TCONS_00069467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069467
Unique NameTCONS_00069467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069467 ID=TCONS_00069467|Name=TCONS_00069467|organism=Clytia hemisphaerica|type=transcript|length=907bp
GTTGaagaaatgaaagaatttaTGAAAAGCAACGGTGAGGATGAACGTCT
GTTTGGGAAGGTAAAGATACGTATCAATAATGCAAGATCAGCAGTAAAGT
CACGTGCTGCAAAACGAGCTAAAGCGATGGGACTTGAAAAATAGGCTTCC
TCATCTAAAACTCCTATCGCCGATGCGAATTTATTTTTGTACATGGTGGG
AAGTATCCTCGATGGTCGGAAGTATTCATCTCGAAGGTCGGAAGTAGCAT
CGCCAGTCGGAAGCATCTCGAACTTAGAAAACATAGTTTACGATGGTCGT
ATGTATGGCGATCGTGGTCGGAGGTATGGTGATCATAACAGCTAGCCTTA
CTCGCGAGATGCTGCATTCGACGTAGAGTAAAATTACTTGCAAATGAATA
AAGCCGTCGTTTTGTCTGCCGTTGAAAGCAAGATTTGGCTGATTCTGCAA
TAATACGTTTTAACTTCCGACCGTCGAGAGAAGATACTTCTGACCATCGA
AATTAGATTTTCTAAGTTTAAGATCCGACTTCCGACTGCCGATGCTAATT
CCGACCGTCGAGATGAGATACTTCCGACCATCGAGGATACTTTCTACCAA
TGTGCGAAAAAAATCGCATCGTCGATTATGATAATCAAGAATTTGAAAGT
TGGAAATTAAAGATGTTTTATTTGTTTAAAGAAACTGCCATCATGGGTAT
CATAAACATTGGTTACTTAACCTTAACGAAAAAGAGTTGCTGTTCCCTGA
TGTAAAAGTTTTATAGGGTAACTTTATTGGCCATAATAAtgaatgaacaa
atttttcggGGAAGACTAGCGattccttgaaaattttaagcGAACTTTAA
GGTCTGAGTCaaacggccgactttctgccttctacctcttgggtacctaa
tagccgg
Run BLAST on NCBI

transcript from alignment at scaffold_50:258628..262163-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069467 ID=TCONS_00069467|Name=TCONS_00069467|organism=Clytia hemisphaerica|type=transcript|length=3536bp|location=Sequence derived from alignment at scaffold_50:258628..262163- (Clytia hemisphaerica)
GTTGAAGAAATGAAAGAATTTATGAAAAGCAACGGTGAGGATGAACGTCT
GTTTGGGAAGGTAAAGATACGTATCAATAATGCAAGATCAGCAGTAAAGT
CACGTGCTGCAAAACGAGCTAAAGCGATGGGACTTGAAAAATAGGTATGT
TTTGACTTTGACGTTCAGTGGATTGCAAGGANGGGACTTGAAAAATAGGT
ATGTTTTGACTTTGACGTTCAGTGGATTGCAAGGATTTTTTATAGAATCT
GGAAACATGAAAAGTCAAAGGGCAATCAAGGTGTTTCTATTGTTAAAAAA
AATGATACGCAAGCTTCTTCCTGAAAGCACAACTGTCATAGGGACCATTC
AAAAACTACGTATACGCTCTGAGGGTGAGGGGGGTCACTAGAAGGGGGTC
TATCAAGAATTGTATGTTGGGTATGAATAAAAAGATAAAGTGTTTTTTAT
ATAACTTAGCGATACGAAACGATTTAGCGAGTTTCAATTTTACGAAAAGG
GCGAAAATTCGCGAAAGTGAAAGGGAGGGAGGAGCTGACCCTCCGATATC
ATCGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTGTTTACAGGCTTCCTCATCTAAAACTCCTATCGCCGA
TGCGAATTTATTTTTGTACATGGTGGGAAGTATCCTCGATGGTCGGAAGT
ATTCATCTCGAAGGTCGGAAGTAGCATCGCCAGTCGGAAGCATCTCGAAC
TTAGAAAACATAGTTTACGATGGTCGTATGTATGGCGATCGTGGTCGGAG
GTATGGTGATCATAACAGCTAGCCTTACTCGCGAGGTCTGTTCATCCGTA
CATCCGTACATGTTTAGTATACATTTCTTTTTTAAACTAGCCTTGGCTTG
GGGCCATCCATATAGTACGTACGCAGTGAAGGGGGGAGAGCAAAAGCGTA
TTGCGTAAGTACTATATGGACGACCTTCCATTTATTACCACCGTCACCCT
TTGCTCGGCACTTTTTTTCTGAGTTTTTAGCAAATTTGTCAGGTCAGACT
TTAAATCTCCTGATCTAGAAGGTAGTCAGACTGGTTTGGCAGAGGGGTAG
TAAACATCAAATCAATCCACTAGCGGACAGAATTCAGTAAGTCAGGACAA
AATTTGGTGACTTTCAGTTCTAGTGTGGTCGTTGAGTATAACTTACAGGA
AAATAATATAATTTGGCTAAAATTTTGACCCGACCTCCTTTAAAAAACGA
TTATGCCTCAGGAAAAATTTCCCCAAAATCCCACTGGTGGAACACCCTTT
