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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069986 ID=TCONS_00069986|Name=TCONS_00069986|organism=Clytia hemisphaerica|type=transcript|length=2890bp
ATTCTATGGCTGCATAGTATTTACTTACTATCGACGGCAGATTGTCTCCA
TAGTAACAGTAGATATAGCACAATCCTTGGGTTAGTGACTTTGACTAATT
GTCCACCGGACGAGCAATTTCGTTGTGTGGATGCATGGAAGAATGCAAAT
AATCTCTCGCAAGATGTCAAACTGCACAACAGAACTTGTTTCATTGACGT
GCAAAACTCACCCGAATATCTACATGAGATTGTATTATCTTATTCTGAAG
ACACAGAATCAAACTTTACAGAACAATGCCTGAACAAGAAAGCAAAGATG
ATATTTCGTAAAGACGAGATGAGTATACTGTTCACGTATATGTCATATGA
ATTGACCAGGCTAGCTAGTTATCTTTTGGTGAACGAAAAGGTTATTCTGC
TGGCAGTAACTTTTCAACCAATGTTGCCTTCCCAACTCCGCGAAAGGTCT
TACAACCTTTTTAGCCATGAATCAAGTtttgtttcagagaatcaaaaagA
TTCTGTCTTCCGGGTAGCAATGGATATGGGTGTGACTTATTTCGGAATAG
TGTATGCGAAAGAATATCAAGAGGATGAAAACCTCATTACGAAGGCTTGT
AAAGAGCGTCCTACAGATTCAGCATTTTGTGTGGCAATGCGGTTAGACCA
AGAGGAAAAGAGTAACAAATGTTTCAAAGAAATCCTCATGGATTACCAAA
ATCTAACTAGTGTTAACAACGTTTTACAGATTCTAGAAGAAGATCCACAT
ATGAGAATCTTGGTTGCTTACGGCTACGGAAGTTCCCATCAAAGACTGTT
CAAAATTGATCTGTTTAACGATTTCATGTTCCCAGATAATATAGATCGTA
AAAAGTACTACTTTCTTGTTCCATTCACTAGGAACTTTACAAATTCAAGC
AGCCATTACAAAAATGTTCACAATTTCGAGCGATTTCAAAACGTCCCTGG
TGGTCTGGTGATGGATAAGTTTGTCACAAACACTCtacaattcaaagaaa
attttgtggATTCCAATTCTGCTTTTATCTATCTGGTGCGGTATATGCCA
AAAGAATATCTATTCCTTATCAAAATGGTCATCCCCAATTACGATTCAAG
CGTCGGAATCACGTGGGAAGTTTGGAATGACGTGCCGATGGTTAAACGTG
AAAAACTGGCAAACATCTTCTTGAGTAGCGATAAAATTATGAATGACCTA
TTAGCAACATGGAAAAGATTAcataattttaaagaaaatacagCAGATGA
TTATATGACTAGAAATGAATTCAATCCTTCAGTTGCTATACAGAGGTCAA
ACCCTTATTGCAATTTGACACGACCAAAGACATGCCAGAAAGGCTACGAA
TTGAGACACGGGTTATACCACGAGGCAAAATGGCAGAACAGCTACGGTTG
GCATTGTGGGGCGTGCGCAGAAAAACAGTACAAAGAAGACGAGGGCATGT
CCAAATGTAAAACATGTAATTATCCTTTTACGACAAATGAAGCCAAAACT
AAATGTTTTGATCCGTATAATCGAGACTATATGAAACTCCATGACCCAGT
CATGATAGTGATAACGATATTGTCGGCAATGACTGGTCTTCTTATTATGT
TCACTAGTATCGTATTCATCAAACTACGAGATACGCCTATCGTTAAAGCC
GCTAATCGTTCCATGACCGTGGTCCAACTTTTCGGTCATCTTTTGTTAGC
AACTGTAACTCCAATCTTATTTCTTGAGGAGCCTACACCTTGGAAATGCT
TCTTAAAACCAATAGTGACGGGTCTATGTTTTACTTCCACAGTTTCAGTC
AACTTAGCAAAGACACAGAAATTACACGTCATATTTAATTCGAAGATGGT
TCattcaaaaaagaaacaaaaagccATTGCAATCTTAGAATGGTTAATCG
TAGGAATGACTATATTAATCGATTTAGCTATTCTGGCCTCAACTTTTCAG
AATGGAAGGCCGGTACCAGAAACTCATCGAAATTTCGCAACTCAAACGAG
GGAGATATCGTGTACAAACAATAATCATATCATTATACAAATAGTGTACA
TCTTAGTGCTGGTTTTAGCCAATGGTATTCAAGCAGTGCGAGCGCGTAAT
CTACCATCACATTTCAAGGAGACAACGCATGTTATTTATTCATCTTTCAC
