TCONS_00069958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069958
Unique NameTCONS_00069958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069958 ID=TCONS_00069958|Name=TCONS_00069958|organism=Clytia hemisphaerica|type=transcript|length=1832bp
ATTTTGAAAATAGCCATATATATGATATCTCGCCAACTTTCAGATCATAT
ACATCCTGGCTGATGAACCATTGGGAACTGTTGTGAAAAGGATGAAAATG
TCCAGGTTACATATTCTTTTGGTCTTATTGTCCTGTGCTGTCTTTTGCAA
AGCAGAAGAGCATGAAATCAAGGCAGGATCAATCATTAAGCATGTACCAA
CATTGGGGAATTCATACTCCATTGATGTCGATATCAAGTTAACAGGAATC
AGCACaagattttccaatattttgtCAGCTACTTTTAATAATCGTACCAG
AAAAAGTCCTCAAGCTCCTTCAATATATGTGAGAAAGAACTCCACAGATA
TCATGCTCTTCAACTCATTGAACAACAAACATATGTATCTTGTCAACAAA
TCACTACCTTTGAATGAGTACGTCAACATAAAAATCCGTCAAGCCAAAAT
GTTTGATGGTACTTATCATTACATGGTGATTATTGATGGACAAAAGATCT
TTTCAGCCATCAATTCGAACCCAGTCTCTTTTGAAAACGTTACTTATTAT
GCTTCAAAACCACGAGTGACTCAGGCTAATGCAATgatcagaaatttcaa
aattcactcACCGATTCCTGATACATatttcaagGCACACAAAGGCCAAT
TGGTGCGCTTCATTCGTCGTTTGCAACCATCATACAAGTTCACTTTCACC
ATCAATCCTTTGGGATATGTCGCTGGCGAATCTAACATTCTTCGTGTGAC
CAATACAGAACAAGATTGTTGTAACCATGGCGATAGAATCCCTGGTCTTT
TCTTCGCCCCAAACTCCACAAATCTGTTAATCAGAAATGCAATCAATGGT
AACGGTAATCAACTGGTCAACAAAACTATCCCATTACATTATACAACCTA
TGTCACTATTTTACAACGGCAATACGGACAAGAGCGTTACCGGTATTCAA
TTTCCGTCAATGCTACGGAAATTTATCGAGCAATCAATAATCGATTTGTT
CCTTATGATAATGTGACGGTCTGGATGAGTGACAAGTTCCACACAGCTGC
TAATGTGATTGTCGATCGTTTTGAATATCAAACTCCAATACCAGAATATG
GTTTCCAATATCAACCAGCCATGAACACTTTCCATGACGAAATCCCTTAC
ATCAGTAAAGCATACAAATTCGAATTCCAAGTCAAACTGAATGGTACAAG
CCCATTTATGACCAACATTCTACAAGTAACATCACGGCCTCTGCAAAATT
ACCGCGCAACTGTCACTTCCGTGGAAGTCCAACCCAATTCAGCATCATTG
AAGATTCGACACAGGGTAGGGCTGTACAAAAAGAATCGATCATTTTCCCT
ACATATCGGAACTAATCGATTCATGCGAGTTCGAATCATGCAGTACCTCG
ATTGCAACAACAAATATCGATTCTTCATATATTTCAATAATGTGGAGGTT
TTCTCCCTCACAAACACACGTCCGAGAGAGTTCTTCAATTCAGTGGTATT
CTTTGGAGCACCTCGAAAACGAGCGGCCATAAACAGCATTATTCGGAATT
ACTCATTTGTAAACCTCTGAGCATAAATTAGTCATGTGTTTCAAGATTTC
TGAAGACAACGTTTCAATGGAAAGTTATATTATTTCGAATAAATATCTAC
ATGAAATCTGAACTGTTCtaaatgtcaaaataaattaaatataaCATAAG
CATTGGTAAAATCCAAAATGGCTGTTCATTCGTTCGattcatttttgaaa
acgtGATCCATTCGATTCTGAATAGTGTCAACAATTTCCCATAATGCAAC
ATTCCGATTGTGTAAGTTTTGCAATTTCTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_511:167399..171385-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069958 ID=TCONS_00069958|Name=TCONS_00069958|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at scaffold_511:167399..171385- (Clytia hemisphaerica)
ATTTTGAAAATAGCCATATATATGATATCTCGCCAACTTTCAGATCATAT
ACATCCTGGCTGATGAACCATTGGGAACTGTTGTGAAAAGGTAAGTTAAA
TTCTAGAATCAAAGAATTAAAAGGATTGGGTTGTACAGCGTGTCCACTTC
ACTACTTGTACAATCTTCTTTGGCCATCGAAGCTACAAAGTACTGAGTGT
ATACTGTTTCATTTATTTTAGGATGAAAATGTCCAGGTTACATATTCTTT
TGGTCTTATTGTCCTGTGCTGTCTTTTGCAAAGCAGAAGAGCATGAAATC
AAGGCAGGATCAATCATTAAGCATGTACCAACATTGGGGAATTCATACTC
CATTGATGTCGATATCAAGTTAACAGGAATCAGCACAAGATTTTCCAATA
TTTTGTCAGCTACTTTTAATAATCGTACCAGAAAAAGTCCTCAAGCTCCT
TCAATATATGTGAGAAAGAACTCCACAGATATCATGCTCTTCAACTCATT
GAACAACAAACATATGTATCTTGTCAACAAATCACTACCTTTGAATGAGT
ACGTCAACATAAAAATCCGTCAAGCCAAAATGTTTGATGGTACTTATCAT
