TCONS_00069237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069237
Unique NameTCONS_00069237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069237 ID=TCONS_00069237|Name=TCONS_00069237|organism=Clytia hemisphaerica|type=transcript|length=1561bp
ACTATACATTTTTACTCTTGAGCTCTCTTTTCATTTTAGGAACACTAAAA
CAATACAGAAGAATAATACCAAAATGACTGCagttgaaaaattattaaaa
ttatatAGCGCTTGGTCTTGCCCGTATGCTCAACGAGCTTGGATTGGTTT
ATTATTCAAGGAGATTCCTTTTGATTATATAGAACAAGACCCTTACAACA
AGACACCTGAATGGTTGGCAATAAACCCACGTGGTCTTGTCCCTGCAATG
GTATTGGCTGATGGAAAAGTAGTGTATGAAAGCTCAATTTGTCTTGAATA
CCTGGACGAAGCTTATCCTGAAACAGCGaatcaaattttaccaaaagaTG
CTTATCAGAGGGCGTATTGTCGTATTTGGGGCGACTTCGTTTCGGGCAAT
ATAGGAGCGCCCTTGTATGCTATTTTATCCAAGAAAGGAGAAGAAAGAGA
AGAGTCAAAAAAGAAATTGGTTGCTAAGCTTGAACAGTTTATGAAGGAAT
TCAAAGGTCCTTTCTTCAATGGTGATCATTTTGGATATGTTGATATAATG
GTGGTACCTTTCTTATTACGATTGGATGTTCTTAAGCATTTCCGTAATTT
TCATCCAGCCGATGAAATACCAGATgcaacgttaaaacaacgttttcTGG
ACTGGGATAAAGCATTAAGAAACCACCATGCTGTTGCTCCGACCATCGCT
ACTGTCCAACAATTTGTAGAGAAGTACAATGGGAAATATGATGATTAAAC
CGCTTATGAATTGTTATTAATTTATCGACTAAATAGAGAAGAATATTGTC
CATAACTCACTGACCTCCTAGGACGAATTCCTTAACAAAATCTCAATCGA
AATTAATAAAGGAGTCAAGTGTGGTGTAGAAGGTTCCCACATACCTTAAA
GTTCAGCCTTTTATCGTTccatataagaaaaaaaatattccaaaatcaCC
GTTTACGAAAGAAAAGTTATCGATAActgaaaaatagtgaaaaattgcAA
TTCCGAAAAAAGAGCAAAACGGAATTGAGCAAGCTAAGTGTTTTGGTGTA
ATTTATTAAGATAGAACTTGCATTTCCTAGTAGACCATTAGAATGCTATT
AAAATGATATTAATTATTGTGCCTTGTGTTCTTAGGGTAAACTCTTAAAG
AAACATGCGTACCCGCAAGTTGTTGTAGTTTTTAGATTCTATTTCTTTGC
CTTCTACAACCtgctaaaaatatatataaaccgaaaataataaataGTAA
GGGTGTACTTTAGATAAGACTAATACTCTCATCAGTAAGCCATAACACTT
AACATACTTTAAGGTGTTCTTCTTAAGAAAAGTAATATGGGAAAGTAAGT
TTGCTCCACGAATAAAAACTTTTCCTAAAAATCTACCCTTActcacttga
aaaaaaaacctcGGAAAATTAAGAAGACAAATTGATatgaaaaaatactt
caacTGAAGTTCAATACTTGATACTTACAGGTACCAACTTTGATAATGac
atttttataataaaagcTTAATTAAAATTGGCAATCTCTATTTAAGGAAG
CAAAACAATAA
Run BLAST on NCBI

protein sequence of TCONS_00069237-protein

>TCONS_00069237-protein ID=TCONS_00069237-protein|Name=TCONS_00069237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
LYIFTLELSFHFRNTKTIQKNNTKMTAVEKLLKLYSAWSCPYAQRAWIGL
LFKEIPFDYIEQDPYNKTPEWLAINPRGLVPAMVLADGKVVYESSICLEY
LDEAYPETANQILPKDAYQRAYCRIWGDFVSGNIGAPLYAILSKKGEERE
ESKKKLVAKLEQFMKEFKGPFFNGDHFGYVDIMVVPFLLRLDVLKHFRNF
HPADEIPDATLKQRFLDWDKALRNHHAVAPTIATVQQFVEKYNGKYDD
Run BLAST on NCBI

