TCONS_00070000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070000
Unique NameTCONS_00070000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070000 ID=TCONS_00070000|Name=TCONS_00070000|organism=Clytia hemisphaerica|type=transcript|length=609bp
AAGAAAAACTAGCTATAGTCAGATTCAAAGTTCAAAATTCCTTTCCGCCT
TTCAGCTTTTTGGTTGGCGAATGTTTACGAAGACAGGGTATATACATATG
CTGAAACATAATGACTGCTCAAAAATCAAGGCTTGACCTCAGTTCCAACA
AAACAGTCAGCCAACACAGAGTCACGGGACAGGTCATTATCACTCTGACA
ATTTTTGGAAGACTCCTTTGGTTTTATTCGAAGGTTCAATGTCTGTTATT
CCAAAAGTCATTGCAACATGtttcttgttatttttcatAGACCCAAAAGC
ATTAATGATTCTCACGTTTGAAGTGAACTGTCCGTTTATATATCCAGGTT
CCTTCCCTCTAACCATGTCCAAAACAACACGAACCCATAACTCTTTCCGT
CTTTTTGGTCTCTGACTCAACTCTGCTCTCTGTTTGTCGGatggaaaatt
gaccaaaactgATGAAGGTGGTCAGTGTTATTGTTACTGCTATCGTCAAA
TCTCACCAGGTTCCACAAATTGGTACAAAATGAGTCACAATTGCCTCCTA
TGACGTTCAGGAGTCGATCAGATatctcattttttacaaaaatacaacTC
GCCTCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_511:424838..425446

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070000 ID=TCONS_00070000|Name=TCONS_00070000|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_511:424838..425446 (Clytia hemisphaerica)
CAAAGAGGCGAgttgtatttttgtaaaaaatgagatATCTGATCGACTCC
TGAACGTCATAGGAGGCAATTGTGACTCATTTTGTACCAATTTGTGGAAC
CTGGTGAGATTTGACGATAGCAGTAACAATAACACTGACCACCTTCATca
gttttggtcaattttccatCCGACAAACAGAGAGCAGAGTTGAGTCAGAG
ACCAAAAAGACGGAAAGAGTTATGGGTTCGTGTTGTTTTGGACATGGTTA
GAGGGAAGGAACCTGGATATATAAACGGACAGTTCACTTCAAACGTGAGA
ATCATTAATGCTTTTGGGTCTatgaaaaataacaagaaaCATGTTGCAAT
GACTTTTGGAATAACAGACATTGAACCTTCGAATAAAACCAAAGGAGTCT
TCCAAAAATTGTCAGAGTGATAATGACCTGTCCCGTGACTCTGTGTTGGC
TGACTGTTTTGTTGGAACTGAGGTCAAGCCTTGATTTTTGAGCAGTCATT
ATGTTTCAGCATATGTATATACCCTGTCTTCGTAAACATTCGCCAACCAA
AAAGCTGAAAGGCGGAAAGGAATTTTGAACTTTGAATCTGACTATAGCTA
GTTTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043579XLOC_043579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070000-exon-scaffold_511-1491911889:424838..425446TCONS_00070000-exon-scaffold_511-1491911889:424838..425446Clytia hemisphaericaexon
TCONS_00070000-exon-scaffold_511-1510915933:424838..425446TCONS_00070000-exon-scaffold_511-1510915933:424838..425446Clytia hemisphaericaexon
TCONS_00070000-exon-scaffold_511-1575043694:424838..425446TCONS_00070000-exon-scaffold_511-1575043694:424838..425446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:424838..425446 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.133991	0.119241	0	3.01137	2.21046	2.2705	3.98776	3.48664	1.58508	3.61074	2.05716	2.92051	2.46387	1.63237	1.36782	0.273802	1.21316	0	0.0986615	0.51467	0.462245	0.251894	0.231401	0.531803	1.1482	0.643403	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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