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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069935 ID=TCONS_00069935|Name=TCONS_00069935|organism=Clytia hemisphaerica|type=transcript|length=3018bp
TACCAGGTGAAACATCTACACCTTCTTCTTTTTGCTTTCGTTTCTGTTCG
TGCTGTTCTTTCATTTCGACAGCTTCACGATAAATCGAATGATGATCACC
AAGCCGTTGCAAAGATATCTCTTCTACTTCAGTCAAGTGATCCATtgctt
cttcaatctttttcataCCAAACAAGCAGTGTGCCAAATTGATTCTGATG
GAGAGAATAATTGGATGTTCTTTATCCAACACCTGTAAGCCATCTTCAAG
TGTTTGTGATAAAGTATCATGGGCTTTATTGGAAAGTCCTTTTTCTGCCA
AACAACGCCCGATAACGCTTGTCGTTTGTAAAACTTCCGGATGGGATTTG
TCGAatgtttcgatctgttttgttTGAGTTGATTCAAGAATTTTCAATGC
ATCATTAAAACGTCCTTTCATTGTCAGAACATGACCGATGTGGAAATCGT
TTCTCAAGTATCGATCGTGATGGTCACCAAAAACTTCTGACAATATCGGT
TTGGATGATTCGAAAATTTGTAACGCTTCGTCGAATGCTTTCATTCTCTT
CAAACATTCTCCGATATAGATTTTGCCAATCAAGTAATCCCTGTGTCTCT
ggcctattgttttattatcaattatttCGATTTCTTTGAAGATACTTAAT
GCGTCCTCGAAATGAGACAGATTCATTAGACATTGTCCGATTTTGTGCTT
TGTGGTGAGGTAATCGTTGTCCTTTCGAACGGTTTCGATTTCTTTAAATA
TACGTAATGCTTCATGGTAGTGGGATAAATTCTCTAAACATTGTCCAATG
GCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTT
TTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAG
ATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGG
TTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAA
TATACGTAATGCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAA
TGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCC
TTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATG
AGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACA
AGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTccatcattttt
ttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATG
AATCAAATCATTCTGTACATCAATCAATTTCataagaaagatattttcaa
catctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatcc
atttttttttcttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATT
TGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGA
GAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCAT
GTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAA
TATCTTATTTAGAACAAATACATCATCAACAAATTTGATCAGTAATCCTT
TCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTA
ACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGT
AGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgtt
ctttttgtcttttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCA
TTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCT
GAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTA
CATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAAT
TGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGA
GGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGA
CCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAATACTTTACGG
GGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGA
GATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAA
TGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAG
CTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAACATTACGATA
GGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCC
CACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACT
GCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAAC
TGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCA
CTTTAGAACCAGCAATCCATATATTACATATGTCATCAAATTCAGCCTTG
GATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATT
GAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGA
TTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAA
AAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGG
AAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTT
TATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGA
TCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAA
TTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAG
TATGTGACTGTGTACTCA Run BLAST on NCBI transcript from alignment at scaffold_511:592913..597190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069935 ID=TCONS_00069935|Name=TCONS_00069935|organism=Clytia hemisphaerica|type=transcript|length=4278bp|location=Sequence derived from alignment at scaffold_511:592913..597190+ (Clytia hemisphaerica)
TACCAGGTGAAACATCTACACCTTCTTCTTTTTGCTTTCGTTTCTGTTCG
TGCTGTTCTTTCATTTCGACAGCTTCACGATAAATCGAATGATGATCACC
AAGCCGTTGCAAAGATATCTCTTCTACTTCAGTCAAGTGATCCATtgctt
cttcaatctttttcataCCAAACAAGCAGTGTGCCAAATTGATTCTGATG
GAGAGAATAATTGGATGTTCTTTATCCAACACCTGTAAGCCATCTTCAAG
TGTTTGTGATAAAGTATCATGGGCTTTATTGGAAAGTCCTTTTTCTGCCA
AACAACGCCCGATAACGCTTGTCGTTTGTAAAACTTCCGGATGGGATTTG
TCGAatgtttcgatctgttttgttTGAGTTGATTCAAGAATTTTCAATGC
ATCATTAAAACGTCCTTTCATTGTCAGAACATGACCGATGTGGAAATCGT
TTCTCAAGTATCGATCGTGATGGTCACCAAAAACTTCTGACAATATCGGT
TTGGATGATTCGAAAATTTGTAACGCTTCGTCGAATGCTTTCATTCTCTT
CAAACATTCTCCGATATAGATTTTGCCAATCAAGTAATCCCTGTGTCTCT
ggcctattgttttattatcaattatttCGATTTCTTTGAAGATACTTAAT
GCGTCCTCGAAATGAGACAGATTCATTAGACATTGTCCGATTTTGTGCTT
TGTGGTGAGGTAATCGTTGTCCTTTCGAACGGTTTCGATTTCTTTAAATA
TACGTAATGCTTCATGGTAGTGGGATAAATTCTCTAAACATTGTCCAATG
GCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTT
TTGAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAG
ATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAACGG
TTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAA
TATACGTAATGCCTCATGGTAGTGAGATAAATTCATTAAACAGTTTCCAA
TGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCAAGAGTGTCC
TTTTGAACGCTTTCGGTTTCTTTAAATATACGTAATGCGTCATGGTAGTG
AGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGAGAGGTAAC
TGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTA
AATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACAGTTTCC
AATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGAGTGT
CCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTcttgattt
tgagataaattctCTAAACATTGTCCAATGGCATGCTTCGTGATGAGGTA
ACTGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTT
CAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATTGT
CCGATCTCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGT
GTCCTTTTTAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGT
AATGAGATAAATTCTTTAAACATTGTCCAATGGCATGCTTCGTGGAGAGG
TAATGGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTC
TTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATGAAACAGT
GTCCAATGGCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATG
ATAATGAGATAAATTCTCTAAACATTGTCCGATCTCATGCTTCGTGGAGA
GGTAATGGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATT
TCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTTTAAACA
GTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCGCCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCA
TGATAATGAGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGGA
GAGGTAATGGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGA
TTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATTAAA
CAGTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGT
CATGGTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTT
TTAAAATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTc
catcatttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTT
CAAAAAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaag
atattttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTA
TTTGCCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAA
TAAAGGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACG
TAAGTTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTC
TAGAAAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCA
ATAAAGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATC
AGTAATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAG
AAGATCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCA
AAGACAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCT
GAAAGAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAAC
AGTTAGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGG
GTAGATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTG
CGTGCGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTT
GCTAGAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCAC
CGCATTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGA
ATCAAATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAA
TACTTTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAA
CAAGATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAG
ATCTGATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGAT
GTTGACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAA
CATTACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTG
CCCCCAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTG
ACGGTAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGT
GGTTGGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATC
AGTTTTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAA
TTCAGCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTA
GTATGGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATC
CTATTCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCT
AGTTACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTC
CAGAAGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTT
CTCCTCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATAC
TTTTGCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCT
GGTTGTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGG
TCCTCGTCAGTATGTGACTGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069935-exon-scaffold_511-1491911889:592913..593701 | TCONS_00069935-exon-scaffold_511-1491911889:592913..593701 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1510915933:592913..593701 | TCONS_00069935-exon-scaffold_511-1510915933:592913..593701 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1575043694:592913..593701 | TCONS_00069935-exon-scaffold_511-1575043694:592913..593701 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1491911889:594584..594611 | TCONS_00069935-exon-scaffold_511-1491911889:594584..594611 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1510915933:594584..594611 | TCONS_00069935-exon-scaffold_511-1510915933:594584..594611 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1575043694:594584..594611 | TCONS_00069935-exon-scaffold_511-1575043694:594584..594611 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1491911889:594990..597190 | TCONS_00069935-exon-scaffold_511-1491911889:594990..597190 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1510915933:594990..597190 | TCONS_00069935-exon-scaffold_511-1510915933:594990..597190 | Clytia hemisphaerica | exon |
| TCONS_00069935-exon-scaffold_511-1575043694:594990..597190 | TCONS_00069935-exon-scaffold_511-1575043694:594990..597190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:592913..597190 + |
Blast
The following BLAST results are available for this feature:
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