transcript from alignment at scaffold_496:343843..345924-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069237 ID=TCONS_00069237|Name=TCONS_00069237|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at scaffold_496:343843..345924- (Clytia hemisphaerica)
ACTATACATTTTTACTCTTGAGCTCTCTTTTCATTTTAGGAACACTAAAA
CAATACAGAAGAATAATACCAAAATGACTGCAGTTGAAAAATTATTAAAA
TTATATAGCGCTTGGTCTTGCCCGTATGCTCAACGAGCTTGGATTGGTTT
ATTATTCAAGGAGATTCCTTTTGATTATATAGAACAAGACCCTTACAACA
AGACACCTGAATGGTTGGCAATAAACCCACGTGGTCTTGTCCCTGCAATG
GTATTGGCTGATGGAAAAGTAGTGTATGAAAGCTCAATTTGTCTTGAATA
CCTGGACGAAGCTTATCCTGAAACAGCGAATCAAATTTTACCAAAAGATG
CTTATCAGAGGGCGTATTGTCGTATTTGGGGCGACTTCGTTTCGGGCAAT
ATAGGAGCGCCCTTGTATGCTATTTTATCCAAGAAAGGAGAAGAAAGAGA
AGAGTCAAAAAAGAAATTGGTTGCTAAGCTTGAACAGTTTATGAAGGTAA
GTAAGTATAATTAAAAATTTTTTAAATGACATGACAGCCTTTTTTGTTTA
TTTGAATCGGTCGAATGCATCGAATATTCGTTGTCACTAAAACGGGTTCT
TTTTGCCCCCCCCTCGTAGTGGCGCCCGATTTTAAGAAGACCGTACGCGT
GGACGAAAAAAATGAAGGTCTCAAATTAGACCCTTACAGTGAAGAGAAAA
CTTAGCCAAAATTTGAGCAAAAATATGACAATTATTGTGCCCTTCTTTTA
TTATATTTTTCTGGATTTTGCAAAAGTTTGGCTTTGGATTTCTCATTCTA
TACATCCTTAGAGTGCACTTTGGAAAGCCCGAGAACTAATCCTTAAGTGC
TCTACCTACGGTAGGTCGTCTAACGTTGAGTATTGCCCCACTTCAGGCTA
AAGGGTAGAACCAGGCTTTTTAGATCAAACAGAGGATTTTTATTTTGATA
GCTGTAAATATGCTTAACACTTAACAAACACGGGACCGTTGAGAGGATGC
TTCATCTTTTATTTCAGGAATTCAAAGGTCCTTTCTTCAATGGTGATCAT
TTTGGATATGTTGATATAATGGTGGTACCTTTCTTATTACGATTGGATGT
TCTTAAGCATTTCCGTAATTTTCATCCAGCCGATGAAATACCAGATGCAA
CGTTAAAACAACGTTTTCTGGACTGGGATAAAGCATTAAGAAACCACCAT
GCTGTTGCTCCGACCATCGCTACTGTCCAACAATTTGTAGAGAAGTACAA
TGGGAAATATGATGATTAAACCGCTTATGAATTGTTATTAATTTATCGAC
TAAATAGAGAAGAATATTGTCCATAACTCACTGACCTCCTAGGACGAATT
CCTTAACAAAATCTCAATCGAAATTAATAAAGGAGTCAAGTGTGGTGTAG
AAGGTTCCCACATACCTTAAAGTTCAGCCTTTTATCGTTCCATATAAGAA
AAAAAATATTCCAAAATCACCGTTTACGAAAGAAAAGTTATCGATAACTG
AAAAATAGTGAAAAATTGCAATTCCGAAAAAAGAGCAAAACGGAATTGAG
CAAGCTAAGTGTTTTGGTGTAATTTATTAAGATAGAACTTGCATTTCCTA
GTAGACCATTAGAATGCTATTAAAATGATATTAATTATTGTGCCTTGTGT
TCTTAGGGTAAACTCTTAAAGAAACATGCGTACCCGCAAGTTGTTGTAGT
TTTTAGATTCTATTTCTTTGCCTTCTACAACCTGCTAAAAATATATATAA
ACCGAAAATAATAAATAGTAAGGGTGTACTTTAGATAAGACTAATACTCT
CATCAGTAAGCCATAACACTTAACATACTTTAAGGTGTTCTTCTTAAGAA
AAGTAATATGGGAAAGTAAGTTTGCTCCACGAATAAAAACTTTTCCTAAA
AATCTACCCTTACTCACTTGAAAAAAAAACCTCGGAAAATTAAGAAGACA
AATTGATATGAAAAAATACTTCAACTGAAGTTCAATACTTGATACTTACA
GGTACCAACTTTGATAATGACATTTTTATAATAAAAGCTTAATTAAAATT
