TCONS_00069998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069998
Unique NameTCONS_00069998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069998 ID=TCONS_00069998|Name=TCONS_00069998|organism=Clytia hemisphaerica|type=transcript|length=223bp
GGATGCTTGAATCGGCAATCTTTGCCTGTGATGCCATATTTACATTTTCC
TTTCTTGTAAAAGTTACAAACTGGAGTTTCATCAGAGACTTTGTCTTTGG
TTGTAGTATTATCCGAAGAATAGGTTGTAGTATTATCTGAAGATAAGGTT
GCGTCGTTTTGTAATTCGcgttgaaatttagattttaggaAATTAGTCCT
ACCCAGGTATATTCCATCAACTA
Run BLAST on NCBI

transcript from alignment at scaffold_511:379058..379280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069998 ID=TCONS_00069998|Name=TCONS_00069998|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at scaffold_511:379058..379280 (Clytia hemisphaerica)
TAGTTGATGGAATATACCTGGGTAGGACTAATTtcctaaaatctaaattt
caacgCGAATTACAAAACGACGCAACCTTATCTTCAGATAATACTACAAC
CTATTCTTCGGATAATACTACAACCAAAGACAAAGTCTCTGATGAAACTC
CAGTTTGTAACTTTTACAAGAAAGGAAAATGTAAATATGGCATCACAGGC
AAAGATTGCCGATTCAAGCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043577XLOC_043577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069998-exon-scaffold_511-1491911889:379058..379280TCONS_00069998-exon-scaffold_511-1491911889:379058..379280Clytia hemisphaericaexon
TCONS_00069998-exon-scaffold_511-1510915933:379058..379280TCONS_00069998-exon-scaffold_511-1510915933:379058..379280Clytia hemisphaericaexon
TCONS_00069998-exon-scaffold_511-1575043694:379058..379280TCONS_00069998-exon-scaffold_511-1575043694:379058..379280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:379058..379280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25239	5.42057	0	1.50336	7.98473	8.64135	10.6083	17.5522	4.98504	0	1.19589	5.75845	1.03181	2.44581	0	1.30786	6.9783	6.4697	4.81879	0.141059	1.46147	5.22097	1.35341	2.32953	3.83012	6.37992	5.33918	0	7.33057	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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