TCONS_00069618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069618
Unique NameTCONS_00069618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069618 ID=TCONS_00069618|Name=TCONS_00069618|organism=Clytia hemisphaerica|type=transcript|length=782bp
GTTTCAACGTACCCAGTCAATTCCAGCCTACCCAGCTGATTTTACCTACC
CAGTCGATTCCCCCTACCCAGCCGATTTCACCGTGCCCAGCCGATTTCAC
CGTGCCCAGCTGATTCCCCCTATCCAGCTGATTCCCCCTATCCAGCCGAT
TTCATCGTACCCAGCTGATTTCACCGTACCCAGCTGATTTCACCATACCC
AGTCGATTCTCCCTACCCAGCCGATTCCCCCCTAACCAGCTGATTCCACC
GTACCCAGCCAATTTCACCGTACCCAACTGATCCACCTAGCTTATCTCAC
CCAAGCCAGCCAATCACATTTATCCAGCTGATCCCGTCTCATCCTTTCCC
AATGAATTCCATACATCCATCCACCCAGACGATCTCACCCTTTACCCAGC
CAAACTCATCCCTTCCCTCCCAATGATTCCATACATACGACATCCATCCA
CCCAGAAGATCCCACCCTACTGCCCAGCCAATCCCAAATCCCATCCAATA
CAATGTGATCCCTAACTTATCCTGCAAATTCAACCCTATCCTGCCAAATT
CCACCCTACCCTAATATGCGTCAAATTCCATCCATCCACAGATTAGATCA
GATCCCAGAATTGCAGAAACCCAGCTGAATCCATCATAACAAGCCAATCC
CATCCTGTCCTACCTCTAGCCATTCCCCACCCTATAACCAGAAGATTCAG
TGTTGGCTGATTTTACCCAACTGATCCTCCTATCCCATCATCCCAGATGA
TTGATCCCACAAGATCTGTATTTGATTTGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_502:210140..210921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069618 ID=TCONS_00069618|Name=TCONS_00069618|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at scaffold_502:210140..210921 (Clytia hemisphaerica)
TCACAAATCAAATACAGATCTTGTGGGATCAATCATCTGGGATGATGGGA
TAGGAGGATCAGTTGGGTAAAATCAGCCAACACTGAATCTTCTGGTTATA
GGGTGGGGAATGGCTAGAGGTAGGACAGGATGGGATTGGCTTGTTATGAT
GGATTCAGCTGGGTTTCTGCAATTCTGGGATCTGATCTAATCTGTGGATG
GATGGAATTTGACGCATATTAGGGTAGGGTGGAATTTGGCAGGATAGGGT
TGAATTTGCAGGATAAGTTAGGGATCACATTGTATTGGATGGGATTTGGG
ATTGGCTGGGCAGTAGGGTGGGATCTTCTGGGTGGATGGATGTCGTATGT
ATGGAATCATTGGGAGGGAAGGGATGAGTTTGGCTGGGTAAAGGGTGAGA
TCGTCTGGGTGGATGGATGTATGGAATTCATTGGGAAAGGATGAGACGGG
ATCAGCTGGATAAATGTGATTGGCTGGCTTGGGTGAGATAAGCTAGGTGG
ATCAGTTGGGTACGGTGAAATTGGCTGGGTACGGTGGAATCAGCTGGTTA
GGGGGGAATCGGCTGGGTAGGGAGAATCGACTGGGTATGGTGAAATCAGC
TGGGTACGGTGAAATCAGCTGGGTACGATGAAATCGGCTGGATAGGGGGA
ATCAGCTGGATAGGGGGAATCAGCTGGGCACGGTGAAATCGGCTGGGCAC
GGTGAAATCGGCTGGGTAGGGGGAATCGACTGGGTAGGTAAAATCAGCTG
GGTAGGCTGGAATTGACTGGGTACGTTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043354XLOC_043354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069618-exon-scaffold_502-1491911889:210140..210921TCONS_00069618-exon-scaffold_502-1491911889:210140..210921Clytia hemisphaericaexon
TCONS_00069618-exon-scaffold_502-1510915933:210140..210921TCONS_00069618-exon-scaffold_502-1510915933:210140..210921Clytia hemisphaericaexon
TCONS_00069618-exon-scaffold_502-1575043694:210140..210921TCONS_00069618-exon-scaffold_502-1575043694:210140..210921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:210140..210921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123832	0.0603776	0.270502	0.235404	0.333988	0.131961	0	0	0.0521752	0	0.062729	0	0	0	0.0351578	0	0	0	0	0	0.119727	0	0	0.0645415	0.265905	0	0	0.0906063	0	0.140033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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