TCONS_00069945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069945
Unique NameTCONS_00069945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069945 ID=TCONS_00069945|Name=TCONS_00069945|organism=Clytia hemisphaerica|type=transcript|length=2824bp
TTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAA
TATACGTAATGCCTCATGGTAGTGAGATAAATTCATTAAACAGTTTCCAA
TGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCAAGAGTGTCC
TTTTGAACGCTTTCGGTTTCTTTAAATATACGTAATGCGTCATGGTAGTG
AGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGAGAGGTAAC
TGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTA
AATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACAGTTTCC
AATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGAGTGT
CCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTcttgattt
tgagataaattctCTAAACATTGTCCAATGGCATGCTTCGTGATGAGGTA
ACTGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTT
CAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATTGT
CCGATCTCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGT
GTCCTTTTTAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGT
AATGAGATAAATTCTTTAAACATTGTCCAATGGCATGCTTCGTGGAGAGG
TAATGGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTC
TTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATGAAACAGT
GTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATG
GTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTTTTAA
AATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTccatc
atttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAA
AAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaagatat
tttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTG
CCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAATAAA
GGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACGTAAG
TTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGA
AAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAA
AGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATCAGTA
ATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGA
TCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCAAAGA
CAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAA
GAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAACAGTT
AGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAG
ATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTG
CGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTA
GAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCACCGCA
TTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCA
AATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAATACT
TTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAACAAG
ATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAGATCT
GATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTG
ACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAACATT
ACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCC
CAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGG
TAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTT
GGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTT
TTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAATTCA
GCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTAT
GGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATCCTAT
TCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTT
ACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGA
AGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTTCTCC
TCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATACTTTT
GCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTT
GTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCT
CGTCAGTATGTGACTGTGTACTCA
Run BLAST on NCBI

transcript from alignment at scaffold_511:593863..597190+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069945 ID=TCONS_00069945|Name=TCONS_00069945|organism=Clytia hemisphaerica|type=transcript|length=3328bp|location=Sequence derived from alignment at scaffold_511:593863..597190+ (Clytia hemisphaerica)
TTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAA
TATACGTAATGCCTCATGGTAGTGAGATAAATTCATTAAACAGTTTCCAA
TGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCAAGAGTGTCC
TTTTGAACGCTTTCGGTTTCTTTAAATATACGTAATGCGTCATGGTAGTG
AGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGAGAGGTAAC
TGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTA
AATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACAGTTTCC
AATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGAGTGT
CCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTcttgattt
tgagataaattctCTAAACATTGTCCAATGGCATGCTTCGTGATGAGGTA
ACTGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTT
CAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATTGT
CCGATCTCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGT
GTCCTTTTTAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGT
AATGAGATAAATTCTTTAAACATTGTCCAATGGCATGCTTCGTGGAGAGG
TAATGGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTC
TTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATGAAACAGT
GTCCAATGGCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATG
ATAATGAGATAAATTCTCTAAACATTGTCCGATCTCATGCTTCGTGGAGA
GGTAATGGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATT
TCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTTTAAACA
GTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCGCCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCA
TGATAATGAGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGGA
GAGGTAATGGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGA
TTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATTAAA
CAGTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGT
CATGGTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTT
TTAAAATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTc
catcatttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTT
CAAAAAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaag
atattttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTA
TTTGCCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAA
TAAAGGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACG
TAAGTTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTC
TAGAAAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCA
ATAAAGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATC
AGTAATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAG
AAGATCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCA
AAGACAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCT
GAAAGAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAAC
AGTTAGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGG
GTAGATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTG
CGTGCGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTT
GCTAGAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCAC
CGCATTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGA
ATCAAATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAA
TACTTTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAA
CAAGATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAG
ATCTGATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGAT
GTTGACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAA
CATTACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTG
CCCCCAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTG
ACGGTAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGT
GGTTGGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATC
AGTTTTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAA
TTCAGCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTA
GTATGGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATC
CTATTCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCT
AGTTACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTC
CAGAAGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTT
CTCCTCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATAC
TTTTGCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCT
GGTTGTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGG
TCCTCGTCAGTATGTGACTGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043539XLOC_043539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069945-exon-scaffold_511-1491911889:593863..594737TCONS_00069945-exon-scaffold_511-1491911889:593863..594737Clytia hemisphaericaexon
TCONS_00069945-exon-scaffold_511-1510915933:593863..594737TCONS_00069945-exon-scaffold_511-1510915933:593863..594737Clytia hemisphaericaexon
TCONS_00069945-exon-scaffold_511-1575043694:593863..594737TCONS_00069945-exon-scaffold_511-1575043694:593863..594737Clytia hemisphaericaexon
TCONS_00069945-exon-scaffold_511-1491911889:595242..597190TCONS_00069945-exon-scaffold_511-1491911889:595242..597190Clytia hemisphaericaexon
TCONS_00069945-exon-scaffold_511-1510915933:595242..597190TCONS_00069945-exon-scaffold_511-1510915933:595242..597190Clytia hemisphaericaexon
TCONS_00069945-exon-scaffold_511-1575043694:595242..597190TCONS_00069945-exon-scaffold_511-1575043694:595242..597190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:593863..597190 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000232746	0.0102496	0.0298871	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.57036e-10	0.919637	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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