TACATGGTGATTATTGATGGACAAAAGATCTTTTCAGCCATCAATTCGAA
CCCAGTCTCTTTTGAAAACGTTACTTATTATGCTTCAAAACCACGAGTGA
CTCAGGCTAATGCAATGATCAGAAATTTCAAAATTCACTCACCGATTCCT
GATACATGTAAGAAAGTTTTTCTTATCCCAACCCACTTTTTTGAGAAATA
CTTGTTTTAAACCANCTGATGAACCATTGGGAACTGTTGTGAAAAGGTAA
GTTAAATTCTAGAATCAAAGAATTAAAAGGATTGGGTTGTACAGCGTGTC
CACTTCACTACTTGTACAATCTTCTTTGGCCATCGAAGCTACAAAGTACT
GAGTGTATACTGTTTCATTTATTTTAGGATGAAAATGTCCAGGTTACATA
TTCTTTTGGTCTTATTGTCCTGTGCTGTCTTTTGCAAAGCAGAAGAGCAT
GAAATCAAGGCAGGATCAATCATTAAGCATGTACCAACATTGGGGAATTC
ATACTCCATTGATGTCGATATCAAGTTAACAGGAATCAGCACAAGATTTT
CCAATATTTTGTCAGCTACTTTTAATAATCGTACCAGAAAAAGTCCTCAA
GCTCCTTCAATATATGTGAGAAAGAACTCCACAGATATCATGCTCTTCAA
CTCATTGAACAACAAACATATGTATCTTGTCAACAAATCACTACCTTTGA
ATGAGTACGTCAACATAAAAATCCGTCAAGCCAAAATGTTTGATGGTACT
TATCATTACATGGTGATTATTGATGGACAAAAGATCTTTTCAGCCATCAA
TTCGAACCCAGTCTCTTTTGAAAACGTTACTTATTATGCTTCAAAACCAC
GAGTGACTCAGGCTAATGCAATGATCAGAAATTTCAAAATTCACTCACCG
ATTCCTGATACATGTAAGAAAGTTTTTCTTATCCCAACCCACTTTTTTGA
GAAATACTTGTTTTAAACCATGGGTTTTTTATTATCATGTCATTTTATCC
ATATGACCATGTGCATGTTAGTTTTAACTTACAGGAGTACCAAATTTGAG
TAAAATGTAAAATAACGAGATTTTGGGGATGGAACTTTTGCAAATTGGGG
GAGCAAAATAGAACTCTAATCTAAAACATTTTTATCAACATACATTTTTA
AGATTTCAAGGCACACAAAGGCCAATTGGTGCGCTTCATTCGTCGTTTGC
AACCATCATACAAGTTCACTTTCACCATCAATCCTTTGGGATATGTCGCT
GGCGAATCTAACATTCTTCGTGTGACCAATACAGAACAAGATTGTTGTAA
CCATGGCGATAGAATCCCTGGTCTTTTCTTCGCCCCAAACTCCACAAATC
TGTTAATCAGAAATGCAATCAATGGTAACGGTAATCAACTGGTCAACAAA
ACTATCCCATTACATTATACAACCTATGTCACTATTTTACAACGGCAATA
CGGACAAGAGCGTTACCGGTATTCAATTTCCGTCAATGCTACGGAAATTT
ATCGAGCAATCAATAATCGATTTGTTCCTTATGATAATGTGACGGTCTGG
ATGAGTGACAAGTTCCACACAGCTGCTAATGTGATTGTCGATCGTTTTGA
ATATCAAACTCCAATACCAGAATATGGTAAGATAATCAATCAATAATAAT
TTATTTTATCAAAATTTGTATGAGAGCTTAGTTTGATTGAAAAGCTCATT
TTTCAGGAAGTCTCAAGCCTTTTTTCAGACAAAGTAGCCAAAGGGGATTC
ATACTAACGAGGAAACCGAATTTCCCTGTTTATTTCAGGTAGTTCACCTT
TAGTTAATTAAGATATTCTATTTCTTTTCAAAACAAACTTTTCTCTCGTA
TTAGATGATTTTTCTTCGAATTCACAATTTTGGAATACGATAATCTTTTA
ATGTTTAGGTTTCCAATATCAACCAGCCATGAACACTTTCCATGACGAAA
TCCCTTACATCAGTAAAGCATACAAATTCGAATTCCAAGTCAAACTGAAT
GGTACAAGCCCATTTATGACCAACATTCTACAAGTAACATCACGGCCTCT
GCAAAATTACCGCGCAACTGTCACTTCCGTGGAAGTCCAACCCAATTCAG
CATCATTGAAGATTCGACACAGGGTAGGGCTGTACAAAAAGAATCGATCA
TTTTCCCTACATATCGGAACTAATCGATTCATGCGAGTTCGAATCATGCA
GTACCTCGATTGCAACAACAAATATCGATTCTTCATATATTTCAATAATG
TGGAGGTTTTCTCCCTCACAAACACACGTCCGAGAGAGTTCTTCAATTCA
GTGGTATTCTTTGGAGCACCTCGAAAACGAGCGGCCATAAACAGCATTAT
TCGGAATTACTCATTTGTAAACCTCTGAGCATAAATTAGTCATGTGTAAG
TATATATTGTTGTTTCTTAATAGACACCTCAAAAATAACCGAAAATTTCA
AAGAATTATCTTAAATCCACCTTTGATTCTTGAATAGGATGATCAACTAA
ATTAAAAGCTAATAAACTGATTTATTTTTGTCAGAAGGGCGGGAGTCAAA
GAGCAGGCGTTTGTGTTTGTTAGCAAAATAGCCGTGTTAGAGAGTGATAG
ATTAATCAAGGCAACGGACTTCCTTTTGCATTTATTTACGCTCACTACCG
AATTTTTCGACAGAATAATTGAAAAGCGAGATAAAGTTACTGTGCGAAGA
AATCAACTTTGCTTCTTGAACGCTTGATTATTCGTTCTAAAAGCAAAACG
GACAGTTTACGCGGGTAATTCTATCCTACCTTCCTGTGGCCTCCCCTCCC
GCCTCCCTGACAATGTTGCTGAGTCATCCTCGAATTCAACACTGTAGAGG
GGGGAAGAGGGGAGGGTGGAATTGTCATGGAAAATTAGAGCAATTCCATT
