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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069949 ID=TCONS_00069949|Name=TCONS_00069949|organism=Clytia hemisphaerica|type=transcript|length=2835bpRun BLAST on NCBI protein sequence of TCONS_00069949-protein >TCONS_00069949-protein ID=TCONS_00069949-protein|Name=TCONS_00069949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp MASRQECMNDLIKTARGNKFSSLRKLASNEQEVYNIWDTISQLVEKSMEQRun BLAST on NCBI transcript from alignment at scaffold_511:67997..78047- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069949 ID=TCONS_00069949|Name=TCONS_00069949|organism=Clytia hemisphaerica|type=transcript|length=10051bp|location=Sequence derived from alignment at scaffold_511:67997..78047- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:67997..78047- >TCONS_00069949 ID=TCONS_00069949|Name=TCONS_00069949|organism=Clytia hemisphaerica|type=CDS|length=32985bp|location=Sequence derived from alignment at scaffold_511:67997..78047- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069949 vs. Swiss-Prot (Human)
Match: CCD81 (Coiled-coil domain-containing protein 81 OS=Homo sapiens GN=CCDC81 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 5.986e-41 Identity = 76/166 (45.78%), Postives = 105/166 (63.25%), Query Frame = 2
Query: 299 NEQEVYNIWDTISQLVEKSMEQRKAVHIPGLGVFTFTSSKLDVGHNKYILIQRPVFILSEKLAKTHRLTQSKYHVPGEIPVIQLNFAALAIEINVSRDLVEASVKEVVNALSRAIDKMGACEISFSTIGNLVISNGAAKMKFLPVFLEKMDNTGHLSKFLTQRPET 796
+++EV IW +S+ V + + K V IP G FTF KL+VG+NK+ILIQRPVFI+ EKL + H L Q+K + PGEIP++ LNF +++E +RD+VE VKE + LSR+I E +F IG L+I + KM+F FL MD +G L+K L RP T
Sbjct: 24 SQEEVSIIWGNVSEFVRRQLTLHKGVQIPAFGTFTFIRQKLEVGNNKFILIQRPVFIMVEKLVQIHGLKQNKVYTPGEIPIVPLNFVMISLEGPFNRDVVEGCVKETLLFLSRSISMKQNVEFTFKGIGVLMIRDSKVKMRFYKDFLCTMDGSGALAKALANRPGT 189 HSP 2 Score: 146.362 bits (368), Expect = 2.888e-36 Identity = 113/371 (30.46%), Postives = 199/371 (53.64%), Query Frame = 2
Query: 1304 DFCYLCYQRERRNVPIYYTXXXXXXXXXDDHLLQMYTLLKDKEAFKREEESNNKKRDEAQDIARFNMSASETQKKKYEPSNEFQRSFVFRSRPITPP-HYIKQEDYQTDLARQVSDKRCSTNKSMKDKXXXXXXXXXXXXXXXXIQREHYWKSKRLQSDQYRKALDTQVYIKKCLDERYEESLGPNRRTFSLPRPNVLLPFKGGRVQMSFKTSELPASYPDSEGPVFGVYDLDFDKLKERRKGAQNLYQNQMTMASEKRNQEMMRNVRLRREEENMLKRTKLDLLQETLMRNQANLKQRQDLEKTWARQAIKKRGREIDDK-LRDYSAGMLLQEQCDKYKRCGQCTRHTGNYGQSNVWSETRYVSGSRLMV 2410
+ CY+C QR +RN +YY+EER++E E++ L+Q Y +LKD+EA R + + R++ Q A +N+ +E + EF +SF+F RP++P + +KQE+Y L +Q+ +++ + K + ++ ++RLEQ++L E+LA QR + K K ++ Y++ALD Q+ K S LP PDS P+FG + + + E++K QN ++Q+ A+ + + ++ + +R + ML+RT+ + L + + + Q L++ W R A K+ R+++DK S + L +QC+KY+RC QC R T N G+SN+W +++ GSRL+V
Sbjct: 324 EMCYVCLQRAQRNSLLYYSEERRREIEDE-RLIQQYQMLKDQEALFRHQMKSLATREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPALNALKQEEYSRSLLKQMDNRQENEIKQRQYRELMDRLEQVQLTEELAAQRAKFLKDKMEETQCYKRALDAQI---------------------------------------KNKPSRLPPFEPDSSEPIFGKNEGEL--MVEKQKREQNYMKHQLEAAANHKRKAILHQLVDQRRDLQMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFERASDKLFLLDQCEKYRRCKQCQRRTSNVGESNLWPLNKFLPGSRLLV 652 The following BLAST results are available for this feature:
BLAST of TCONS_00069949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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