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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069755 ID=TCONS_00069755|Name=TCONS_00069755|organism=Clytia hemisphaerica|type=transcript|length=1417bp
AATCTCTGTACTTTGACTTGTatcttttatacttttttacaGTTGAGATA
TGAAAATATTACACGATTTATTATGGTGATGTTTGTGACGAATTAAACAT
TGAATATCTACCCAACAAAGTTTACCTGCTGTCATCATAGTCTGAAAACA
TGGCTGGAGAATGGATGAAGCCCACCCTGATCCTTTCATTGTATGGTTTC
TTCAAAGAGATGAAGCCATCGGAATCATTCCTCACACCATACCTCAACAG
CACATTTAAAAACATCCCCAAGAAAACCATTTCTGATGAAATCTACCCTA
TATCCACATATTCGTATCTCGTCTTCTTATTCTTAGTACTCATGACCACA
GACTTCCTACGTTATAAACCGCTAGTCATCATTGAATCCTTAGCTTACCT
GGCCACACGTGTTATCTTAGTTTGGGGTCAAGGTGTTTTGATCATGCAGA
TTATGCAAATGACTTATGGTCTTGCAAGTGCCACTGAAGTTGCTTATTAT
TCCTACATCTATGCACTTGTAGATCGTGAGCATTACCAGAAAGTGTCCAG
TTATACTCGACTTGCTGTTTTAGCTGGCAAAGGTGTTGGTGATTTGAGTG
GACAACTTCTGTTATCGACAAATACAGTCAATCTATTACAATTGAATTAC
GTTTCGTTGGCCAGTGTGGCTGTTTCAGTGATCGCTGCCTGTTTCTTACC
TAAAGTCACAGGTTCTGTATTTGGAACCATGAAAGAGGAGAAAGGATTCG
AACGGTTTGACAACGAGGAAAGGATAGACGATGAAGATCAAACCGACCAG
ATAACTTCCAGCAAAAACATTGTCCCACAAACTTGTTCCGTTAGATTGca
acaatattttaaaaatatttggcacacTTTCAAATCATGTTATTCTGATA
NAAACTTGTTCCGTTAGATTGcaacaatattttaaaaatatttggcacat
TTTCAAATCATGTTATTctgataaaaaacttttacaaTGGTCATGTTTTT
GGGCCATCGCAATGTGTGGTGGCCTACAAGTagaagattacgtcatgaac
ctGTGGTCAGCTTTGCAAGGTGATGAGATCAAGAAAGCTTACAATGGAGC
TGTTTTTGCTGCAGGCACCATAACAAGTGCCGTTTGTGTGTTTCTCTTTT
CTATCGCTAAAGTTGATTGGAACTCAGTATCGGAAGTTGTAATTGGTTGT
CTCTCTATCGTGCAAAGCACCATGGTCTTTAACATGGCGTGGACCAGTGA
CGTCACGATCGCTTACGTCATGTATGTGATTTTCAGAGCATCGTATGCTT
TCAGTTTGACTGTTGCAAGTATTTGGTTGGAACACTCTGGTCGCTGTTTG
TTTGCAAAGTATTTTGACGTTGATCGTTGTTGATAAAAATGGATTAGACC
TTCCTGAAAGCAAGCAG Run BLAST on NCBI transcript from alignment at scaffold_507:84599..90310+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069755 ID=TCONS_00069755|Name=TCONS_00069755|organism=Clytia hemisphaerica|type=transcript|length=5712bp|location=Sequence derived from alignment at scaffold_507:84599..90310+ (Clytia hemisphaerica)
AATCTCTGTACTTTGACTTGTatcttttatacttttttacaGTTGAGATA
TGAAAATATTACACGATTTATTATGGTGATGTTTGTGACGAATTAAACAT
TGAATATCTACCCAACAAAGTAAgtatctcatttaaaaaatacATCAGGT
GCTAGGtttctttatttattttcaagctAGATATTTTTAATGACCTCCGT
GTACCATCCCCCATTTTCCCTACAAATCAGTGATTTGACTAGAAAATGAA
AGTACAGTAGGTAAATTCTAGACGTGAAGTTAATTTAAATTCCAGTGGTT
TAATTAATTTGATCATACTTAATCTTTTTCTacatacttacttacttact
acacATCTTTCAAATCTATGTTCATTGCAATGAATTaattacagtatgtg
gcccccagaACGTCGGtcaaatttctctcaaatcgagaggaaaaaaagct
ttacaaaaatttttgctgcatgcgAAACTTTATTTCcgaaaagttctttt
tcaaaacttcaacaatatttttcaatcgctaggtagcttttttctgatGG
CCCCAAAAATATAGGTTTGCATTATTACCGAtttcatattttctttaaaa
tatgaACATATAAACctcattttttgcaaaatctagtCAAACAAATGTAT
GGTTCCAAGATTTTTTCCGTTACTCATTTTTAGAGTTTTCAGTTCCATCA