ATCAGTACTACTACTGGGAGCGTTATCCGCCATTTACTTCACACAAAAAA
GCGCGAAAACACGAGATGTTATCATGTGGGCTTCGATACTCACTatgaat
tttcttcatttttctttgatttatgCGTACAAATTGTACGTGGTGCTGTT
GAAGCCGAACAAAAATACGAAGAAAGCCTTTCAAGAGAAACGGAAGAAGA
ACTTTGATGAGAAAATGCATAGAGTGAAAGATATACCGGCTCTCACTCGA
ATAAAGATACCTACTCGAAAGTGAATCCGGAGAAGGATTTTCTAAGATAC
AGAATAAACTTGTTAGAACACAACGGAGGAGTGCTTGGATGAAATATGCC
AGTGTCAGCATCTtgacaaatgtaaacaaataaatcagacacattacgta
atgtttgcATATGTAcgaatttcattatttttacctGATGCATGCAAAAA
CCAGAAAGAAAGAGGTTCAAATTACTTTCCTTGTTTGAACGAACAATTTT
GCTTGAAGCCATCTTAATGGATTTCCGTATCAGTTTTCTATTTGCATGCA
GACTTTTTTAATTGGTTATCCTTAATCAAGAAAATGTTGACCGAATTATT
ATGATGCAAAAACTTAAACCAAACTTTTAACTCTTGTAACCAATCTTAAA
AATGTAGGTAGAAACAGATTCTTTTTCAAGAAGTGATACCGAAATAAATT
CTCTAGATCTACTGTAATTCTCGATTACAGTAGATCTGAA Run BLAST on NCBI protein sequence of TCONS_00069986-protein >TCONS_00069986-protein ID=TCONS_00069986-protein|Name=TCONS_00069986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=807bp
ILWLHSIYLLSTADCLHSNSRYSTILGLVTLTNCPPDEQFRCVDAWKNAN
NLSQDVKLHNRTCFIDVQNSPEYLHEIVLSYSEDTESNFTEQCLNKKAKM
IFRKDEMSILFTYMSYELTRLASYLLVNEKVILLAVTFQPMLPSQLRERS
YNLFSHESSFVSENQKDSVFRVAMDMGVTYFGIVYAKEYQEDENLITKAC
KERPTDSAFCVAMRLDQEEKSNKCFKEILMDYQNLTSVNNVLQILEEDPH
MRILVAYGYGSSHQRLFKIDLFNDFMFPDNIDRKKYYFLVPFTRNFTNSS
SHYKNVHNFERFQNVPGGLVMDKFVTNTLQFKENFVDSNSAFIYLVRYMP
KEYLFLIKMVIPNYDSSVGITWEVWNDVPMVKREKLANIFLSSDKIMNDL
LATWKRLHNFKENTADDYMTRNEFNPSVAIQRSNPYCNLTRPKTCQKGYE
LRHGLYHEAKWQNSYGWHCGACAEKQYKEDEGMSKCKTCNYPFTTNEAKT
KCFDPYNRDYMKLHDPVMIVITILSAMTGLLIMFTSIVFIKLRDTPIVKA
ANRSMTVVQLFGHLLLATVTPILFLEEPTPWKCFLKPIVTGLCFTSTVSV
NLAKTQKLHVIFNSKMVHSKKKQKAIAILEWLIVGMTILIDLAILASTFQ
NGRPVPETHRNFATQTREISCTNNNHIIIQIVYILVLVLANGIQAVRARN
LPSHFKETTHVIYSSFTSVLLLGALSAIYFTQKSAKTRDVIMWASILTMN
FLHFSLIYAYKLYVVLLKPNKNTKKAFQEKRKKNFDEKMHRVKDIPALTR
IKIPTRK Run BLAST on NCBI transcript from alignment at scaffold_511:204432..207321 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069986 ID=TCONS_00069986|Name=TCONS_00069986|organism=Clytia hemisphaerica|type=transcript|length=2890bp|location=Sequence derived from alignment at scaffold_511:204432..207321 (Clytia hemisphaerica)
TTCAGATCTACTGTAATCGAGAATTACAGTAGATCTAGAGAATTTATTTC
GGTATCACTTCTTGAAAAAGAATCTGTTTCTACCTACATTTTTAAGATTG
GTTACAAGAGTTAAAAGTTTGGTTTAAGTTTTTGCATCATAATAATTCGG
TCAACATTTTCTTGATTAAGGATAACCAATTAAAAAAGTCTGCATGCAAA
TAGAAAACTGATACGGAAATCCATTAAGATGGCTTCAAGCAAAATTGTTC
