGCGCAGAAAAATTACCAAACTGCGCAAAACTTACATAAGAAGTGTGC
GCTAAACAGTCCCTTATATTTCCTTAAAAACTAACTTTGTGTTTCTCCTC
ATATTACATATGGCTTCACATAACAGAGCACCTTTTTTCTAGTGAAAATG
ATGGAAATTTCAGTTTAAGTCTCTCTTTCATCGAAAATAATGACAAAATC
GGAGCTTTCTTGAAATTCTCGACAAGGCTCTTTACAAAAGCTTCGTCCAT
TTATATCTTATCCAAACGATCAGCAATGCTGTCTAAAAAGCTTTGACCGA
AACCATACAGCAAGTTCATTTCTTGTACGAAATAGCAAGGTAGGTAGCCA
TTCTTTAAAGCTTGTGACAATTTTTCCAACATCATAAATGCAAGCTTCAA
ATAATCATTCGTTTGATCAAGCGTTTGAAACTCCTCTGGTGGTGTCTCTT
CTAACGTGAAAAGAAACACAGTTTTCAAGTGATAAGAAGATAATTTACGA
TCAGTTTCGCTCTCAACAAGCCCATGAGTTTCCAATGTGAAGATCAACTT
TGCCAAAAGGTAACTTTGCTTTTGGAAAGAATTTTGTTGATTTGCCAAAA
TAGATTCAGCTTCAGAGAAAGATAACCGCCACGTCTTCGATTCTTCTCCA
ATAGATTTCCGTACTAAGGTGCATCCAAGCTTACGAATTTCACACAAGGT
CTGTTGATCTGGCCAGTATCgctttctttcaaaccattttgAAGCGATAT
CGGGCCAGAATTTCAAACGTAGACAGAATACCAAATCGACTGTCAATAAA
CTGAGGATTTTATAATATGAACGTTCAGCGTTCTTTCCCCCATTATCTCT
AAGAAATTGATCCCTTATACCAACGGTAGCTGATGGACATCCATGGTTAG
ATTCCAGAAACGGCAGATTTTTGTCATCCTTGTGCTCCTTATTAAGCTTG
CTCAGTGCTTCTTTCACAGTATCATCTCCAGCAAGGAAATGAAAAAACTT
CGATGGGttataaagaatttttttaagttGGGGATTCCCAACATCGATAC
GATAAAAGCCTGGATATTCAGTCTCAATAAGGATACCAGATGCGTCTTCG
TTTGACAGCACACCTTCGACCCTCATGAAATCTAAGTCAGgagttttgtt
tttaactggTATCATTAGAGGAGTCAAAAAAGCTCCTTCCATTGAACTTC
CACTAgcaaaccaatctctttt Run BLAST on NCBI transcript from alignment at scaffold_495:133966..136598- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069170 ID=TCONS_00069170|Name=TCONS_00069170|organism=Clytia hemisphaerica|type=transcript|length=2633bp|location=Sequence derived from alignment at scaffold_495:133966..136598- (Clytia hemisphaerica)
GACATAATTCGCGATCTTGTAATTTTAAGTTTGTTGTCTAGGATTTTTAT
CTACAATCATAGGGAAAATTTAGTCGATCTTTTGTCAAAATTACAATTAC
TTACAAAAGTGCTCAGCTCAAAAATAACAAAAGTGCGCAAAAATTACAAA
ACTGCGCAGAAAAATTACCAAACTGCGCAAAACTTACATAAGAAGTGTGC
GCTAAACAGTCCCTTATATTTCCTTAAAAACTAACTTTGTGTTTCTCCTC
ATATTACATATGGCTTCACATAACAGAGCACCTTTTTTCTAGTGAAAATG
ATGGAAATTTCAGTTTAAGTCTCTCTTTCATCGAAAATAATGACAAAATC
GGAGCTTTCTTGAAATTCTCGACAAGGCTCTTTACAAAAGCTTCGTCCAT
TTATATCTTATCCAAACGATCAGCAATGCTGTCTAAAAAGCTTTGACCGA
AACCATACAGCAAGTTCATTTCTTGTACGAAATAGCAAGGTAGGTAGCCA
TTCTTTAAAGCTTGTGACAATTTTTCCAACATCATAAATGCAAGCTTCAA
ATAATCATTCGTTTGATCAAGCGTTTGAAACTCCTCTGGTGGTGTCTCTT
CTAACGTGAAAAGAAACACAGTTTTCAAGTGATAAGAAGATAATTTACGA
TCAGTTTCGCTCTCAACAAGCCCATGAGTTTCCAATGTGAAGATCAACTT
TGCCAAAAGGTAACTTTGCTTTTGGAAAGAATTTTGTTGATTTGCCAAAA
TAGATTCAGCTTCAGAGAAAGATAACCGCCACGTCTTCGATTCTTCTCCA
ATAGATTTCCGTACTAAGGTGCATCCAAGCTTACGAATTTCACACAAGGT
CTGTTGATCTGGCCACTATNGTAGTACCTAAGGCGTAACAGGGTGATTGC
CCCCTGAATTACAGCTCGGACAAGTACACACTAGGACAATAACCCTAGAG
ATGGTTGGTCCCCGAAAAATTTTGTTTCATTCTGTTGAATGTTGCAAATT
TCAAATTGTATATCTCATAGTCAAAGTATATATTTTTGAAATCGCTAAGC
TTTAAGCTTTCCAAATATGTAAAAATAACGATCTATTTATAAAAAATTTC
