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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069952 ID=TCONS_00069952|Name=TCONS_00069952|organism=Clytia hemisphaerica|type=transcript|length=1071bp
ATCAATCGCTGTAAAATAAGctaaaataacattttggaGAGGAAAAAGCT
TAGTTGACCCTAACCATGAATCAAAAGcgcatttttattacatttctgTG
GTTAAATTGGTTGAAAAAAGTTCACATGTTGGAGTGTTATGAATGTTTTG
CTGACGTCGGCAGTTCTTGTGATCCTACAAAAACAAGAGATTGTTCTGCT
AATGAAATTTGCTTGACAATGTCATATAAAGAATCTTATGAAGGGAAAGT
CCTGAACAGTTTTGTCAAAGGTTGCGCCAGTGGATGGGATAGCTGCGAAT
CAAATTGTGATGATGATTCAATATTCGACTGTAAGgAATCATGCTGTAGA
GGAAATTTATGTAACGAAGAAAGCGATGAAAAAGCGCTCTGGTACGCGCT
CTCATCGAAGAAAACTTATAATAGTGGAAATGCTGTGAAGAGTAACAAGT
GCTTGATGGCGGTTTTAGGTGTTATGCTATTTGTACTCAAAATTGGTTTC
CTTTGAGAAGTGAATGGACTGTAACTGAAGTAGAAATTACAAGCATCTGT
CGTGTAAGTTTATCTAAGGATGACGAATGACTTGGAATACTCGTGAATGG
AAAATAGAACAATTCATTAcgttgaatttttttataattttcttcatcga
aaaaaaaatattatctgaattttaaaatcttgtaAAATAACTTAAATTTG
TTTTAAGCTATCCCAAAAGAATAACTATTAtaagcaaaataaacaaaaaa
gtcacaaaatgcACTAAAAATATAAGGACTTCAGTCACCAATTGACAAAC
CAAAACGAGTGAAGACTTCAAGAAACGAGTATGTCTAGAAGATCTTCCAG
TCATATTATTTCGATTTGTATTATTAAAAGAGTTGGGCTCAAATCAGTTA
ATCATCACCATGGTACTTAAGTAGAGAAAATTATAGCCAGGCAATAACAC
CTTTAGGATGGACAAAATATCCCAACTGAACAATccaaaaacgaaaaaat
tggtaaaaatatctaaaaaaaaatccTTAACAAGAAGCCCAAATCCGATT
Aaggattttaaaattcaaaat Run BLAST on NCBI protein sequence of TCONS_00069952-protein >TCONS_00069952-protein ID=TCONS_00069952-protein|Name=TCONS_00069952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MNQKRIFITFLWLNWLKKVHMLECYECFADVGSSCDPTKTRDCSANEICL
TMSYKESYEGKVLNSFVKGCASGWDSCESNCDDDSIFDCKESCCRGNLCN
EESDEKALWYALSSKKTYNSGNAVKSNKCLMAVLGVMLFVLKIGFL Run BLAST on NCBI transcript from alignment at scaffold_511:97878..99456- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069952 ID=TCONS_00069952|Name=TCONS_00069952|organism=Clytia hemisphaerica|type=transcript|length=1579bp|location=Sequence derived from alignment at scaffold_511:97878..99456- (Clytia hemisphaerica)
ATCAATCGCTGTAAAATAAGCTAAAATAACATTTTGGAGAGGAAAAAGCT
TAGTTGACCCTAACCATGAATCAAAAGCGCATTTTTATTACATTTCTGTG
GTTAAATTGGTTGAAAAAAGGTAAAGCCATTCATGCTTCGCAGAAGTGCC
AGGGTAATGAGGTAACAAGTTCGATAAAAAAGTACAACTTTAAGACATAA
GAAAGATAGACACCGTCGAAAATGATATACTGTTCCTGAATGAGTTATTA
TGGTGAGAAGGTCTATGTTTTGGCAGATAGTCAAAATGTCTCCTCGCAAT
TTAATTTTTTTAAAGAAATTCTATTGAAAACATTAATGTACCTTCTTTCA
GTTCACATGTTGGAGTGTTATGAATGTTTTGCTGACGTCGGCAGTTCTTG
TGATCCTACAAAAACAAGAGATTGTTCTGCTAATGAAATTTGCTTGACAA
TGTCATATAAAGAATCTTATGAAGGGAAAGTCCTGAACAGTTTTGTCAAA
GGTTGCGCCAGTGGATGGGATAGCTGCGAATCAAATTGTGATGATGATTC
AATATTCGACTGTAAGGTAGGTTAAAAATTGTTTTTCTAACCATAATAAC
TACATTATAGACTTAAAGCATGAGTTAAACACCATATAATATATTACCTG
GACGTAAATTGGACATATCTACCATATAATACTTCAGCATCTTGAGCATT
TTGTCTGTTAACTGGAAGAGTCATTTATATGCCAAAAAACCAATCAGCTT
TTTGTGTTTTATACTAAAATCTACAAAATATAGAAAAAATAAGAAAAAAT
ATTAGAACAGCAACCTTTACATTTCTTCTTTTTCTGTTTTTAGGAATCAT
GCTGTAGAGGAAATTTATGTAACGAAGAAAGCGATGAAAAAGCGCTCTGG
TACGCGCTCTCATCGAAGAAAACTTATAATAGTGGAAATGCTGTGAAGAG
TAACAAGTGCTTGATGGCGGTTTTAGGTGTTATGCTATTTGTACTCAAAA
TTGGTTTCCTTTGAGAAGTGAATGGACTGTAACTGAAGTAGAAATTACAA
GCATCTGTCGTGTAAGTTTATCTAAGGATGACGAATGACTTGGAATACTC
GTGAATGGAAAATAGAACAATTCATTACGTTGAATTTTTTTATAATTTTC
TTCATCGAAAAAAAAATATTATCTGAATTTTAAAATCTTGTAAAATAACT
TAAATTTGTTTTAAGCTATCCCAAAAGAATAACTATTATAAGCAAAATAA
ACAAAAAAGTCACAAAATGCACTAAAAATATAAGGACTTCAGTCACCAAT
TGACAAACCAAAACGAGTGAAGACTTCAAGAAACGAGTATGTCTAGAAGA