GTTCAAACAAGGAAAGTAATTTGAACCTCTTTCTTTCTGGTTTTTGCATG
CATCaggtaaaaataatgaaattcgTACATATgcaaacattacgtaatgt
gtctgatttatttgtttacatttgtcaAGATGCTGACACTGGCATATTTC
ATCCAAGCACTCCTCCGTTGTGTTCTAACAAGTTTATTCTGTATCTTAGA
AAATCCTTCTCCGGATTCACTTTCGAGTAGGTATCTTTATTCGAGTGAGA
GCCGGTATATCTTTCACTCTATGCATTTTCTCATCAAAGTTCTTCTTCCG
TTTCTCTTGAAAGGCTTTCTTCGTATTTTTGTTCGGCTTCAACAGCACCA
CGTACAATTTGTACGcataaatcaaagaaaaatgaagaaaattcatAGTG
AGTATCGAAGCCCACATGATAACATCTCGTGTTTTCGCGCTTTTTTGTGT
GAAGTAAATGGCGGATAACGCTCCCAGTAGTAGTACTGATGTGAAAGATG
AATAAATAACATGCGTTGTCTCCTTGAAATGTGATGGTAGATTACGCGCT
CGCACTGCTTGAATACCATTGGCTAAAACCAGCACTAAGATGTACACTAT
TTGTATAATGATATGATTATTGTTTGTACACGATATCTCCCTCGTTTGAG
TTGCGAAATTTCGATGAGTTTCTGGTACCGGCCTTCCATTCTGAAAAGTT
GAGGCCAGAATAGCTAAATCGATTAATATAGTCATTCCTACGATTAACCA
TTCTAAGATTGCAATggctttttgtttcttttttgaatGAACCATCTTCG
AATTAAATATGACGTGTAATTTCTGTGTCTTTGCTAAGTTGACTGAAACT
GTGGAAGTAAAACATAGACCCGTCACTATTGGTTTTAAGAAGCATTTCCA
AGGTGTAGGCTCCTCAAGAAATAAGATTGGAGTTACAGTTGCTAACAAAA
GATGACCGAAAAGTTGGACCACGGTCATGGAACGATTAGCGGCTTTAACG
ATAGGCGTATCTCGTAGTTTGATGAATACGATACTAGTGAACATAATAAG
AAGACCAGTCATTGCCGACAATATCGTTATCACTATCATGACTGGGTCAT
GGAGTTTCATATAGTCTCGATTATACGGATCAAAACATTTAGTTTTGGCT
TCATTTGTCGTAAAAGGATAATTACATGTTTTACATTTGGACATGCCCTC
GTCTTCTTTGTACTGTTTTTCTGCGCACGCCCCACAATGCCAACCGTAGC
TGTTCTGCCATTTTGCCTCGTGGTATAACCCGTGTCTCAATTCGTAGCCT
TTCTGGCATGTCTTTGGTCGTGTCAAATTGCAATAAGGGTTTGACCTCTG
TATAGCAACTGAAGGATTGAATTCATTTCTAGTCATATAATCATCTGctg
tattttctttaaaattatgTAATCTTTTCCATGTTGCTAATAGGTCATTC
ATAATTTTATCGCTACTCAAGAAGATGTTTGCCAGTTTTTCACGTTTAAC
CATCGGCACGTCATTCCAAACTTCCCACGTGATTCCGACGCTTGAATCGT
AATTGGGGATGACCATTTTGATAAGGAATAGATATTCTTTTGGCATATAC
CGCACCAGATAGATAAAAGCAGAATTGGAATccacaaaattttctttgaa
ttgtaGAGTGTTTGTGACAAACTTATCCATCACCAGACCACCAGGGACGT
TTTGAAATCGCTCGAAATTGTGAACATTTTTGTAATGGCTGCTTGAATTT
GTAAAGTTCCTAGTGAATGGAACAAGAAAGTAGTACTTTTTACGATCTAT
ATTATCTGGGAACATGAAATCGTTAAACAGATCAATTTTGAACAGTCTTT
GATGGGAACTTCCGTAGCCGTAAGCAACCAAGATTCTCATATGTGGATCT
TCTTCTAGAATCTGTAAAACGTTGTTAACACTAGTTAGATTTTGGTAATC
CATGAGGATTTCTTTGAAACATTTGTTACTCTTTTCCTCTTGGTCTAACC
GCATTGCCACACAAAATGCTGAATCTGTAGGACGCTCTTTACAAGCCTTC
GTAATGAGGTTTTCATCCTCTTGATATTCTTTCGCATACACTATTCCGAA
ATAAGTCACACCCATATCCATTGCTACCCGGAAGACAGAATctttttgat
tctctgaaacaaaACTTGATTCATGGCTAAAAAGGTTGTAAGACCTTTCG
CGGAGTTGGGAAGGCAACATTGGTTGAAAAGTTACTGCCAGCAGAATAAC
CTTTTCGTTCACCAAAAGATAACTAGCTAGCCTGGTCAATTCATATGACA
TATACGTGAACAGTATACTCATCTCGTCTTTACGAAATATCATCTTTGCT
