TCONS_00069734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069734
Unique NameTCONS_00069734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069734 ID=TCONS_00069734|Name=TCONS_00069734|organism=Clytia hemisphaerica|type=transcript|length=709bp
AtatgcttgaaaaatcaaaaagtcaatCAGGTTACCACGTGAAATATCTC
CTTTGCTAAACGAAAGCCAAAAAGATCTCTTTTGCTACTAAACGATAGCC
AAAAGCTGAAAGTATCAACCAAATCGTAGTAGTAGTAGTAGTTATTTTCT
TATCGACAAGAGAAGGAAATAACAAGTACTAAGTGTTACTGTTCGCTTCT
GGAATAGGAAGAATATAAACAATCAAAGAAATCATTGGAAAAGAAACACA
GGAAAGTATTTTGATAAGTATAATTTTACTATTATtatcttttgtaattt
ttttgggagtttttcccaaaaagtttaAGGCATGTTTATCCCAATCGATA
TAAAACAGATTCAGGGGTTTATCAAGGGCACCGAAGTCTCCCATCAAGGG
ATTAAAACTAACCCAGCTGTACCTACATCGTGGTCAAAGTGTCAATAACA
ATCACTTTCAATCACTTTTGCCATGTCGTCAAGGTATTTTTGCTAATTCA
GATAATGCAACAGATATTGATTTTACAATTGAGTCTCGGGGGATAAAAAT
AATAGAACTTGCGATATTGCGAACGagtctcaaaaattaaaaagaaaacg
aCTTGCTGAGGCCAGTTCTGCTGACCACAAAAAAGCTAACAACAACACGA
AATAGCAATTACAGTTGtcaaataatcagaaaattaaagccaatgaactt
gaaaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_506:9172..9880

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069734 ID=TCONS_00069734|Name=TCONS_00069734|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_506:9172..9880 (Clytia hemisphaerica)
aattttttcaagttcattggctttaattttctgattatttgaCAACTGTA
ATTGCTATTTCGTGTTGTTGTTAGCTTTTTTGTGGTCAGCAGAACTGGCC
TCAGCAAGtcgttttctttttaatttttgagactCGTTCGCAATATCGCA
AGTTCTATTATTTTTATCCCCCGAGACTCAATTGTAAAATCAATATCTGT
TGCATTATCTGAATTAGCAAAAATACCTTGACGACATGGCAAAAGTGATT
GAAAGTGATTGTTATTGACACTTTGACCACGATGTAGGTACAGCTGGGTT
AGTTTTAATCCCTTGATGGGAGACTTCGGTGCCCTTGATAAACCCCTGAA
TCTGTTTTATATCGATTGGGATAAACATGCCTtaaactttttgggaaaaa
ctcccaaaaaaattacaaaagataATAATAGTAAAATTATACTTATCAAA
ATACTTTCCTGTGTTTCTTTTCCAATGATTTCTTTGATTGTTTATATTCT
TCCTATTCCAGAAGCGAACAGTAACACTTAGTACTTGTTATTTCCTTCTC
TTGTCGATAAGAAAATAACTACTACTACTACTACGATTTGGTTGATACTT
TCAGCTTTTGGCTATCGTTTAGTAGCAAAAGAGATCTTTTTGGCTTTCGT
TTAGCAAAGGAGATATTTCACGTGGTAACCTGattgactttttgattttt
caagcataT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043419XLOC_043419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069734-exon-scaffold_506-1491911889:9172..9880TCONS_00069734-exon-scaffold_506-1491911889:9172..9880Clytia hemisphaericaexon
TCONS_00069734-exon-scaffold_506-1510915933:9172..9880TCONS_00069734-exon-scaffold_506-1510915933:9172..9880Clytia hemisphaericaexon
TCONS_00069734-exon-scaffold_506-1575043694:9172..9880TCONS_00069734-exon-scaffold_506-1575043694:9172..9880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:9172..9880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.567644	0.830313	0.482037	0.392998	0.191375	0.151227	0.729796	0.427016	0.358757	0.592505	0.359437	0.519816	0.802234	0.0980151	1.45047	1.38362	1.49145	0.764343	0.8297	0.868221	1.23487	0.903488	0	0.887575	0.380909	0.271962	1.75129	1.24602	1.33884	2.40717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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