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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069919 ID=TCONS_00069919|Name=TCONS_00069919|organism=Clytia hemisphaerica|type=transcript|length=2055bpRun BLAST on NCBI protein sequence of TCONS_00069919-protein >TCONS_00069919-protein ID=TCONS_00069919-protein|Name=TCONS_00069919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp MVVSVNMSSGNDDVPVKWCFSQVKGTSEEEITEADIISTVEFNHNGDLLARun BLAST on NCBI transcript from alignment at scaffold_511:383881..401274+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069919 ID=TCONS_00069919|Name=TCONS_00069919|organism=Clytia hemisphaerica|type=transcript|length=17394bp|location=Sequence derived from alignment at scaffold_511:383881..401274+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:383881..401274+ >TCONS_00069919 ID=TCONS_00069919|Name=TCONS_00069919|organism=Clytia hemisphaerica|type=CDS|length=10896bp|location=Sequence derived from alignment at scaffold_511:383881..401274+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069919 vs. Swiss-Prot (Human)
Match: 2ABD (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1) HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0 Identity = 314/437 (71.85%), Postives = 380/437 (86.96%), Query Frame = 1
Query: 427 KWCFSQVKGTSEEEITEADIISTVEFNHNGDLLATGDKGGRIVIFQKDNAPKTSPR-YGEYNVYSTFQSHEPEFDYLKSLDIDEKINQIKWLRRRNQAHFLLSTNDKTVKLWKISERNLRIDGPLNTKSHDGTLDLEPHEINNLVIPQLHKTPLMVEASPRKIYSNAHTYHVNSISVNSDDETYLSADDLRINLWSLQRTDQSFNIVDIKPANMEELTEVITAAEFHPHHCNILVYSSSKGTVRLCDMRDNALCDRYAKLFEEPEDPCNRSFFSELISSIADVKFSHNGRYMLTRDYLSVKVWDLHMENKPIETYHCHEYLRSKLSVLYENDCIFDKYECCWSGDDSSILTGSYNNFFRIFNRENKSGLCLEATRENARPKHPLKQKKVTTTGKRKKEEISVECLDFNRKILHIAWHPQENIIALAATNNLYMFQEK 1734
+WCFSQVKG +E++ EADIISTVEFN++GDLLATGDKGGR+VIFQ++ K+ P GEYNVYSTFQSHEPEFDYLKSL+I+EKIN+I+WL ++N AHFLLSTNDKT+KLWKISER+ R +G N K DG L +P I L +P L LMVEASPR+I++NAHTYH+NSISVNSD ETYLSADDLRINLW L+ TD+SFNIVDIKPANMEELTEVITAAEFHPH CN+ VYSSSKGT+RLCDMR +ALCDR++K FEEPEDP +RSFFSE+ISSI+DVKFSH+GRYM+TRDYLSVKVWDL+ME++P+ET+ HEYLRSKL LYENDCIFDK+ECCW+G DS+I+TGSYNNFFR+F+R+ + + LEA+RE+++P+ LK +KV T GKR+K+EISV+ LDFN+KILH AWHP +N+IA+AATNNLY+FQ+K
Sbjct: 17 QWCFSQVKGAIDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISERDKRAEG-YNLKDEDGRL-RDPFRITALRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRDTRRDVTLEASRESSKPRASLKPRKVCTGGKRRKDEISVDSLDFNKKILHTAWHPVDNVIAVAATNNLYIFQDK 451 The following BLAST results are available for this feature:
BLAST of TCONS_00069919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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