|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069920 ID=TCONS_00069920|Name=TCONS_00069920|organism=Clytia hemisphaerica|type=transcript|length=8166bp protein sequence of TCONS_00069920-protein >TCONS_00069920-protein ID=TCONS_00069920-protein|Name=TCONS_00069920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2232bp MESFNIFLHSLSFVSPLKFETYHSLNECLFCFIRLKNRYVMSGIPRFTGSRun BLAST on NCBI transcript from alignment at scaffold_511:412313..439121+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069920 ID=TCONS_00069920|Name=TCONS_00069920|organism=Clytia hemisphaerica|type=transcript|length=26809bp|location=Sequence derived from alignment at scaffold_511:412313..439121+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:412313..439121+ >TCONS_00069920 ID=TCONS_00069920|Name=TCONS_00069920|organism=Clytia hemisphaerica|type=CDS|length=187572bp|location=Sequence derived from alignment at scaffold_511:412313..439121+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069920 vs. Swiss-Prot (Human)
Match: ASCC3 (Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3) HSP 1 Score: 2423.28 bits (6279), Expect = 0.000e+0 Identity = 1225/2144 (57.14%), Postives = 1554/2144 (72.48%), Query Frame = 3
Query: 1440 LRDLKKHATKLLGQDTSQEAGDEAAAFLFEAFKDTQKITSVESTKLRQTFGPYSASLATKAFETVQDFVSLLDENFIKG-DDLNNGKNTKKSYYGQKLKVTVDFEN-KNFDELFAGYSDSNEQNLQGDNFVELFKDKLNVHGKGEIXXXXXXXXXXXXXXXXXXXWLATQCE-----NHIAQQKDSALNVADLTSAVFEILNTTKTNDEIQNXXXXXXXXXXXXXILKILEHRNDIITAAIQHGYDDNNSDYQYIDPTRKQ-----NKPLPGQQVTIQSAHEKNLLKKMAKEERKLMRRDPELYNEL-------------FQVNREQEEI-IRNQPIFKK---ATSSTHQYPYVFDEFAQKKLSSAFIGGTKILLPESAQKNSYQKYEEVDIPATGTKPPGYLNTLVDTNSLDEVGQLVFQGIKKLNRIQSIVYEAAYNSNENLLVSAPTGAGKTNIALMTITHEIRNNIKDGVVKKDAFKIVYVAPMKALAAEMTANFGRKLQPLGILVRELTGDMQLTKKEILETQMLITTPEKWDVVTRKGASDIALAQLVKLLIIDEVHLLHDDRGAVLEALVARTLRQVESSQSMIRIVGLSATLPNYLDVARFLNVNPQKGLFYFDGRFRPVPLQQTFMGVRATGYLNQNRDMEQICYDKALENIQHGHQVMIFVHARNATVKTAMALREIAKQQGDTLEFQCEQDNFKYGNMIKRVAKSRNKQLRELFPDGFGIHHAGMLRADRTLVEQLFAEGFVKVLVCTATLAWGVNLPAHAVIIKGTQIYDSKKGAFVDIGILDVMQIFGRAGRPQFDKWGHGMILTTHDKLAHYLQLLTSQTPIESQFVNRLTDNLNAEIALGTVTNVDEAVKWLSYTYLYVRMRMNPIVYGINYADKGEDPTLQKHRYDLICSCARKLDKARMIRFDERTNYLYPTNLGRTASNFYIDFATIEIVNESFKPFIHQPEIFYVVSRANEFQQIKVREDELPELEQHLSDSCVTDVKGGAENEYGKVNILLQAYISKAAVESFSLISDMSYVAQNAARIVRALFEIALQKSWAVMAKRMLILSKVVDKQIWEWEHPFRQCEGLKFDILNKLESKKLTIDRLREYEAGEIGHMLNHPKIGAKVRSYAFQFPQVKIGANIQPITRNVLRVQLEIMPDFKWNDRMHGTTSEPWWIWVEDPDNNNIYHSDYILLTKKAVQSKQAQKLVFTIPIFDPLPPQYYVRVISDRWLHAEAVCAISFKHLILPDHHAPHTELLNLNPLPVACLRDTKLEMLYKFSHFNPIQTQIFHTLYYSDANVLLGAPTGSGKTIAAEIAIFRVFREHKGGKVVYIAPLKALVRERIIDWKERFEKHLGKKVVELTGDVTPDMRAVVAADVIVTTPEKWDGVSRSWQTRKYVKDVALLVIDEIHLLGADRGPILEVIVSRTNFISSSTTKTVRIVGLSTALANARDLASWLGIGQEGLFNFRPSVRPVPLEVHIAGFPGKHYCPRMKTMNKPCYKGIKTHSPDKPVLIFVSSRRQTRMTALDLVAYSAGDSNPKQWLHMPEDEMENLLSQVRDQNLKLVLSFGIGLHHAGLHERDRKICEELFVNQKIQILVATATLAWGVNFPAHLVVVKGTEYYDGKSKRYVDFPITDVLQMMGRAGRPQFDDSGVALILVHDVKKHFYKKFLYEPFPVESSLLGVLPDHLNAEIVAGTISSKQEAMDYLTWTYLFRRLIMNPTYYDLDSTENEDVNVFLSNLVENAINELEESYCVDVMEDERSLEASVLGRISSYYYLSHLTLRVFRHVLHEENSIEDLLQCLSDVEEYEELPVRHNEDQMNADLAKLVPIEVDKYTYDSPHTKTHLLLQAYFTRANLPCADYGTDTKSVLDQAIRIMQAMIDFCADQGWXXXXXXXXXXXXXXXXGRWYHDHSLLQLPNVTEENLNEFKN-RSKMRSVSSSG---VLSLPEMIEIARNCPRHVHSMLDRALGRQNVDKIYDVLSRLPFTSLRMSIIGDWEDEVGKVKKTPQEIDLNEQTHFNR---KWTRAFPDTEYSLKVCFSRKQISNKVHDGK----AYSPKFPKPQDEGWMFVIGDSDGNELHALKRVGVFHKDSTNVSLVFYTPEKAGRKIYTLYVMSDSYLGLDQQYELYLDIVEPTASSQ 7751
