TCONS_00069915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069915
Unique NameTCONS_00069915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069915 ID=TCONS_00069915|Name=TCONS_00069915|organism=Clytia hemisphaerica|type=transcript|length=1187bp
CCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGT
GTACGATATTCTAGCTGACAAAAAGAAAGCTATAGAGGAAGAAGGAGGAT
TTCAATACAGAAGAGAATATCCGAAAAGACGTGCTGAGAGTTTGGATGGT
ACAGAGCAGTATCATACTACATCTCAACCCATTACAACAGATAGTTGGAG
ATTAcctaaatcaaaatcaaatggaTATACCACAGATCGACCGTGGTATT
GGACAACAGATCGATCCTGGACTACTAGGCGCCCCTGGACCACTGGACGA
CCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACTTG
GCACCCATGGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCA
CTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCA
TCAGGAGGAAGActcttaaaagaaaaagaacacaTTAATAAATCATGGGG
ATGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGT
TGATGACACCGTTATCGTATTGTCTACagacttttgttatttttttcata
ctCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttattttt
tttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAAC
ATATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTA
ACTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAAT
CATCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagac
tTTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcg
atttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCG
TACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaa
tcaattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGG
GGATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGA
GCCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCA
TCATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_511:343909..348551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069915 ID=TCONS_00069915|Name=TCONS_00069915|organism=Clytia hemisphaerica|type=transcript|length=4643bp|location=Sequence derived from alignment at scaffold_511:343909..348551+ (Clytia hemisphaerica)
CCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGT
GTACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACG
GAGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAAT
TATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatt
tttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTT
TTAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTG
CTAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGA
TCCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTA
TGATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAAT
ATCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaa
ataatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGAT
TCGGAGACCTCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCC
TGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACG
CAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTT
TTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAA
TAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTCTT
GGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATT
CTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACAT
TGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAAT
ATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttcttc
atttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAA
TTTTTACCAAGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAA
GAGAGTTTAATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACT
TACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTAT
AGAGGAAGAAGAAGGATTTCAATACAGANccttttgttatttttttcata
ctCTATTTTTTGCATCTtagattttttagttttttaatttcgcctagcga
aagtattacgatagcctttcgcggcggcggcggcggtgtaataaaaaaat
tagaaaacgaaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTG
CAATAAAAATTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACA
CCCTGTCAGGAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGC
AGCACTGTAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGA
TAGTTATCAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTC
TCTTGGCAGCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATG
AATGATAATTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATT
TAAAAGACATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCT
GCATTTTTAATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGT
GGGGTGTGGCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGAT
AATAATTTGTAGCGAAATAGTgcatagatttttttttctactttttttct
aGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACA
AATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAA
TACAACGGAGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGT
CGAAAATTATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTag
aaaaatttttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTA
CTCTTTTTTAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGA
CGGACTGCTAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGA
AGATTGATCCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACAC
ACCTTTATGATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGA
AGAGAATATCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaat
tgcaaaaataatgttaaaaacaaagcgataaaaaaataaaatttgatttg
gTCTGATTCGGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGA
ACCTGATTATCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTC
ATTAGTCATTGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGT
AATAATCTATTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCA
GTATCATACTACATCTCAACCCATTACAACAGATAGTTGGAGATTAccta
aatcaaaatcaaatggaTATACCACAGATCGACCGTGGTATTGGACAACA
GATCGATCCTGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGAC
TACATGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCAT
GGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGA
CCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATG
GCGCCCCTGGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCA
CTGGACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGG
ACTACTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGAct
cttaaaagaaaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCC
AGCCAAAGATGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggccc
agcaactTAAAAtctcctgggtggaaaatttttgaacaggaggctaatac
agcagaattagaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCG
AACCGAACCACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCC
TTTTCGATAAGCTGGGcaaattagaaaatttgaatgttttttgaTATCGT
AAAGGTACGGACATGCAAGTATATATCTccaaactttctttttgcatttt
aaACTAAGCAATTTATTTATTTGCTAATGCAATAcatgatttatttttca
tagGGGATGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAA
TGAAGTTGATGACACCGTTATCGTATTGTCTACagacttttgttattttt
ttcatactCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgtt
attttttttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATG
TAAAACATATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGAC
CGTGTAACTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGC
TACAATCATCCGCCGAAATATATCAcaaattttgggtattttaacgtttt
tcagactTTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgat
ttttcgatttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTC
CAATCGTACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaata
ccaaaatcaattttttgactatggtcagagccgtTAAGTGTAAGATATTA
CGGTGGGGATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGC
AACCGAGCCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACC
TCTCCATCATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043532XLOC_043532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069915-exon-scaffold_511-1491911889:343909..343987TCONS_00069915-exon-scaffold_511-1491911889:343909..343987Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1510915933:343909..343987TCONS_00069915-exon-scaffold_511-1510915933:343909..343987Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1575043694:343909..343987TCONS_00069915-exon-scaffold_511-1575043694:343909..343987Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1491911889:344320..344370TCONS_00069915-exon-scaffold_511-1491911889:344320..344370Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1510915933:344320..344370TCONS_00069915-exon-scaffold_511-1510915933:344320..344370Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1575043694:344320..344370TCONS_00069915-exon-scaffold_511-1575043694:344320..344370Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1491911889:346981..347161TCONS_00069915-exon-scaffold_511-1491911889:346981..347161Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1510915933:346981..347161TCONS_00069915-exon-scaffold_511-1510915933:346981..347161Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1575043694:346981..347161TCONS_00069915-exon-scaffold_511-1575043694:346981..347161Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1491911889:347270..347305TCONS_00069915-exon-scaffold_511-1491911889:347270..347305Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1510915933:347270..347305TCONS_00069915-exon-scaffold_511-1510915933:347270..347305Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1575043694:347270..347305TCONS_00069915-exon-scaffold_511-1575043694:347270..347305Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1491911889:347342..347491TCONS_00069915-exon-scaffold_511-1491911889:347342..347491Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1510915933:347342..347491TCONS_00069915-exon-scaffold_511-1510915933:347342..347491Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1575043694:347342..347491TCONS_00069915-exon-scaffold_511-1575043694:347342..347491Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1491911889:347862..348551TCONS_00069915-exon-scaffold_511-1491911889:347862..348551Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1510915933:347862..348551TCONS_00069915-exon-scaffold_511-1510915933:347862..348551Clytia hemisphaericaexon
TCONS_00069915-exon-scaffold_511-1575043694:347862..348551TCONS_00069915-exon-scaffold_511-1575043694:347862..348551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:343909..348551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0353746	0.205367	0	0.04892	0	0.139915	0.0436622	0	0	0	0	0.12063	0.05011	0.0617958	0.154738	0	0	0.038562	0	0	0	0	0	0	0	0.0497413	0.0530853	0.0805266	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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