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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069244 ID=TCONS_00069244|Name=TCONS_00069244|organism=Clytia hemisphaerica|type=transcript|length=3623bpRun BLAST on NCBI transcript from alignment at scaffold_496:396756..407284- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069244 ID=TCONS_00069244|Name=TCONS_00069244|organism=Clytia hemisphaerica|type=transcript|length=10529bp|location=Sequence derived from alignment at scaffold_496:396756..407284- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069244 vs. Swiss-Prot (Human)
Match: TITIN (Titin OS=Homo sapiens GN=TTN PE=1 SV=4) HSP 1 Score: 104.375 bits (259), Expect = 3.248e-22 Identity = 128/516 (24.81%), Postives = 191/516 (37.02%), Query Frame = 3
Query: 507 RLESSDSGLYVVECENKNGTVEKEFEIEVEGKSXXXXXXXXXXQLQSLVSASTNPNKPAFKIKLQDIEVVSFSAVRFEVVVKGDPEPEITWYKNNEIIDDDDRNFLQEEEEDGTCALVIREVSTNDRGTYKCMAKNRFGKAMTTAELFVEDHGFESDDSESELGGRSLPRXXXXXXXXXXXXXXXXXXXHAQIILPMRDRHATIGSSAKFSCRAQSIKPHIPVEWYHDDKPVDLGCGRIKAAVAEEGELFTLNLRNVQMSDAGKYKIVFKLPNETLTSSANLNVDEGRKTEFGVSSRSSDXXXXXXXXXXXXXXXXXXXXGQEEPTFVLEPKDKTVVEGNQLKLTASVNGKPTPLVEWYKENSLLKSSSTIDIQATRNLHNMVIRKATTKDAGVYRCTARNEAGQ--CTVEVNIKIDTKSNKPKLSPNHPAFTRELEDFYEAEEGNDVEMKVEFTGKPKPRIHWEKNGKNIVSIKRVKIHEEDGASQLLIKALRDTDFGDYSCTISNFHGNTKSTS 2048
+++ +DSG Y+ + EN G V + V Q Q L P+F +L+D++ V F+ + G ++WYK+ + + D +Q D T L I + + G Y C A N G A ++A L + + G++ P I L D A +G SA F C +P I V W D + + G G+ + + E T+ V D+G+Y + +A LN+ E R + R S+T EE EGN KL V G V WYK N ++ +S +I N + +RKA DAG+Y C N+AG CT + IK + KP P F + L EG V++ G RI W K G+ I R G + L ++ + D GDY C SN G+ + S
Sbjct: 8949 QVDINDSGEYICKAENSVGEVSASTFLTV--------------QEQKL--------PPSFSRQLRDVQETVGLPVVFDCAISGSEPISVSWYKDGKPLKDSPN--VQTSFLDNTATLNIFKTDRSLAGQYSCTATNPIGSASSSARLILTE-------------GKNPP--------------------FFDIRLAPVD--AVVGESADFECHVTGTQP-IKVSWAKDSREIRSG-GKYQISYLENSAHLTV--LKVDKGDSGQYTCYAVNEVGKDSCTAQLNIKE-RLIPPSFTKRLSETV--------------------EE------------TEGNSFKLEGRVAGSQPITVAWYKNNIEIQPTSNCEITFKNNTLVLQVRKAGMNDAGLYTCKVSNDAGSALCTSSIVIK---EPKKP------PVFDQHLTPV-TVSEGEYVQLSCHVQGSEPIRIQWLKAGREIKPSDRCSFSFASGTAVLELRDVAKADSGDYVCKASNVAGSDTTKS 9358 HSP 2 Score: 103.219 bits (256), Expect = 6.992e-22 Identity = 108/463 (23.33%), Postives = 183/463 (39.52%), Query Frame = 3
