TCONS_00069735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069735
Unique NameTCONS_00069735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069735 ID=TCONS_00069735|Name=TCONS_00069735|organism=Clytia hemisphaerica|type=transcript|length=552bp
aattagacgaggaaGAATGTGCATTTTTGGCTATGAAAACAATGAATGAC
ATCAAAGAATCAAACATTCTATCAGCAATATCCTATGTGGAGGAAACAAC
GCGAAACCAAGCCCTCAGCCCAACCTGGTTTCAGCAAAGAGCTGGGCGCA
TAACCGGATCCATATTTCGTAAAGTTTATATGGCAAACATTGATGACCCA
AGTAAATCTCTTGTCACAAAAATTTGCTCTGACACTGCAAAAAGGATCAA
AGCAGAGGCCCTTGAATGGGGTAGATCTAAAGAAGATGGAGCATTAGCCC
TTTACACTGAGGTTCATGGAAGCACAAACTTTGTCCCTGGCGATTGTGAG
CCAATTTCAGATTGTTTTATACATTATGATTTGAATGTTCTGACTTATGG
TTTAGCTATTTATCAAGACATTCCTTGGTTTTCAGCATCCCCTGATGCTA
TTGTTCACTGCTCTTGTTGTGGATATGGGGTAGTCGAAATCAAATGTCCA
TATGCCATTGCGAAAAGTGATACGTTAACCTTAAAAGGAGAAATTGATGC
TG
Run BLAST on NCBI

protein sequence of TCONS_00069735-protein

>TCONS_00069735-protein ID=TCONS_00069735-protein|Name=TCONS_00069735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
LDEEECAFLAMKTMNDIKESNILSAISYVEETTRNQALSPTWFQQRAGRI
TGSIFRKVYMANIDDPSKSLVTKICSDTAKRIKAEALEWGRSKEDGALAL
YTEVHGSTNFVPGDCEPISDCFIHYDLNVLTYGLAIYQDIPWFSASPDAI
VHCSCCGYGVVEIKCPYAIAKSDTLTLKGEIDA
Run BLAST on NCBI

transcript from alignment at scaffold_506:22488..23039

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069735 ID=TCONS_00069735|Name=TCONS_00069735|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at scaffold_506:22488..23039 (Clytia hemisphaerica)
CAGCATCAATTTCTCCTTTTAAGGTTAACGTATCACTTTTCGCAATGGCA
TATGGACATTTGATTTCGACTACCCCATATCCACAACAAGAGCAGTGAAC
AATAGCATCAGGGGATGCTGAAAACCAAGGAATGTCTTGATAAATAGCTA
AACCATAAGTCAGAACATTCAAATCATAATGTATAAAACAATCTGAAATT
GGCTCACAATCGCCAGGGACAAAGTTTGTGCTTCCATGAACCTCAGTGTA
AAGGGCTAATGCTCCATCTTCTTTAGATCTACCCCATTCAAGGGCCTCTG
CTTTGATCCTTTTTGCAGTGTCAGAGCAAATTTTTGTGACAAGAGATTTA
CTTGGGTCATCAATGTTTGCCATATAAACTTTACGAAATATGGATCCGGT
TATGCGCCCAGCTCTTTGCTGAAACCAGGTTGGGCTGAGGGCTTGGTTTC
GCGTTGTTTCCTCCACATAGGATATTGCTGATAGAATGTTTGATTCTTTG
ATGTCATTCATTGTTTTCATAGCCAAAAATGCACATTCttcctcgtctaa
tt

Coding sequence (CDS) from alignment at scaffold_506:22488..23039

>TCONS_00069735 ID=TCONS_00069735|Name=TCONS_00069735|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_506:22488..23039 (Clytia hemisphaerica)
AGCATCAATTTCTCCTTTTAAGGTTAACGTATCACTTTTCGCAATGGCAT
ATGGACATTTGATTTCGACTACCCCATATCCACAACAAGAGCAGTGAACA
ATAGCATCAGGGGATGCTGAAAACCAAGGAATGTCTTGATAAATAGCTAA
ACCATAAGTCAGAACATTCAAATCATAATGTATAAAACAATCTGAAATTG
GCTCACAATCGCCAGGGACAAAGTTTGTGCTTCCATGAACCTCAGTGTAA
AGGGCTAATGCTCCATCTTCTTTAGATCTACCCCATTCAAGGGCCTCTGC
TTTGATCCTTTTTGCAGTGTCAGAGCAAATTTTTGTGACAAGAGATTTAC
TTGGGTCATCAATGTTTGCCATATAAACTTTACGAAATATGGATCCGGTT
ATGCGCCCAGCTCTTTGCTGAAACCAGGTTGGGCTGAGGGCTTGGTTTCG
CGTTGTTTCCTCCACATAGGATATTGCTGATAGAATGTTTGATTCTTTGA
TGTCATTCATTGTTTTCATAGCCAAAAATGCACATTCttcctcgtctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043420XLOC_043420Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069735-proteinTCONS_00069735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069735-exon-scaffold_506-1491911889:22488..23039TCONS_00069735-exon-scaffold_506-1491911889:22488..23039Clytia hemisphaericaexon
TCONS_00069735-exon-scaffold_506-1510915933:22488..23039TCONS_00069735-exon-scaffold_506-1510915933:22488..23039Clytia hemisphaericaexon
TCONS_00069735-exon-scaffold_506-1575043694:22488..23039TCONS_00069735-exon-scaffold_506-1575043694:22488..23039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:22488..23039 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.13298	0	0	0	0	0	0	0	0	0.0630296	0	0.0795859	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019080YqaJ_viral_recombinase
IPR011604Exonuc_phg/RecB_C
IPR011335Restrct_endonuc-II-like
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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