TCTTCCAGTCATATTATTTCGATTTGTATTATTAAAAGAGTTGGGCTCAA
ATCAGTTAATCATCACCATGGTACTTAAGTAGAGAAAATTATAGCCAGGC
AATAACACCTTTAGGATGGACAAAATATCCCAACTGAACAATCCAAAAAC
GAAAAAATTGGTAAAAATATCTAAAAAAAAATCCTTAACAAGAAGCCCAA
ATCCGATTAAGGATTTTAAAATTCAAAAT Coding sequence (CDS) from alignment at scaffold_511:97878..99456- >TCONS_00069952 ID=TCONS_00069952|Name=TCONS_00069952|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_511:97878..99456- (Clytia hemisphaerica)
GAATCATGCTGTAGAGGAAATTTATGTAACGAAGAAAGCGATGAAAAAGC
GCTCTGGTACGCGCTCTCATCGAAGAAAACTTATAATAGTGGAAATGCTG
TGAAGAGTAACAAGTGCTTGATGGCGGTTTTAGGTGTTATGCTATTTGTA
CTCAAAATTGGTTTCCTTTGATTCACATGTTGGAGTGTTATGAATGTTTT
GCTGACGTCGGCAGTTCTTGTGATCCTACAAAAACAAGAGATTGTTCTGC
TAATGAAATTTGCTTGACAATGTCATATAAAGAATCTTATGAAGGGAAAG
TCCTGAACAGTTTTGTCAAAGGTTGCGCCAGTGGATGGGATAGCTGCGAA
TCAAATTGTGATGATGATTCAATATTCGACTGTAAGATGAATCAAAAGCG
CATTTTTATTACATTTCTGTGGTTAAATTGGTTGAAAAAAGGAATCATGC
TGTAGAGGAAATTTATGTAACGAAGAAAGCGATGAAAAAGCGCTCTGGTA
CGCGCTCTCATCGAAGAAAACTTATAATAGTGGAAATGCTGTGAAGAGTA
ACAAGTGCTTGATGGCGGTTTTAGGTGTTATGCTATTTGTACTCAAAATT
GGTTTCCTTTGATTCACATGTTGGAGTGTTATGAATGTTTTGCTGACGTC
GGCAGTTCTTGTGATCCTACAAAAACAAGAGATTGTTCTGCTAATGAAAT
TTGCTTGACAATGTCATATAAAGAATCTTATGAAGGGAAAGTCCTGAACA
GTTTTGTCAAAGGTTGCGCCAGTGGATGGGATAGCTGCGAATCAAATTGT
GATGATGATTCAATATTCGACTGTAAGATGAATCAAAAGCGCATTTTTAT
TACATTTCTGTGGTTAAATTGGTTGAAAAAAGGAATCATGCTGTAGAGGA
AATTTATGTAACGAAGAAAGCGATGAAAAAGCGCTCTGGTACGCGCTCTC
ATCGAAGAAAACTTATAATAGTGGAAATGCTGTGAAGAGTAACAAGTGCT
TGATGGCGGTTTTAGGTGTTATGCTATTTGTACTCAAAATTGGTTTCCTT
TGATTCACATGTTGGAGTGTTATGAATGTTTTGCTGACGTCGGCAGTTCT
TGTGATCCTACAAAAACAAGAGATTGTTCTGCTAATGAAATTTGCTTGAC
AATGTCATATAAAGAATCTTATGAAGGGAAAGTCCTGAACAGTTTTGTCA
AAGGTTGCGCCAGTGGATGGGATAGCTGCGAATCAAATTGTGATGATGAT
TCAATATTCGACTGTAAGATGAATCAAAAGCGCATTTTTATTACATTTCT
GTGGTTAAATTGGTTGAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069952-exon-scaffold_511-1575043694:99337..99456 | TCONS_00069952-exon-scaffold_511-1575043694:99337..99456 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1575043694:98891..99105 | TCONS_00069952-exon-scaffold_511-1575043694:98891..99105 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1575043694:97878..98613 | TCONS_00069952-exon-scaffold_511-1575043694:97878..98613 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1510915933:99337..99456 | TCONS_00069952-exon-scaffold_511-1510915933:99337..99456 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1510915933:98891..99105 | TCONS_00069952-exon-scaffold_511-1510915933:98891..99105 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1510915933:97878..98613 | TCONS_00069952-exon-scaffold_511-1510915933:97878..98613 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1491911889:99337..99456 | TCONS_00069952-exon-scaffold_511-1491911889:99337..99456 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1491911889:98891..99105 | TCONS_00069952-exon-scaffold_511-1491911889:98891..99105 | Clytia hemisphaerica | exon |
| TCONS_00069952-exon-scaffold_511-1491911889:97878..98613 | TCONS_00069952-exon-scaffold_511-1491911889:97878..98613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:97878..99456 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016054 | LY6_UPA_recep-like |
Blast
The following BLAST results are available for this feature:
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