Query: 678 PAFKIKLQDIEVVSFSAVRFEVVVKGDPEPEITWYKNNEIIDDDDRNFLQEEEEDGTCALVIREVSTNDRGTYKCMAKNRFGKAMTTAELFVEDHGFESDDSESELGGRSLPRXXXXXXXXXXXXXXXXXXXHAQIILPMRDRHATIGSSAKFSCRAQSIKPHIPVEWYHDDKPVDLGCGRIKAAVAEEGELFTLNLRNVQMSDAGKYKIVFKLPNE--TLTSSANLNVDEGRKTEFGVSSRSSDXXXXXXXXXXXXXXXXXXXXGQEEPTFVLEPKDKTVVE-GNQLKLTASVNGKPTPLVEWYKENSLLKSSSTIDIQATRNLHNMVIRKATTKDAGVYRCTARNEAG--QCTVEVNIKIDTKSNKPKLSPNHPAFTRELEDFYEAEEGNDVEMKVEFTGKPKPRIHWEKNGKNIVSIKRVKIHEEDGASQLLIKALRDTDFGDYSCTISNFHGNTKSTSC 2051
P+F KL+ ++ + S + E +V G I W+K+++ I ++ + D T L I ++ D GTY C A N+ G + L V++ + + +S+ D + ++ L A +G +A + ++W+ D+K + G R +V ++ +L L + +D+G Y + +L N+ T TS A L V +E P F+ +P V+ G + G P V WY + + + + I L I A +++G Y C ARN+AG C++E+ +K P F REL+ E + +DVE++ E TG P + W KN + I S K+ + + L I +D G+Y C +SN G S SC
Sbjct: 5602 PSFTKKLKKMDSIKGSFIDLECIVAGSHPISIQWFKDDQEISASEK--YKFSFHDNTAFLEISQLEGTDSGTYTCSATNKAGHNQCSGHLTVKEPPYFVEKPQSQ-----------------------DVNPNTRVQL-----KALVGGTAPMT-----------IKWFKDNKELHSGAAR---SVWKDDTSTSLELFAAKATDSGTY--ICQLSNDVGTATSKATLFV-------------------------------------KEPPQFIKKPSPVLVLRNGQSTTFECQITGTPKIRVSWYLDGNEITAIQKHGISFIDGLATFQISGARVENSGTYVCEARNDAGTASCSIELKVK------------EPPTFIRELKPV-EVVKYSDVELECEVTGTPPFEVTWLKNNREIRSSKKYTLTDRVSVFNLHITKCDPSDTGEYQCIVSNEGG---SCSC 5965 HSP 3 Score: 101.679 bits (252), Expect = 2.274e-21 Identity = 107/471 (22.72%), Postives = 170/471 (36.09%), Query Frame = 3
Query: 678 PAFKIKLQDIEVVSFSAVRFEVVVKGDPEPEITWYKNNEIIDDDDRNFLQEEEEDGTCALVIREVSTNDRGTYKCMAKNRFGKAMTTAELFVEDHGFESDDSESELGGRSLPRXXXXXXXXXXXXXXXXXXXHAQIILPMRDRHATIGSSAKFSCRAQSIKPHIPVEWYHDDKPVDLGCGRIKAAVAEEGELFTLNLRNVQMSDAGKYKIVFKLPNETLTSSANLNVDEGRKTEFGVSSRSSDXXXXXXXXXXXXXXXXXXXXGQEEPTFVLEPKDKTVVEGNQLKLTASVNGKPTPLVEWYKENSLLKSSSTIDIQATRNLHNMVIRKATTKDAGVYRCTARNEAGQ--CTVEVNIKIDTKSNKPKLSPNHPAFTRELEDFYEAEEGNDVEMKVEFTGKPKPRIHWEKNGKNIVSIKRVKIHEEDGASQLLIKALRDTDFGDYSCTISNFHGNTKSTSCLRLCSDGTPDI 2084
P F +L+ ++V + + + G PE ++WYK + + + + LV +V ND G Y C A+N G+ + L V++ S +RD T+G F C +P I V WY D KP+ ++ + + TLN+ S AG+Y P + +SSA L + EG+ F L P D V G V G V W K++ ++S I N ++ + K D+G Y C A NE G+ CT ++NIK +L P P+FT+ L + E EGN +++ G + W KN I +I ++ L ++ D G Y+C +SN G+ TS + + P +
