TCONS_00069859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069859
Unique NameTCONS_00069859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069859 ID=TCONS_00069859|Name=TCONS_00069859|organism=Clytia hemisphaerica|type=transcript|length=507bp
GTCTGGAATACAAGCAAAACCGCCGTCCCTGTGCTTCCACCAAACATACC
TTCCTCGTTTCGACTATGGGAATCAAATAGATAGTAAGAAGATTTATAGA
ATATGAAAGCCCTACTCGTTGAGCCCGCTAATATTATCCCGCTATTGTAG
CCAGCCGGTATATCAATGAAATTTCGACTTTCCGAAGACAAAGACGAAAC
ATTAGGAACTGTTCGTTCAAACtcgatttttgtattttctatcTGAATTT
GAAGGGGCAACTCACGGAGATCTAAAAATGTATCGACATATCCGAAACTA
GAGTACAAATCATTACCGGTATTAAGAATAGCGTCTAAATCGTTTTGTGT
CCAGTAACTGAGCGATTTTACGTTTGAATAAACAATTGCTGAGAGAGACA
TAAATGTACATTGGGAGCCTGCAGTCCTACCGAAAATAACGACATTGCCT
TGGTGGGTCGATGCTTTTACTACCTTAAATATTGTAACTGGGCCTGGATT
ATGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00069859-protein

>TCONS_00069859-protein ID=TCONS_00069859-protein|Name=TCONS_00069859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
EHNPGPVTIFKVVKASTHQGNVVIFGRTAGSQCTFMSLSAIVYSNVKSLS
YWTQNDLDAILNTGNDLYSSFGYVDTFLDLRELPLQIQIENTKIEFERTV
PNVSSLSSESRNFIDIPAGYNSGIILAGSTSRAFIFYKSSYYLFDSHSRN
EEGMFGGSTGTAVLLVFQ
Run BLAST on NCBI

transcript from alignment at scaffold_51:258158..258664

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069859 ID=TCONS_00069859|Name=TCONS_00069859|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_51:258158..258664 (Clytia hemisphaerica)
AGAACATAATCCAGGCCCAGTTACAATATTTAAGGTAGTAAAAGCATCGA
CCCACCAAGGCAATGTCGTTATTTTCGGTAGGACTGCAGGCTCCCAATGT
ACATTTATGTCTCTCTCAGCAATTGTTTATTCAAACGTAAAATCGCTCAG
TTACTGGACACAAAACGATTTAGACGCTATTCTTAATACCGGTAATGATT
TGTACTCTAGTTTCGGATATGTCGATACATTTTTAGATCTCCGTGAGTTG
CCCCTTCAAATTCAgatagaaaatacaaaaatcgaGTTTGAACGAACAGT
TCCTAATGTTTCGTCTTTGTCTTCGGAAAGTCGAAATTTCATTGATATAC
CGGCTGGCTACAATAGCGGGATAATATTAGCGGGCTCAACGAGTAGGGCT
TTCATATTCTATAAATCTTCTTACTATCTATTTGATTCCCATAGTCGAAA
CGAGGAAGGTATGTTTGGTGGAAGCACAGGGACGGCGGTTTTGCTTGTAT
TCCAGAC

Coding sequence (CDS) from alignment at scaffold_51:258158..258664

>TCONS_00069859 ID=TCONS_00069859|Name=TCONS_00069859|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_51:258158..258664 (Clytia hemisphaerica)
GAACATAATCCAGGCCCAGTTACAATATTTAAGGTAGTAAAAGCATCGAC
CCACCAAGGCAATGTCGTTATTTTCGGTAGGACTGCAGGCTCCCAATGTA
CATTTATGTCTCTCTCAGCAATTGTTTATTCAAACGTAAAATCGCTCAGT
TACTGGACACAAAACGATTTAGACGCTATTCTTAATACCGGTAATGATTT
GTACTCTAGTTTCGGATATGTCGATACATTTTTAGATCTCCGTGAGTTGC
CCCTTCAAATTCAgatagaaaatacaaaaatcgaGTTTGAACGAACAGTT
CCTAATGTTTCGTCTTTGTCTTCGGAAAGTCGAAATTTCATTGATATACC
GGCTGGCTACAATAGCGGGATAATATTAGCGGGCTCAACGAGTAGGGCTT
TCATATTCTATAAATCTTCTTACTATCTATTTGATTCCCATAGTCGAAAC
GAGGAAGGTATGTTTGGTGGAAGCACAGGGACGGCGGTTTTGCTTGTATT
CCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043508XLOC_043508Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069859-proteinTCONS_00069859-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069859-exon-scaffold_51-1491911889:258158..258664TCONS_00069859-exon-scaffold_51-1491911889:258158..258664Clytia hemisphaericaexon
TCONS_00069859-exon-scaffold_51-1510915933:258158..258664TCONS_00069859-exon-scaffold_51-1510915933:258158..258664Clytia hemisphaericaexon
TCONS_00069859-exon-scaffold_51-1575043694:258158..258664TCONS_00069859-exon-scaffold_51-1575043694:258158..258664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_51supercontigscaffold_51:258158..258664 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0724254	0.74538	0	0.513368	0	0.15436	0.309531	0.75192	0.0217394	0.248534	0	0	0.22757	0	0.19124	0.20913	0.099671	0.447231	0.581743	0	0.420222	0.217504	0.276047	0	0.686419	0.193365	0	0.477588	0.359857	0.20323
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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