GGCAATCTCTATTTAAGGAAGCAAAACAATAA

Coding sequence (CDS) from alignment at scaffold_496:343843..345924-

>TCONS_00069237 ID=TCONS_00069237|Name=TCONS_00069237|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_496:343843..345924- (Clytia hemisphaerica)
GAATTCAAAGGTCCTTTCTTCAATGGTGATCATTTTGGATATGTTGATAT
AATGGTGGTACCTTTCTTATTACGATTGGATGTTCTTAAGCATTTCCGTA
ATTTTCATCCAGCCGATGAAATACCAGATGCAACGTTAAAACAACGTTTT
CTGGACTGGGATAAAGCATTAAGAAACCACCATGCTGTTGCTCCGACCAT
CGCTACTGTCCAACAATTTGTAGAGAAGTACAATGGGAAATATGATGATT
AACTATACATTTTTACTCTTGAGCTCTCTTTTCATTTTAGGAACACTAAA
ACAATACAGAAGAATAATACCAAAATGACTGCAGTTGAAAAATTATTAAA
ATTATATAGCGCTTGGTCTTGCCCGTATGCTCAACGAGCTTGGATTGGTT
TATTATTCAAGGAGATTCCTTTTGATTATATAGAACAAGACCCTTACAAC
AAGACACCTGAATGGTTGGCAATAAACCCACGTGGTCTTGTCCCTGCAAT
GGTATTGGCTGATGGAAAAGTAGTGTATGAAAGCTCAATTTGTCTTGAAT
ACCTGGACGAAGCTTATCCTGAAACAGCGAATCAAATTTTACCAAAAGAT
GCTTATCAGAGGGCGTATTGTCGTATTTGGGGCGACTTCGTTTCGGGCAA
TATAGGAGCGCCCTTGTATGCTATTTTATCCAAGAAAGGAGAAGAAAGAG
AAGAGTCAAAAAAGAAATTGGTTGCTAAGCTTGAACAGTTTATGAAGGAA
TTCAAAGGTCCTTTCTTCAATGGTGATCATTTTGGATATGTTGATATAAT
GGTGGTACCTTTCTTATTACGATTGGATGTTCTTAAGCATTTCCGTAATT
TTCATCCAGCCGATGAAATACCAGATGCAACGTTAAAACAACGTTTTCTG
GACTGGGATAAAGCATTAAGAAACCACCATGCTGTTGCTCCGACCATCGC
TACTGTCCAACAATTTGTAGAGAAGTACAATGGGAAATATGATGATTAAC
TATACATTTTTACTCTTGAGCTCTCTTTTCATTTTAGGAACACTAAAACA
ATACAGAAGAATAATACCAAAATGACTGCAGTTGAAAAATTATTAAAATT
ATATAGCGCTTGGTCTTGCCCGTATGCTCAACGAGCTTGGATTGGTTTAT
TATTCAAGGAGATTCCTTTTGATTATATAGAACAAGACCCTTACAACAAG
ACACCTGAATGGTTGGCAATAAACCCACGTGGTCTTGTCCCTGCAATGGT
ATTGGCTGATGGAAAAGTAGTGTATGAAAGCTCAATTTGTCTTGAATACC
TGGACGAAGCTTATCCTGAAACAGCGAATCAAATTTTACCAAAAGATGCT
TATCAGAGGGCGTATTGTCGTATTTGGGGCGACTTCGTTTCGGGCAATAT
AGGAGCGCCCTTGTATGCTATTTTATCCAAGAAAGGAGAAGAAAGAGAAG
AGTCAAAAAAGAAATTGGTTGCTAAGCTTGAACAGTTTATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043150XLOC_043150Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069237-proteinTCONS_00069237-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069237-exon-scaffold_496-1575043694:345429..345924TCONS_00069237-exon-scaffold_496-1575043694:345429..345924Clytia hemisphaericaexon
TCONS_00069237-exon-scaffold_496-1575043694:343843..344907TCONS_00069237-exon-scaffold_496-1575043694:343843..344907Clytia hemisphaericaexon
TCONS_00069237-exon-scaffold_496-1510915933:345429..345924TCONS_00069237-exon-scaffold_496-1510915933:345429..345924Clytia hemisphaericaexon