TTCTTGTTCAGGCATTGTTCTGTAAAGTTTGATTCTGTGTCTTCAGAATA
AGATAATACAATCTCATGTAGATATTCGGGTGAGTTTTGCACGTCAATGA
AACAAGTTCTGTTGTGCAGTTTGACATCTTGCGAGAGATTATTTGCATTC
TTCCATGCATCCACACAACGAAATTGCTCGTCCGGTGGACAATTAGTCAA
AGTCACTAACCCAAGGATTGTGCTATATCTACTGTTACTATGGAGACAAT
CTGCCGTCGATAGTAAGTAAATACTATGCAGCCATAGAAT Coding sequence (CDS) from alignment at scaffold_511:204432..207321 >TCONS_00069986 ID=TCONS_00069986|Name=TCONS_00069986|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_511:204432..207321 (Clytia hemisphaerica)
TCACTTTCGAGTAGGTATCTTTATTCGAGTGAGAGCCGGTATATCTTTCA
CTCTATGCATTTTCTCATCAAAGTTCTTCTTCCGTTTCTCTTGAAAGGCT
TTCTTCGTATTTTTGTTCGGCTTCAACAGCACCACGTACAATTTGTACGc
ataaatcaaagaaaaatgaagaaaattcatAGTGAGTATCGAAGCCCACA
TGATAACATCTCGTGTTTTCGCGCTTTTTTGTGTGAAGTAAATGGCGGAT
AACGCTCCCAGTAGTAGTACTGATGTGAAAGATGAATAAATAACATGCGT
TGTCTCCTTGAAATGTGATGGTAGATTACGCGCTCGCACTGCTTGAATAC
CATTGGCTAAAACCAGCACTAAGATGTACACTATTTGTATAATGATATGA
TTATTGTTTGTACACGATATCTCCCTCGTTTGAGTTGCGAAATTTCGATG
AGTTTCTGGTACCGGCCTTCCATTCTGAAAAGTTGAGGCCAGAATAGCTA
AATCGATTAATATAGTCATTCCTACGATTAACCATTCTAAGATTGCAATg
gctttttgtttcttttttgaatGAACCATCTTCGAATTAAATATGACGTG
TAATTTCTGTGTCTTTGCTAAGTTGACTGAAACTGTGGAAGTAAAACATA
GACCCGTCACTATTGGTTTTAAGAAGCATTTCCAAGGTGTAGGCTCCTCA
AGAAATAAGATTGGAGTTACAGTTGCTAACAAAAGATGACCGAAAAGTTG
GACCACGGTCATGGAACGATTAGCGGCTTTAACGATAGGCGTATCTCGTA
GTTTGATGAATACGATACTAGTGAACATAATAAGAAGACCAGTCATTGCC
GACAATATCGTTATCACTATCATGACTGGGTCATGGAGTTTCATATAGTC
TCGATTATACGGATCAAAACATTTAGTTTTGGCTTCATTTGTCGTAAAAG
GATAATTACATGTTTTACATTTGGACATGCCCTCGTCTTCTTTGTACTGT
TTTTCTGCGCACGCCCCACAATGCCAACCGTAGCTGTTCTGCCATTTTGC
CTCGTGGTATAACCCGTGTCTCAATTCGTAGCCTTTCTGGCATGTCTTTG
GTCGTGTCAAATTGCAATAAGGGTTTGACCTCTGTATAGCAACTGAAGGA
TTGAATTCATTTCTAGTCATATAATCATCTGctgtattttctttaaaatt
atgTAATCTTTTCCATGTTGCTAATAGGTCATTCATAATTTTATCGCTAC
TCAAGAAGATGTTTGCCAGTTTTTCACGTTTAACCATCGGCACGTCATTC
CAAACTTCCCACGTGATTCCGACGCTTGAATCGTAATTGGGGATGACCAT
TTTGATAAGGAATAGATATTCTTTTGGCATATACCGCACCAGATAGATAA
AAGCAGAATTGGAATccacaaaattttctttgaattgtaGAGTGTTTGTG
ACAAACTTATCCATCACCAGACCACCAGGGACGTTTTGAAATCGCTCGAA
ATTGTGAACATTTTTGTAATGGCTGCTTGAATTTGTAAAGTTCCTAGTGA
ATGGAACAAGAAAGTAGTACTTTTTACGATCTATATTATCTGGGAACATG
AAATCGTTAAACAGATCAATTTTGAACAGTCTTTGATGGGAACTTCCGTA
GCCGTAAGCAACCAAGATTCTCATATGTGGATCTTCTTCTAGAATCTGTA
AAACGTTGTTAACACTAGTTAGATTTTGGTAATCCATGAGGATTTCTTTG
AAACATTTGTTACTCTTTTCCTCTTGGTCTAACCGCATTGCCACACAAAA
TGCTGAATCTGTAGGACGCTCTTTACAAGCCTTCGTAATGAGGTTTTCAT
