TCONS_00069905 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069905
Unique Name	TCONS_00069905
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1439

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_511:343418..348551+
coding sequence from alignment at scaffold_511:343418..348551+

transcript sequence

>TCONS_00069905 ID=TCONS_00069905|Name=TCONS_00069905|organism=Clytia hemisphaerica|type=transcript|length=1439bp
CTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGCCAGGAAGGTG
ACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTG
TATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAAC
CACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAAC
CCTGAGTTACGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAG
CGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGCTATA
GAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTGC
TGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACCCATTA
CAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCACA
GATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCC
CTGGACCACTGGACGACCCTGGACTACTTGGCACCCATGGACCACTGGAC
GACCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACT
TGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGAC
CACTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGAC
CATCAGGAGGAAGActcttaaaagaaaaagaacacaTTAATAAATCATGG
GGATGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAA
GTTGATGACACCGTTATCGTATTGTCTACagacttttgttatttttttca
tactCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttattt
tttttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAA
ACATATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTG
TAACTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACA
ATCATCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcag
actTTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgattttt
cgatttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAAT
CGTACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaa
aatcaattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGT
GGGGATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACC
GAGCCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTC
CATCATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG

Run BLAST on NCBI

protein sequence of TCONS_00069905-protein

>TCONS_00069905-protein ID=TCONS_00069905-protein|Name=TCONS_00069905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MVQSSIILHLNPLQQIVGDYLNQNQMDIPQIDRGIGQQIDPGLLGAPGPL
DDPGLLGTHGPLDDPGLLGTPGPLDDPGLLGTHGPLDDPGLLGAPGPLDD
PGLLGAHGGLQVDHQEEDS

Run BLAST on NCBI

transcript from alignment at scaffold_511:343418..348551+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069905 ID=TCONS_00069905|Name=TCONS_00069905|organism=Clytia hemisphaerica|type=transcript|length=5134bp|location=Sequence derived from alignment at scaffold_511:343418..348551+ (Clytia hemisphaerica)
CTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGCCAGGAAGGTG
ACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTG
TATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAAC
CACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAAC
CCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGTT
TGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAACC
CTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTAC
GCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATT
TTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAA
ATAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTCT
TGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATAT
TCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACA
TTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAA
TATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttctt
catttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTA
ATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTCT
TTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCAG
GACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTT
AGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAA
GACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaataatgtta
aaaacaaagcgataaaaaaataaaatttgatttggTCTGATTCGGAGACC
TCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCCTGAAGGGAG
GGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAAA
TAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTAA
GAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcata
gatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGACT
ATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGAC
AAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTGA
TATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGGC
CACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttcat
cttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACCA
AGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAAGAGAGTTTA
ATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACTTACCTCCCA
GAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAGGAAGA
AGAAGGATTTCAATACAGANccttttgttatttttttcatactCTATTTT
TTGCATCTtagattttttagttttttaatttcgcctagcgaaagtattac
gatagcctttcgcggcggcggcggcggtgtaataaaaaaattagaaaacg
aaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCAATAAAAA
TTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGTCAG
GAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTA
AAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCA
GGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAG
CTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAAT
TCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACA
TTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTA
ATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGG
CCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTG
TAGCGAAATAGTgcatagatttttttttctactttttttctaGCTAAGCC
ACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGT
ACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGA
GAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTA
TAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttt
tcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTT
AACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCT
AAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATC
CCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATG
ATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATAT
CCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaat
aatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGATTC
GGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGAACCTGATTA
TCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTCATTAGTCAT
TGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGTAATAATCTA
TTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATAC
TACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaat
caaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATCGATCC
TGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACATGGCA
CCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCATGGACCACAG
ATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACT
ACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCCTG
GACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGAC
CCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTGG
CGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaaga
aaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCCAGCCAAAGA
TGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggcccagcaactTA
AAAtctcctgggtggaaaatttttgaacaggaggctaatacagcagaatt
agaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCGAACCGAACC
ACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCCTTTTCGATA
AGCTGGGcaaattagaaaatttgaatgttttttgaTATCGTAAAGGTACG
GACATGCAAGTATATATCTccaaactttctttttgcattttaaACTAAGC
AATTTATTTATTTGCTAATGCAATAcatgatttatttttcatagGGGATG
GCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTGA
TGACACCGTTATCGTATTGTCTACagacttttgttatttttttcatactC
TATTTTTTGCATCTTAGAttttttagtttgttttgtttgttatttttttt
gttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACATA
TTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAACT
AATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCAT
CCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagactTT
GAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgatt
tgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTAC
TTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatca
attttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGGA
TTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGCC
GATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATCA
TCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG

Coding sequence (CDS) from alignment at scaffold_511:343418..348551+

>TCONS_00069905 ID=TCONS_00069905|Name=TCONS_00069905|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_511:343418..348551+ (Clytia hemisphaerica)
ATGGTACAGAGCAGTATCATACTACATCTCAACCCATTACAACAGATAGT
TGGAGATTAcctaaatcaaaatcaaatggaTATACCACAGATCGACCGTG
GTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCCCTGGACCACTG
GACGACCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACT
ACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACTTGGCACCCATG
GACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGAC
CCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGA
AGActcttaaATGGTACAGAGCAGTATCATACTACATCTCAACCCATTAC
AACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCACAG
ATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCCC
TGGACCACTGGACGACCCTGGACTACTTGGCACCCATGGACCACTGGACG
ACCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACTT
GGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACC
ACTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACC
ATCAGGAGGAAGActcttaaATGGTACAGAGCAGTATCATACTACATCTC
AACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatgga
TATACCACAGATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTAC
TAGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTGGCACCCATGGA
CCACTGGACGACCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCC
TGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCG
CCCCTGGACCACTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTA
CAAGTCGACCATCAGGAGGAAGActcttaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043532	XLOC_043532	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069905-protein	TCONS_00069905-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_511	supercontig	scaffold_511:343418..348551 +

Expression

No biomaterial libraries express this feature.

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069905 vs. Swiss-Prot (Human)

BLAST of TCONS_00069905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069905 (transcript) - C. hemisphaerica