TCONS_00069237-exon-scaffold_496-1510915933:343843..344907TCONS_00069237-exon-scaffold_496-1510915933:343843..344907Clytia hemisphaericaexon
TCONS_00069237-exon-scaffold_496-1491911889:345429..345924TCONS_00069237-exon-scaffold_496-1491911889:345429..345924Clytia hemisphaericaexon
TCONS_00069237-exon-scaffold_496-1491911889:343843..344907TCONS_00069237-exon-scaffold_496-1491911889:343843..344907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:343843..345924 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.43187	5.52723	6.35822	7.1507	2.37095	1.06262	4.28458	3.94801	8.64608	7.77881	6.4603	7.25267	7.53927	7.79336	7.22673	7.85133	13.2574	11.8116	10.0421	8.2899	30.0395	29.7005	9.2669	10.5586	5.26849	4.57628	7.62808	5.91367	7.54348	5.04461
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005442GST_omega
IPR004045Glutathione_S-Trfase_N
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004364glutathione transferase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004364 glutathione transferase activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00069237 vs. Swiss-Prot (Human)
Match: GSTO1 (Glutathione S-transferase omega-1 OS=Homo sapiens GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.973e-18
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 2 
Query:   86 EKLLKLYSAWSCPYAQRAWIGLLFKEIPFDYIEQDPYNKTPEWL-AINPRGLVPAMVLADGKVVYESSICLEYLDEAYPETANQILPKDAYQRAYCRIWGDF---VSGNIGAPLYAILXXXXXXXXXXXXXLVAKLEQFMKEFKGPFFNGDHFGYVDIMVVPFLLRLDVLKHFRNFHPADEIPDATLKQRFLDWDKALRNHHAVAPTIATV---QQFVEKY 727
            E  +++YS   CP+A+R  + L  K I  + I  +  NK PEW    NP GLVP +  + G+++YES+I  EYLDEAYP    ++LP D Y++A  ++  +    V   +G+ + +   +     +E  +K   KLE+ +   K  FF G+    +D ++ P+  RL+ +K        +E  D T K +   W  A++    V+  + +    Q F+E Y
Sbjct:   21 EGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNK-PEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYP--GKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMK-------LNECVDHTPKLKL--WMAAMKEDPTVSALLTSEKDWQGFLELY 229
The following BLAST results are available for this feature:
BLAST of TCONS_00069237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTO18.973e-1830.32Glutathione S-transferase omega-1 OS=Homo sapiens ... [more]
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