Sbjct: 8888 PYFVKQLEPVKVSVGDSASLQCQLAGTPEIGVSWYKGDTKLRPT--TTYKMHFRNNVATLVFNQVDINDSGEYICKAENSVGEVSASTFLTVQEQKLPPSFSRQ-----------------------------------LRDVQETVGLPVVFDCAISGSEP-ISVSWYKDGKPLK-DSPNVQTSFLDNTA--TLNIFKTDRSLAGQYSCTATNPIGSASSSARLILTEGKNPPFF--------------------------------DIRLAPVDAVV--GESADFECHVTGTQPIKVSWAKDSREIRSGGKYQISYLENSAHLTVLKVDKGDSGQYTCYAVNEVGKDSCTAQLNIK-------ERLIP--PSFTKRLSETVEETEGNSFKLEGRVAGSQPITVAWYKNNIEIQPTSNCEITFKNNTLVLQVRKAGMNDAGLYTCKVSNDAGSALCTSSIVIKEPKKPPV 9274 HSP 4 Score: 98.2117 bits (243), Expect = 2.467e-20 Identity = 103/451 (22.84%), Postives = 169/451 (37.47%), Query Frame = 3
Query: 693 KLQDIEVVSFSAVRFEVVVKGDPEPEITWYKNNEIIDDDDR---NFLQEEEEDGTCALVIREVSTNDRGTYKCMAKNRFGKAMTTAELFVEDHGFESDDSESELGGRSLPRXXXXXXXXXXXXXXXXXXXHAQIILPMRDRHATIGSSAKFSCRAQSIKPHIPVEWYHDDKPVDLGCGRIKAAVAEEGELFTLNLRNVQMSDAGKYKIVFKLPNETLTSSANLNVDEGRKTEFGVSSRSSDXXXXXXXXXXXXXXXXXXXXGQEEPTFVLEPKDKTVVEGNQLKLTASVNGKPTPLVEWYKENSLLKSSSTIDIQATRNLHNMVIRKATTKDAGVYRCTARNEAGQ--CTVEVNIKIDTKSNKPKLSPNHPAFTRELEDFYEAEEGNDVEMKVEFTGKPKPRIHWEKNGKNIVSIKRVKIHEEDGASQLLIKALRDTDFGDYSCTISNFHG 2030
K + I+V + E V G PE W+K+ + + D++ +F + L I V+ +D G Y +N GK TA L V D R++P +++ + GSS C+ P I V W+H+ + G + + + + T+N+ ++ SD+G Y + + SA L V +E P+FV +P V+ G + T+ V G P V W+K +S L ++ ++ + + T +G Y C NEAG+ CT + IK K F + L D Y E+G + ++ FTG P + W+KNG N+ +R I + ++ L I + D G Y+C I N G
Sbjct: 8518 KPESIKVTTGDTCTLECTVAGTPELSTKWFKDGKELTSDNKYKISFFNK-----VSGLKIINVAPSDSGVYSFEVQNPVGKDSCTASLQVSD--------------RTVP---------------------PSFTRKLKETNGLSGSSVVMECKVYG-SPPISVSWFHEGNEISSG-RKYQTTLTDNTCALTVNM--LEESDSGDYTCIATNMAGSDECSAPLTV-------------------------------------REPPSFVQKPDPMDVLTGTNVTFTSIVKGTPPFSVSWFKGSSELVPGDRCNVSLEDSVAELELFDVDTSQSGEYTCIVSNEAGKASCTTHLYIKAPAK------------FVKRLND-YSIEKGKPLILEGTFTGTPPISVTWKKNGINVTPSQRCNITTTEKSAILEIPSSTVEDAGQYNCYIENASG 8874 The following BLAST results are available for this feature:
BLAST of TCONS_00069244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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