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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069889 ID=TCONS_00069889|Name=TCONS_00069889|organism=Clytia hemisphaerica|type=transcript|length=8237bp protein sequence of TCONS_00069889-protein >TCONS_00069889-protein ID=TCONS_00069889-protein|Name=TCONS_00069889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2656bp MVTINPKALTLGELYGQFDANTAEWTDGILSYAIRNYALQNTEKPSDKEERun BLAST on NCBI transcript from alignment at scaffold_511:224115..253133+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069889 ID=TCONS_00069889|Name=TCONS_00069889|organism=Clytia hemisphaerica|type=transcript|length=29019bp|location=Sequence derived from alignment at scaffold_511:224115..253133+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:224115..253133+ >TCONS_00069889 ID=TCONS_00069889|Name=TCONS_00069889|organism=Clytia hemisphaerica|type=CDS|length=231159bp|location=Sequence derived from alignment at scaffold_511:224115..253133+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069889 vs. Swiss-Prot (Human)
Match: DYH6 (Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=2 SV=3) HSP 1 Score: 1204.12 bits (3114), Expect = 0.000e+0 Identity = 777/2404 (32.32%), Postives = 1242/2404 (51.66%), Query Frame = 3
Query: 1104 LCKLFIFSYTWSFGGHFNCLDEEAEEIDKYCHIPSFEGLENNTIRQDFDQFARDIFDKNTDVVMPAGANLLYSYYVDFEKGSFMLWDHLVLNATLTSEADAQTKTTSLIPTPSTLCYTFXXXXXXXXXXXXXXAGHAGYGKTTIIKETLSKLNQPGGSDPARNSILGAVLHQRSIRKANDANFLFQEMSLKNKEPDERVXXXXXXXXXXXXPDRPKNALLSKLSKRGRDAYGTRHGEKVILFIDDMTMPKADEFGAQPPLEILRDQLVYSGFFHTKELHWKNIFNTTLVAAC---GGGQKDVLVKNKRLLQKFSTLCLPHPSAQALHHVYYTRMTRVIDPIDFTPEVITLRSGIISTLLGIFNQLTLKLRTIPAKSHYMFNIRDITKVVTGVLHASSTVIRTKDQFIELLIHETSRIFLDRLINEEDENIFNLVLLDQIHDFLKTKWNKDRLLTNKGTFGDFVEINVIQEKRVYQCIRDQRKLVSIIEDYYDRARVAGRDIPMNLVLFPQYCQHIVAAARVLRQTGGHLLMIGIGGTGKKSVIQLASYMQFCEFYQPTVSKNYCINDFKEDIKKVLLKAGVEGIKITFFLNDRNIVQESFMEYVCSLMSGSGFSNFFDSEGKENISVKLRSDQNIRQSSDDSMESLFELFKQRVKQNLHVVFSTSPFTEHFQERCRVYPAIINYSTVDWYNKWPAEALSIVAEKFIL-----DKSLQEAINIPRAFLDILVFTHSTANDMCKRFLNELGRHFHVTPKSXXXXXXXXXXXXXQRKAKKEFKLERLRSGLLKLEYTNENVLKMQDELISLGPILEQKTKATEDLMVEIEEDRTKVDRVRAVVKKEQEVTDFETRKVESVAYEAQKDLDXXXXXXXXXXXXXDTLNKYDIGEIRSYAKPPVMVMTVLSAVCIILSEKPDWPTAKLLLADPGFLKKLINFDYNNVDDKIYTRIKRYTKKSDFNPIAVGKISVACKSLCTWVLALEHYTAVSRMVRPKQEKCREAQQALQRALKNLASKEASLQKVEEQLQGLERRYRESVQQLEDVKNSKALTIKRLQTADLLINALTSEKDRWAESIGTLDDDTSYLITDAFLTAAGTAYIGAFPPDYRANFFKIIEAKIKDSEN--IKIRDGFQLSTSVTSQIQIQDWLNFGLPHDTHSIENALFIQTTQHWPFIIDPQRQALYWIKSMERENVLKIVDASAKNLMQVMESSIRLGASVIMQNASASLDPSLDPILKKSIVKRGNQSILTLGDSEIEYNPQFRLYILTNENNPKALPELCIKVMVVNFIVTPNGITDQILSKIVQQXXXXXXXXXXXXXXXXVQEKLYLRQLEDIALNLLHKSEGNLLDNEELIQTLDNSKTKASEIKKRVAIAEKTESELGQKRKVYLPLAVRGSLLYFIAADLASIDSMYQFSLAWFMEMFRKCLATPAAAAVEEGRRPSSARKRLHEAKEFALLSSIERRRRTLLYAVGMNDNKQFIKTMTQVITETFYRLVTFALSAGHQLLFSFYLACKISMSTNGGREGVLTMEDYNALLKQQNQTKNEDIFDKQIKVMTQYSLNNLASTLKRSTKXXXXXXXXXPFDDFLTSSQWERIEQLSDSFTIFTGLMNHV--------------KVNGNFWRDFMVSEAPYHYLDNNKEHKGLIDAENTYFKVSNLTNFHYLFLIKKLKPDYFTEAVSNYVASTIGREFVTPSVFDLKDLYAESDCRTPVMFILAPGADPSSHLLRFVKEVRGSALHLDMISLGRSQGGKAANAIRKAYKHKGSWVFLQNCHLALSFMPQLEQIVRELADPEIAVNSHFRLWLSSKPDPLLPTHILLSSFMAKVETPPDVKNNLQTSFALNGGVIDEHLFDDGTIHPHWKQLVYSACFFHAVVQGRRKFGAYGWNTAYDFITPDLEMAVSTIQEMLYQQPDVKFKALETLAGEIIYGGRVLDPWDKRCLNTLFKAFFCKELSTEGFSYLQSKNYKPPSSADNFMDCVTMIDQLPAVDEPQIFGMNENVVFAFKEREGVELLEQLSAMQSKKKFVRASSSSG---SNDELILKRVEEILNMLPNVIPISTFIPHRSRQENRTPKFNKSNSNQDLKKNXXXXXXXXXXXXXXXXXXXXXXXXXXXQQEQKRFNNXXXXXXXXXXXXHDAMKGNVLFNETLEEMAKCILQNKIPLQWLAHCYCTNKSLSSWVTDLRIRVQFISRWLECVTINDVTYSTPPRSIWLPALFYPQGILTAVLQSHARNHGIATDALTFKHYVT------ANVIQATES----SILNIFQASNHLESGISVFGLFLDGAKWDNKNRFITKCTAGTKPQSLPEIHFIPCAGENASTPYNAEEDEPTNQYLCPLYQTSKRYDSL--VCNFTNFVTSLVLPSDPDHHPDALILNGVAALCQIDE 8198
LC+ F+F Y WS GG+ EN FD F R FD N D +P +L +S ++DF+ W+ ++ T D L+PT T+ Y +L+ L +L G G GK+ I K L+K+ + G P NF Q S + +E E SKL ++ ++ G +++++F+DD+ MP+ D +G+QPP+E+LR + GF+ +L WK I + T+++AC GGG+ V R ++ FS LCLP PS +L ++ + + DF P V S I+ + I+N++++ L PAKSHY+FN+RD++K V G+L IR + Q L HE R+F DRLIN ED++ F+++L + + + + L FGDF++ + R+Y + D K ++++DY D + + LV F +H+ AR++RQ G+ L++G+GGTGK+S+ +LA+++ + Q +S+ Y + F ED++K+ AGVE + F D IV E F+E + ++++ N F+ + E + R S+ + + +F+ F +V+Q LH+V SP E F+ RCR++P+++N T+DW+ +WP EAL V++ F ++ L+E + + + V H + + M +R+ NEL R ++ TP S+L+ I L+ + +++ + +R+++GL KL TN V KM+ +L +L P+L K++ E LM ++ D+ D+VR V++++ + + +++A +AQ+DLD ALP L+AA ALD+L+K DI EIR + KPP +VMTV+ A+ I+L+ KPDWP+AK LL D FLK+L+ +D N+ +I ++++Y DF P V K+S ACKS+C WV A++ Y+ V ++V PK++K R AQ L + L K+A L++VE+Q+Q L+ Y + V + E + + ALT RL A L AL E+ RW ESI +++ S + + F+ AA AY GAF YR + +IE I+D ++ I I F L + +I+ W GLP D S EN + + + WP +IDPQ QA WI++ E ++ LKI+ + N ++++E+SIRLG V+++ +LDP+L+PIL K I G + ++ LGDS+I+Y+ FR Y+ T NP LPE+CIKV ++NF VT +G+ DQ+LS +V+ E P LE +R +L+ + +K L+ +E+ L +L SEGN+LDNEELI TL +SK + IK R+ AE TE + R+ Y P+A +GS++YF+ A L+ ID MYQ+SL +F ++F +E + + ++RL E LL++ Y V+ L H+L++SF L ++ ++G L+ ++N L+ + E R K P +L ++ W L +SF +F GL ++ +N W + + ++ KE A + + L++FH L LIK K + A++++V +G++F+ DL LY + C TP++FIL+ G+DP RF +E G + + ISLG+ QG A ++ A K G+WVFLQNCHLA+S+M +E++++ DP+ A+ FRL+LSS P P +L +S E P ++ N++ +F + F++ + W+Q+++ CFFHA++Q R+KFG GWN Y+F D E A+ ++ + ++ + + AL + GEI YGGRV D WD+RCL T+ K FF E E + Y +S Y P AD+ + I+ LP +D+P+IFGM+EN F+ +E L+ + +Q + SS+ G SNDE+ V+E+ V + T +P + E + +S +DL+ ++L+ QE RFNNLL +I TSL +L+ A+ G V+ +E +E++ L N++P W Y + K L SWV DL +R F+ WL+ P+S W+ F+PQG LT LQ+HAR + + D L+FK+ V A VI+A ++ L + E G+ V G+F+D ++WD+K I G LP +HF P S PT Y CPLY+T R +L + TNFV +++LPS D I G A LCQ+ E
Sbjct: 1989 LCQTFVFCYLWSLGGNLT---------------------EN--YYDSFDTFIRTQFDDNPDARLPNSGDL-WSIHMDFDTKRLDPWERII--PTFKYNRDVPF-FEMLVPTTDTVRYGYLMEKLLAVKHSVLFTGITGVGKSVIAKGLLNKIQESAGYVPVY------------------LNFSAQTSSARTQEIIE-----------------------SKLERKRKNILGAPGNKRIVIFVDDLNMPRLDRYGSQPPIELLRQYQDFGGFYDRNKLFWKEIQDVTIISACAPPGGGRNPV---TPRFIRHFSMLCLPMPSEHSLKQIFQAILNGFLS--DFPPAVKQTASSIVEASVEIYNKMSVDLLPTPAKSHYVFNLRDLSKCVQGILQCDPGTIREEIQIFRLFCHECQRVFHDRLINNEDKHYFHVILTEMANKHFGIAIDLEYFLNKPIIFGDFIKFGADKADRIYDDMPDIEKTANVLQDYLDDYNLTNPK-EVKLVFFQDAIEHVSRIARMIRQERGNALLVGVGGTGKQSLTRLAAHICGYKCLQIELSRGYNYDSFHEDLRKLYKMAGVEDKNMVFLFTDTQIVVEEFLEDINNILNSGEVPNLFEKDELEQVLAATRPRAKEVGISEGNRDEVFQYFISKVRQKLHIVLCMSPVGEAFRSRCRMFPSLVNCCTIDWFVQWPREALLSVSKTFFSQVDAGNEELKEKLPL------MCVNVHLSVSSMAERYYNELRRRYYTTPTSYLELINLYLSMLSEKRKQIISARDRVKNGLTKLLETNILVDKMKLDLSALEPVLLAKSEDVEALMEKLAVDQESADQVRNTVQEDEATAKVKAEETQAIADDAQRDLDEALPALDAANKALDSLDKADISEIRVFTKPPDLVMTVMEAISILLNAKPDWPSAKQLLGDSNFLKRLLEYDKENIKPQILAKLQKYINNPDFVPEKVEKVSKACKSMCMWVRAMDLYSRVVKVVEPKRQKLRAAQAELDITMATLREKQALLRQVEDQIQALQDEYDKGVNEKESLAKTMALTKARLVRAGKLTAALEDEQVRWEESIQKFEEEISNITGNVFIAAACVAYYGAFTAQYRQS---LIECWIQDCQSLEIPIDPSFSLINILGDPYEIRQWNTDGLPRDLISTENGILVTQGRRWPLMIDPQDQANRWIRNKESKSGLKIIKLTDSNFLRILENSIRLGLPVLLEELKETLDPALEPILLKQIFISGGRLLIRLGDSDIDYDKNFRFYMTTKMPNPHYLPEVCIKVTIINFTVTKSGLEDQLLSDVVRLEKPRLEEQRIKLIVRINTDKNQLKTIEEKILRMLFTSEGNILDNEELIDTLQDSKITSGAIKTRLEEAESTEQMINVAREKYRPVATQGSVMYFVIASLSEIDPMYQYSLKYFKQLFN--------TTIETSVKTENLQQRLDVLLEQTLLTA--------------------------------YVNVSRGLFEQHKLIYSFMLCVEMMR-----QQGTLSDAEWNFFLRGSAGLEKE-----------------------RPPK---------PEAPWLPTATWFACCDLEESFPVFHGLTQNILSHPISIRLGSFETYINPQKWEGYSKMKHEDKHMRQEKE------AAHQDPWSAGLSSFHKLILIKCCKEEKVVFALTDFVIENLGKQFIETPPVDLPTLYQDMSCNTPLVFILSTGSDPMGAFQRFARE-SGYSERVQSISLGQGQGPIAEKMVKDAMK-SGNWVFLQNCHLAVSWMLAMEELIKTFTDPDSAIKDTFRLFLSSMPSNTFPVTVLQNSVKVTNEPPKGLRANIRRAFT----EMTPSFFEENILGKKWRQIIFGICFFHAIIQERKKFGPLGWNICYEFNDSDRECALLNLK-LYCKEGKIPWDALIYITGEITYGGRVTDSWDQRCLRTILKRFFSPETLEEDYKYSESGIYFAP-MADSLQEFKDYIENLPLIDDPEIFGMHENANLVFQYKETSTLINTILEVQPR------SSTGGEGKSNDEI----VQEL------VASVQTRVPEKLEMEGAS----ESLFVKDLQGRLNSLTTVLG-------------------QEVDRFNNLLKLIHTSLETLNKAIAGFVVMSEEMEKVYNSFLNNQVPALWSNTAYPSLKPLGSWVKDLILRTSFVDLWLK---------RGQPKSYWISGFFFPQGFLTGTLQNHARKYNLPIDELSFKYSVIPTYRDQAAVIEAAKTVQFGQELPMDMELPSPEDGVLVHGMFMDASRWDDKEMVIEDALPGQMNPVLPVVHFEPQQNYKPS---------PT-LYHCPLYKTGARAGTLSTTGHSTNFVVTVLLPS--KRSKDYWIAKGSALLCQLSE 4158 HSP 2 Score: 174.481 bits (441), Expect = 6.450e-43 Identity = 90/231 (38.96%), Postives = 134/231 (58.01%), Query Frame = 3
Query: 204 EKSKSDVVSMVTINPKALTLGELYGQFDANTAEWTDGILSYAIRNYALQNTEKPXXXXXXXXXXXXXXXLLPTEDELKAMQGDKQFGKSLHQWIVFDGPVDTLWVENLNTVLDDTKLLCLSNGERISMLPSMKVIFEVDSLVHASPATISRCGMVFMDPQDLGWQPSVKSWLNKLRVIKIPEEQRDYLWSLFEISIEPGLQFLRDNAQHRFTDVPDLSVVQMLCNLLDAFL 896
E S V +NPK++T+GELYG+ + T EW DG+++ ++R A+ +T +ED H+WI+ DGPVD LW+EN+NTVLDD K+LCL+N ERI + P + ++FEV L ASPAT+SRCGMVF+DP++L W P VK+W+ + K+ EE ++Y+ +LF+ ++ GL F+ V D+S V LC LL++ +
Sbjct: 1779 ENSFYQAVKTYVLNPKSITMGELYGEVNNLTLEWKDGLMALSVRA-AVNDT---------------------SED---------------HKWIISDGPVDALWIENMNTVLDDNKMLCLANSERIKLTPQIHMLFEVQDLRVASPATVSRCGMVFVDPEELKWMPYVKTWMKGISK-KLTEETQEYILNLFQRYVDEGLHFINKKCSQAIPQV-DISKVTTLCCLLESLI 1970 The following BLAST results are available for this feature:
BLAST of TCONS_00069889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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