CCTCTTGATATTCTTTCGCATACACTATTCCGAAATAAGTCACACCCATA
TCCATTGCTACCCGGAAGACAGAATctttttgattctctgaaacaaaACT
TGATTCATGGCTAAAAAGGTTGTAAGACCTTTCGCGGAGTTGGGAAGGCA
ACATTGGTTGAAAAGTTACTGCCAGCAGAATAACCTTTTCGTTCACCAAA
AGATAACTAGCTAGCCTGGTCAATTCATATGACATATACGTGAACAGTAT
ACTCATCTCGTCTTTACGAAATATCATCTTTGCTTTCTTGTTCAGGCATT
GTTCTGTAAAGTTTGATTCTGTGTCTTCAGAATAAGATAATACAATCTCA
TGTAGATATTCGGGTGAGTTTTGCACGTCAATGAAACAAGTTCTGTTGTG
CAGTTTGACATCTTGCGAGAGATTATTTGCATTCTTCCATGCATCCACAC
AACGAAATTGCTCGTCCGGTGGACAATTAGTCAAAGTCACTAACCCAAGG
ATTGTGCTATATCTACTGTTACTATGGAGACAATCTGCCGTCGATAGTAA
GTAAATACTATGCAGCCATAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069986-exon-scaffold_511-1491911889:204432..207321 | TCONS_00069986-exon-scaffold_511-1491911889:204432..207321 | Clytia hemisphaerica | exon |
| TCONS_00069986-exon-scaffold_511-1510915933:204432..207321 | TCONS_00069986-exon-scaffold_511-1510915933:204432..207321 | Clytia hemisphaerica | exon |
| TCONS_00069986-exon-scaffold_511-1575043694:204432..207321 | TCONS_00069986-exon-scaffold_511-1575043694:204432..207321 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:204432..207321 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00069986 vs. Swiss-Prot (Human)
Match: GRM1 (Metabotropic glutamate receptor 1 OS=Homo sapiens GN=GRM1 PE=1 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 2.782e-23 Identity = 77/321 (23.99%), Postives = 158/321 (49.22%), Query Frame = 1
Query: 1378 KWQNSYGWHCGACAEKQYKEDEGMSKCKTCNYPFTTNEAKTKCFDPYNRDYMKLHDPVMIVITILSAMTGLLIMFTSIVFIKLRDTPIVKAANRSMTVVQLFGHLLLATVTPILFLEEPTPWKCFLKPIVTGLCFTSTVSVNLAKTQKLHVIF--NSKMVHSKKKQKAIAILEWLIVGMTILIDLAILASTFQNGRPVPETHRNFATQTREISCTNNNHXXXXXXXXXXXXXANGIQAVRARNLPSHFKETTHVIYSSFTSVLLLGALSAIYFTQKSAKTRDVIMWASILTMNF-LHFSLIYAYKLYVVLLKPNKNTKKAF 2331
K + S W C AC E +Y +DE CK C+ + N T C +P Y++ + I+ S + L+ +F +++F+ RDTP+VK+++R + + L G + L V P + +PT C+L+ ++ GL S + KT ++ I + K + ++K + A + +I + I + L ++ + P+P + I T+N ++ + Y +L+++ A + RN+P++F E ++ ++ +T+ ++ A IYF +I ++++ + ++ K+Y+++ KP +N + AF
Sbjct: 538 KGEVSCCWICTACKENEYVQDE--FTCKACDLGWWPNADLTGC-EPIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYRDTPVVKSSSRELCYIILAG-IFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYF----GSNYKIITTCFAVSLSVTVALGCMFTPKMYIIIAKPERNVRSAF 850
The following BLAST results are available for this feature:
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