ACTTTTGGCCACTTTTGTAGGTGGGACCACATAATTTCATCCACGTTCAA
CAGCGACGCTGGAAAGAGCAAAGAACTTAAAAATTCCCAAAGAATTTCCG
ACCCTTTGATTTGATCTCCACTAGCTGAAATATATGCCGTTTCACTGAGA
TAAGGGTCTTTCCGATTTTGAAAATATTGAAAACATTTGTCTTAAAATTC
TACTTGAAATAATCTTTTTCAAAACATTGTTTCTCGTTTTAGGTTTCAAG
ATTTCTGAAGACAACGTTTCAATGGAAAGTTATATTATTTCGAATAAATA
TCTACATGAAATCTGAACTGTTCTAAATGTCAAAATAAATTAAATATAAC
ATAAGCATTGGTAAAATCCAAAATGGCTGTTCATTCGTTCGATTCATTTT
TGAAAACGTGATCCATTCGATTCTGAATAGTGTCAACAATTTCCCATAAT
GCAACATTCCGATTGTGTAAGTTTTGCAATTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043545XLOC_043545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069958-exon-scaffold_511-1575043694:171296..171385TCONS_00069958-exon-scaffold_511-1575043694:171296..171385Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1575043694:169873..170408TCONS_00069958-exon-scaffold_511-1575043694:169873..170408Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1575043694:169160..169633TCONS_00069958-exon-scaffold_511-1575043694:169160..169633Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1575043694:168391..168877TCONS_00069958-exon-scaffold_511-1575043694:168391..168877Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1575043694:167399..167643TCONS_00069958-exon-scaffold_511-1575043694:167399..167643Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1510915933:171296..171385TCONS_00069958-exon-scaffold_511-1510915933:171296..171385Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1510915933:169873..170408TCONS_00069958-exon-scaffold_511-1510915933:169873..170408Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1510915933:169160..169633TCONS_00069958-exon-scaffold_511-1510915933:169160..169633Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1510915933:168391..168877TCONS_00069958-exon-scaffold_511-1510915933:168391..168877Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1510915933:167399..167643TCONS_00069958-exon-scaffold_511-1510915933:167399..167643Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1491911889:171296..171385TCONS_00069958-exon-scaffold_511-1491911889:171296..171385Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1491911889:169873..170408TCONS_00069958-exon-scaffold_511-1491911889:169873..170408Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1491911889:169160..169633TCONS_00069958-exon-scaffold_511-1491911889:169160..169633Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1491911889:168391..168877TCONS_00069958-exon-scaffold_511-1491911889:168391..168877Clytia hemisphaericaexon
TCONS_00069958-exon-scaffold_511-1491911889:167399..167643TCONS_00069958-exon-scaffold_511-1491911889:167399..167643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:167399..171385 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.311653	0.245573	0.112415	0	0	0.0813313	0.221465	0	0.977067	1.02099	0	0.900797	0	0	6.2856	4.6042	0.285849	0.418282	5.08476	9.86194	30.0543	36.0856	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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