ATGCTGGTTCTAGgggccccaaaatactggtccacctttaagatgctata
ccTTTCACTCATCTTCTAAAGGTATTATTATTAGGTATTGagaaatgttt
tgatgttgatgttTGTTCAGCGTGATATTGGCTACTAATTTTTATGCGGA
GAAATATAAATCTCAAAAGTCCGTTTAAGGCTTaagctttttgataaaat
gaatgGTCCTGAAAAGTGGTACGGCGTAATTTGACAAGCTCCTTCTTTTA
GCCTTGCTTGAACACGAGCTCATTCTCGAGGAAAACAATAAGAAGACTAT
GATCAATTgaccattttttcaaatttgggaCGTAGCTTTTATGTTTTTGT
CATAATTTCATGAACTtcaatggggttatttgttccTCAGTTTTTGCACC
CGCAGGGCGCCTTCATGAGCAACGCGCTCGCGCGTTTAAAGATACGGTTT
GTCGGCTTTTTTGTAGGCCTGGTCGAATCTCGGAAAATCCATGTCCTGAT
TATTCAGATCAAATTTACTACGCTTCGATAATCTATTTTGAAATGCGAGA
GACAAAATCCAAACGATAACCCAGTTTTTGACTTGATAACTCAAACCTTG
CTTATATTCgtcttttatttcattttccttcGTAGGTTTTAATCTTTTCT
ACAGAGTTATTTGTTTAATCGTCGAGTGAatcgtttgttttgaaatatgt
GCTTTAATCTGTTTAATAAACGTTCTTCTGTTTGCGCTTTTGCTTTAAGC
CTTGTGTCCACTCCGGAAAGTTTGCAACGGATCGGTATGGATTGGAAcgt
tttctattgttttaaggATTATCTTCGACCCAGTTGCCACATATTTTTTT
CACGTAAACGGTTGTTCACGTGTTTGGATCAAAACAGATAAAATAATTCG
ATTTCTTTTGTATGAAAGTTGTAAACAGAAAGAATCTACTTTTAAAAAGT
CCGAAGTGGAATTTGGAAAACGATTCAGATcgcttttcttcttctttcca
atccgtactagactagtaaactagtcggttattacttataataaaataga
cgatgttatcgtccgtataatataatattatgatataacatagtttgtat
actataaaacgtaatatgtttcgcggcggatagatTCTGTGTTTACGGAC
GATATCAATTTGGCGCTTTTCTCGATTTTATCTTTGCCCTTACCGACCTT
GGAGAAGGGTCGGtgatttttgcggaaaatcccTGCAGATTTATAGACGA
ACTTGgtaagaaaaccaaaacaacacGGGAAGTAGGGAGTGAACTTTATC
CAAaaaatggttgttttctttGAGCAAGATGGTTCTGGGTCTGGTGAAGA
AAAGAAGAATGTTCTTGTATGATAATTTGGAGGCTGAAGACCTTACATAA
ACGCATTTGCTGTTTCTTAAGCTTTTTTGACAATATTAGTTAGAAGGGAT
TGTTATATTTCCTCAAGGCCCACAAACAAATTCTAACttagattttttgg
aaattttattaatttttataaattttaccaGTCAGACCCGACTGTTTGTT
AACATTTGTTCGAACCGGGCCGGCCGGTCACACCGctaaccaaaatccaa
aatttacGCTTTTCTACCAAAttgatatagtctaagacaacagctactcc
cgtaaaaaattcccgtcttcacgtttgttcctcttactTAGAtaagatga
aactcgtcttagactatagcatagtctaataataaaactgtcaatcaaat
aatgtaaaaactaattaaatattcagcgcccgtgagagaaaaggaaaata
accgactagaagctacttccaacgcctttttttcttcacctaaaatcgta
aggagagacatacagatttctgtatgtctgacccgtgcgggattgcattt
atttttctttctgtttattgcgtttttagaaatgctcgtttatttatatg
ttcccatgttcaatgttactatgaaatatcatttagtcaaaaaagttgga
tggaatctcaaaaacctaaaaaatgttgtaaaattaaacaacgtTTTTTT
GAGGGAAGTAGCTTCTAGTCGTTGAAATtcagaaaagagacgcaacttca
ccccttcgattctttttatttggagcttgattttttgtatatgggtctgt
tttcaacgactagtttactagtctaatcCGTACCGATCTGTTGCAAACTT
TCCGGTGGAGTGGACACATGGCTTTACGTATTTAAAAGATTTATTTAGAT
AAAGAGAATTAAAACTATAAAACTATAAAACTATAAAAACTAAATAAGAG
ACTTTTGCAGTAAAGCTTGTTTTGGTCGCTGAGCGCTTTTATACTTCCat
tgaaaattagataaaaagttGCGAAGTGCACCACGAGCAttaatgaatgt
tgaatgttgagcaattttggttttaaaatttcGATTTCTTTCGAACAACT
TCAATTGAAGAATAAAGATCATGGAGGATTTTGTTCTCAACTGACATTCA
TTTCTCTTTTACCTGTTCAGACTATATGTGCAAGAAGtgacatagtgtcc
tccccccttTGTAAAGTCAGAACCCCGACTTTGCCCCAGTTGTTGCTTGT
CTGAGAGGTGAACGTGCGAGTCGCACATTTACCCCAGACCAAGTAGCACT