TAAGGGGCAATTTCTATTTTCCCCAGGCAAAATCCCAAGGCCAATTTTTT
TTCGAATTTCAAAATTGATTTTCATGACATATCATATATGCCATTCGAAA
GCTTTCGAAAAAGTATATAGAAGACTTTTAAGCGAGTATAGCCGAATTCT
TAACCTAGCTCAACATATTTTGGCAAAAAAGGTCAATTTTTCGATCAAAT
TGAAAGTCACCGTCAAAATCAAGAAGCTCTCAATAGTGTCATTGTGGGTT
GGTTGCCCCTCCCCCCTTGAGATTTAAAAAATTCTGGTCCCACCCCCCCC
CCCCATTTTAAATCCCCCACCTAGAGTTTGAAAAATTTTCTTTGCCCCAA
TTGAAAAAATTTTGGTAGCCTGGGAGGCCCCGCAATTTCATGTGTTTTTA
CTCAAAATTGAGATTACCTAGAGATTTTCACACGTGCACCTAATCCCCCC
CTCCTTTGGCATTTTTTTCCAAAAAATATTTACGTTCGAATTAGAACTTA
AAAATTCGATTAAGGGCTACCTTTGACTTGGAGTACGAGGAGTAAGTGTT
CTTAGAGTTTCTTTATTTGTTTCTAGAAAATAATAAATTCTTGCTTTGAA
CCTTCTTTGTTCTTTGTCTACATTTTCTCATTGACAGATGCTGCATTCGA
CGTAGAGTAAAATTACTTGCAAATGAATAAAGCCGTCGTTTTGTCTGCCG
TTGAAAGCAAGATTTGGCTGATTCTGCAATAATACGTTTTAACTTCCGAC
CGTCGAGAGAAGATACTTCTGACCATCGAAATTAGATTTTCTAAGTTTAA
GATCCGACTTCCGACTGCCGATGCTAATTCCGACCGTCGAGATGAGATAC
TTCCGACCATCGAGGATACTTTCTACCAATGTGCGAAAAAAATCGCATCG
TCGATTATGATAATCAAGAATTTGAAAGTTGGAAATTAAAGATGTTTTAT
TTGTTTAAAGAAACTGCCATCATGGGTATCATAAACATTGGTTACTTAAC
CTTAACGAAAAAGAGTTGCTGTTCCCTGATGTAAAAGTTTTATAGGGTAA
CTTTATTGGCCATAATAATGAATGAACAAATTTTTCGGGGAAGACTAGCG
ATTCCTTGAAAATTTTAAGCGAACTTTAAGGTCTGAGTCAAACGGCCGAC
TTTCTGCCTTCTACCTCTTGGGTACCTAATAGCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043294XLOC_043294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069467-exon-scaffold_50-1575043694:262020..262163TCONS_00069467-exon-scaffold_50-1575043694:262020..262163Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1575043694:260279..260492TCONS_00069467-exon-scaffold_50-1575043694:260279..260492Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1575043694:258628..259176TCONS_00069467-exon-scaffold_50-1575043694:258628..259176Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1510915933:262020..262163TCONS_00069467-exon-scaffold_50-1510915933:262020..262163Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1510915933:260279..260492TCONS_00069467-exon-scaffold_50-1510915933:260279..260492Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1510915933:258628..259176TCONS_00069467-exon-scaffold_50-1510915933:258628..259176Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1491911889:262020..262163TCONS_00069467-exon-scaffold_50-1491911889:262020..262163Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1491911889:260279..260492TCONS_00069467-exon-scaffold_50-1491911889:260279..260492Clytia hemisphaericaexon
TCONS_00069467-exon-scaffold_50-1491911889:258628..259176TCONS_00069467-exon-scaffold_50-1491911889:258628..259176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:258628..262163 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.73869	0	0.506483	0.933891	0	0	1.27171	0	0	0	2.12776	0	0	0	0	4.7227	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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