L+D+ A +++G D +EA + AAFLF F + E+ ++Q FGP+ +S AT A +S ++ + + ++ + ++G+ L + D + +FDEL + ++ + D +K LN H + + + +P S W CE N ++ V DL ++++L + K+ DE+Q++LF+LLG + +LI K+L++R I+ + N+ +Q + K+ KP G QVTIQS EK L+K+ +EE+++ RR+ + +L ++ REQ + R+ PI + A YP+V+D A+ +SAFI G K++LPE Q+ + + YEEV IP + P + V LDE+GQL F+G+K+LNRIQSIV+E AYN+NEN+L+ APTGAGKTNIA++T+ HEIR + + GV+KK+ FKIVYVAPMKALAAEMT F R+L+PLGI+V+ELTGDMQL+K EIL TQML+TTPEKWDVVTRK D+AL+Q+V+LLI+DEVHLLH+DRG VLE++VARTLRQVES+QSMIRI+GLSATLPNYLDVA FL+VNP GLF+FDGRFRPVPL QTF+G++ + Q +M+++CY+ L+ ++ GHQVM+FVHARNATV+TAM+L E AK G + F Y K+V +SRNKQ+RELFPDGF IHHAGMLR DR LVE LF+ G +KVLVCTATLAWGVNLPAHAVIIKGTQIY +K+G+FVD+GILDVMQIFGRAGRPQFDK+G G+I+TTHDKL+HYL LLT + PIESQF+ L DNLNAEIALGTVTNV+EAVKW+SYTYLYVRMR NP+ YGI++ DPTL+KHR L+ RKLDKA+MIRF+ERT Y T+LGRTAS++YI + TIE NE F + +IF +VS+A EF QIKVRE+E+ EL+ LS+ C GG EN YGK+NILLQ YIS+ ++SFSLISD +YVAQNAARIVRALFEIAL+K W M R+L LSKV+DK++W W P RQ L IL +LE KKLT+D+L++ EIGH+L+H IG KV+ Q P V + A+IQPITR VLRV L I DF WND++HGT EPWWIWVEDP N++IYHS+Y L KK V SK+AQ LVFTIPIF+PLP QYY+R +SDRWL AEAVC I+F+HLILP+ H PHTELL+L PLP+ L E LY FSHFNP+QTQIFHTLY++D NVLLGAPTGSGKT+AAE+AIFRVF ++ K VYIAPLKALVRER+ DWK R E+ LGKKV+ELTGDVTPDM+++ AD+IVTTPEKWDGVSRSWQ R YV+ V +L+IDEIHLLG +RGP+LEVIVSRTNFISS T K VRIVGLSTALANARDLA WL I Q GLFNFRPSVRPVPLEVHI GFPG+HYCPRM +MNKP ++ I++HSP KPVLIFVSSRRQTR+TAL+L+A+ A + +PKQWL+M E EMEN+++ VRD NLKL L+FGIG+HHAGLHERDRK EELFVN K+Q+L+AT+TLAWGVNFPAHLV++KGTEYYDGK++RYVDFPITDVLQMMGRAGRPQFDD G A+ILVHD+KK FYKKFLYEPFPVESSLLGVL DHLNAEI GTI+SKQ+A+DY+TWTY FRRLIMNP+YY+L ++ VN FLS+L+E ++ ELE SYC+++ ED RS+E GRI+SYYYL H T+++F+ L E S E+LL LSD EEY +LPVRHNED MN++LAK +PIE + +++DSPHTK HLLLQA+ +RA LPC DY TDTK+VLDQA+R+ QAM+D A+QGWL +VL I L+QMVIQGRW D SLL LPN+ +L+ FK + M+ + G + SLPE+I SM++ L + ++ LS LP ++ +S+ G W+D V + E+ ++ T R KW + D EY L+V R H GK A +P+FPK +DEGW ++G+ D EL ALKRVG + ++ SL FYTPE GR IYTLY MSD YLGLDQQY++YL++ + + S+Q
Sbjct: 70 LKDILHAAKQIVGTDNGREAIESGAAFLFMTFHLKDSVGHKETKAIKQMFGPFPSSSATAACNATNRIISHFSQDDLTALVQMTEKEHGDRVFFGKNLAFSFDMHDLDHFDEL--PINGETQKTISLD-----YKKFLNEH----LQEACTPELKPVEKTNGSFLW----CEVEKYLNSTLKEMTEVPRVEDLCCTLYDMLASIKSGDELQDELFELLGPEGLELIEKLLQNRITIVDRFLN---SSNDHRFQALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGLMCFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSAFIAGAKMILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGH-IPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLV----EGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFG--FHKGKPESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVG-YIRNHHVASLSFYTPEIPGRYIYTLYFMSDCYLGLDQQYDIYLNVTQASLSAQ 2187 The following BLAST results are available for this feature:
BLAST of TCONS_00069920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.