GAAAGATCAAAAGCTGAACGAAGTCTTGTCGTCTTTCCGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNatattttcatttttatttatttatt
taaagacAATTAACTTTTGTAACACAAAAGACCCGTGCCGGGACTGGCTC
CGGTAATAGTATATACcagtttaagaaaaaaaatttttttaataaaaaag
atttctctTTTACTTTACCCTACTTTAGTGTCTTAGTGGTTGACTTTGCC
ATTTATATTTTTTCAGTATTCGATGATAGACACTGCTAACGTGTTTATGC
TATAGTGTCTGATTAAATGCTCTCTGGCACTCTTTCTGGTTATTCAAGGG
CTATGTTCGTGTAACACTTCCTCAAATTCGATACTCCCTTATGAGCGCGG
GCGTACCATGGCCTCTGCTATTGGCTagtataatttttgaaaacgaaggt
GATGTCTGTTTCATGAACTCAGTGCCGTcaaaaatcatcagaaagcaaag
ttcattCAGAAAGTAGGGTGGGAAAAAGTTCTATAAATGTTGATTCTAAG
ACTCGGAATTGAACCAAAAGAAATGTGCATACGCGCAGCTTCCGATTTAT
ATCAAGAAAAGTTTTGCATTTGAAAAGTATTATCCTGGCTgtatttcaat
ctttttccatttttcttacGCATAGGTATTTTACCTGTAAGTTTTTTTAA
TCGATGCCTCATTCCTGGATTGCTTGGAACTAAGACTATAAAACAATATA
GCATTGCTGTTTGTGGAATTTctatatttgctttatttctccAGGTTTAC
CTGCTGTCATCATAGTCTGAAAACATGGCTGGAGAATGGATGAAGCCCAC
CCTGATCCTTTCATTGTATGGTTTCTTCAAAGAGATGAAGCCATCGGAAT
CATTCCTCACACCATACCTCAACAGCACATTTAAAAACATCCCCAAGAAA
ACCATTTCTGATGAAATCTACCCTATATCCACATATTCGTATCTCGTCTT
CTTATTCTTAGTACTCATGACCACAGACTTCCTACGTTATAAACCGCTAG
TCATCATTGAATCCTTAGCTTACCTGGCCACACGTGTTATCTTAGTTTGG
GGTCAAGGTGTTTTGATCATGCAGATTATGCAAATGACTTATGGTCTTGC
AAGTGCCACTGAAGTTGCTTATTATTCCTACATCTATGCACTTGTAGATC
GTGAGCATTACCAGAAAGTGTCCAGTTATACTCGACTTGCTGTTTTAGCT
GGCAAAGGTGTTGGTGATTTGAGTGGACAACTTCTGTTATCGACAAATAC
AGTCAATCTATTACAATTGAATTACGTTTCGTTGGCCAGTGTGGCTGTTT
CAGTGATCGCTGCCTGTTTCTTACCTAAAGTCACAGGTTCTGTATTTGGA
ACCATGAAAGAGGAGAAAGGATTCGAACGGTTTGACAACGAGGAAAGGAT
AGACGATGAAGATCAAACCGACCAGATAACTTCCAGCAAAAACATTGTCC
CACAAACTTGTTCCGTTAGATTGcaacaatattttaaaaatatttggcac
acTTTCAAATCATGTTATTCTGATANAAACTTGTTCCGTTAGATTGcaac
aatattttaaaaatatttggcacatTTTCAAATCATGTTATTctgataaa
aaacttttacaaTGGTCATGTTTTTGGGCCATCGCAATGTGTGGTGGCCT
ACAAGTagaagattacgtcatgaacctGTGGTCAGCTTTGCAAGGTGATG
AGATCAAGAAAGCTTACAATGGAGCTGTTTTTGCTGCAGGCACCATAACA
AGTGCCGTTTGTGTGTTTCTCTTTTCTATCGCTAAAGTTGATTGGAACTC
AGTATCGGAAGTTGTAATTGGTTGTCTCTCTATCGTGCAAAGCACCATGG
TCTTTAACATGGCGTGGACCAGTGACGTCACGATCGCTTACGTCATGTAT
GTGATTTTCAGAGCATCGTATGCTTTCAGTTTGACTGTTGCAAGGTAGGT
TGGGTTGTTTTCTTTAGTTGGTATGAATACAGAAGATGAATGCCAAAACT
AATTAGTAGCAATAATTTTGTCGATAAGGTATATGTTTTCAACTTGTCAG
TATATTTTTCATGATTAAAGTTTTCAGATAGCAAATCGTTTGACGATGGA
TGGTTTTGGTTTAGTATTTGGTTGGAACACTCTGGTCGCTGTTTGTTTGC
AAAGTATTTTGACGTTGATCGTTGTTGATAAAAATGGATTAGACCTTCCT
GAAAGCAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00069755-exon-scaffold_507-1491911889:84599..84717 | TCONS_00069755-exon-scaffold_507-1491911889:84599..84717 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1510915933:84599..84717 | TCONS_00069755-exon-scaffold_507-1510915933:84599..84717 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1575043694:84599..84717 | TCONS_00069755-exon-scaffold_507-1575043694:84599..84717 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1491911889:88843..90042 | TCONS_00069755-exon-scaffold_507-1491911889:88843..90042 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1510915933:88843..90042 | TCONS_00069755-exon-scaffold_507-1510915933:88843..90042 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1575043694:88843..90042 | TCONS_00069755-exon-scaffold_507-1575043694:88843..90042 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1491911889:90213..90310 | TCONS_00069755-exon-scaffold_507-1491911889:90213..90310 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1510915933:90213..90310 | TCONS_00069755-exon-scaffold_507-1510915933:90213..90310 | Clytia hemisphaerica | exon |
| TCONS_00069755-exon-scaffold_507-1575043694:90213..90310 | TCONS_00069755-exon-scaffold_507-1575043694:90213..90310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_507 | supercontig | scaffold_507:84599..90310 + |
Blast
BLAST of TCONS_00069755 vs. Swiss-Prot (Human)
Match: S19A2 (Thiamine transporter 1 OS=Homo sapiens GN=SLC19A2 PE=1 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 4.057e-48 Identity = 104/267 (38.95%), Postives = 154/267 (57.68%), Query Frame = 3
Query: 162 WMKPTLILSLYGFFKEMKPSESFLTPYLNSTFKNIPKKTISDEIYPISTYSYLVFLFLVLMTTDFLRYKPLVIIESLAYLATRVILVWGQGVLIMQIMQMTYGLASATEVAYYSYIYALVDREHYQKVSSYTRLAVLAGKGVGDLSGQLLLSTNTVNLLQLNYXXXXXXXXXXXXXCFLPKVTGSVF-----GTMKEEKGFERFDNEERIDDEDQTDQITSSKNI---VPQTCSVRLQQY----------FKNIWHTFKSCYSDXNL 908
W PT +L YGFF ++PSE FLTPYL KN+ ++ + +EIYP+ TYSYLV LF V + TD+LRYKP+V+++ L+ + T +L++ QG+L +Q ++ YG+A+ATE+AYYSYIY++VD YQKV+SY R A L G VG + GQ+L+S +L LN +SL V+V+ A FLP S+F T + G + N + D ++ + ++I +P + K +W+ F CYS L
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHIPSTCQRVNGI-KVQNGGIVTDTPASNHLPGWEDIESKIPLNMEEPPVEEPEPKPDRLLVLKVLWNDFLMCYSSRPL 295 HSP 2 Score: 84.3445 bits (207), Expect = 1.068e-17 Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 1
Query: 931 FKNIWHIFKSCYSDKKLLQWSCFWAIAMCGGLQVEDYVMNLWSALQGDEIKKAYNGAVFAAGTITSAVCVFLFSIAKVDWNSVSEVVIGCLSIVQSTMVFNMAWTSDVTIAYVMYVIFRASYAFSLTVAS 1320
K +W+ F CYS + LL WS +WA++ CG QV +Y LW + YNG V A T+ AV VF K+ W++ E+ + S++ + V+ M ++ + Y YV+FR Y +T+A+
Sbjct: 279 LKVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYTQGLWEKVMPSRYAAIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIAT 408 HSP 3 Score: 24.2534 bits (51), Expect = 1.068e-17 Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 2
Query: 1319 VFGWNTLVAVCLQSILTLIVVDKNGLDLPESKQ 1417
VFG NT +A+ LQ++LTLIVVD +GL L + Q
Sbjct: 423 VFGVNTFIALALQTLLTLIVVDASGLGLEITTQ 455
The following BLAST results are available for this feature:
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