ATGAAAAAAACTAACAGTAAATTAATAAGCTCCTTCCTACCTTCCCAACG
ATACCAAACCTTTTAAGATTGAAGCATGGTTGAGAAATAACAAGCAAAGC
AAAATTTAGTTCATACTTATCGTGATAATAAATGTTTACGTTAGGGAGCT
GATAAATCACTTTAATAATGAATTTATAGCTCGACATAATTCGCGATCTT
GCAATTTTAAGTTTGTTGTCTAGGATTTTTATGCACAATGAAAGGGAAAA
TTTAGTCGATCTTTTGTCAAAATTACAATTACTTACAAAAGTGCGCAGCT
CAAAAATAACAAAAGTGCGCAAAAATTACAAAACTGCGCAAAACTTACAT
AAGAAGTGTGCGCTAAACAGTCCCTTATATTTCCTTAAAAACTAACTTTG
TGTTTCTCCTCATATTACATATGGCTTCACATAACAGAGCACCTTTTTTC
TAGTGAAAATGATGGAAATTTCAGTTTAAGTCTCTCTTTCATCGAAAATA
ATGACAAAATCGGAGCTTTCTTGAAATTCTCGACAAGGCTCTTTACAAAA
GCTTCGTCCATTTATATCTTATCCAAACGATCAGCAATGCTGTCTAAAAA
GCTTTGACCGAAACCATACAGCAAGTTCATTTCTTGTACGAAATAGCAAG
GTAGGTAGCCATTCTTTAAAGCTTGTGACAATTTTTCCAACATCATAAAT
GCAAGCTTCAAATAATCATTCGTTTGATCAAGCGTTTGAAACTCCTCTGG
TGGTGTCTCTTCTAACGTGAAAAGAAACACAGTTTTCAATTGATAAGAAC
ATAATTTACGATCAGTTTCGCTCTCAACAAGCCCATGAGTTTCCAATGTG
AAGATCAACTTTGCCAAAAGGTAACTTTTCTTTTGGAAAGAATTTTGTTG
ATTTGCCAAAATAAATTCAGCTTCAGAGAAAGATAACCGCCACGTCTTCG
ATTCTTCTCCAATACATTTCCGTACTAAGGTGCATCCAAGCTTACGAATT
TCACACAAGGTCTGTTGATCTGGCCAGTATCGCTTTCTTTCAAACCATTT
TGAAGCGATATCGGGCCAGAATTTCAAACGTAGACAGAATACCAAATCGA
CTGTCAATAAACTGAGGATTTTATAATATGAACGTTCAGCGTTCTTTCCC
CCATTATCTCTAAGAAATTGATCCCTTATACCAACGGTAGCTGATGGACA
TCCATGGTTAGATTCCAGAAACGGCAGATTTTTGTCATCCTTGTGCTCCT
TATTAAGCTTGCTCAGTGCTTCTTTCACAGTATCATCTCCAGCAAGGAAA
TGAAAAAACTTCGATGGGTTATAAAGAATTTTTTTAAGTTGGGGATTCCC
AACATCGATACGATAAAAGCCTGGATATTCAGTCTCAATAAGGATACCAG
ATGCGTCTTCGTTTGACAGCACACCTTCGACCCTCATGAAATCTAAGTCA
GGAGTTTTGTTTTTAACTGGTATCATTAGAGGAGTCAAAAAAGCTCCTTC
CATTGAACTTCCACTAGCAAACCAATCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069170-exon-scaffold_495-1575043694:135751..136598 | TCONS_00069170-exon-scaffold_495-1575043694:135751..136598 | Clytia hemisphaerica | exon |
| TCONS_00069170-exon-scaffold_495-1575043694:133966..134489 | TCONS_00069170-exon-scaffold_495-1575043694:133966..134489 | Clytia hemisphaerica | exon |
| TCONS_00069170-exon-scaffold_495-1510915933:135751..136598 | TCONS_00069170-exon-scaffold_495-1510915933:135751..136598 | Clytia hemisphaerica | exon |
| TCONS_00069170-exon-scaffold_495-1510915933:133966..134489 | TCONS_00069170-exon-scaffold_495-1510915933:133966..134489 | Clytia hemisphaerica | exon |
| TCONS_00069170-exon-scaffold_495-1491911889:135751..136598 | TCONS_00069170-exon-scaffold_495-1491911889:135751..136598 | Clytia hemisphaerica | exon |
| TCONS_00069170-exon-scaffold_495-1491911889:133966..134489 | TCONS_00069170-exon-scaffold_495-1491911889:133966..134489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_495 | supercontig | scaffold_495:133966..136598 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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