TCONS_00070008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070008
Unique NameTCONS_00070008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070008 ID=TCONS_00070008|Name=TCONS_00070008|organism=Clytia hemisphaerica|type=transcript|length=352bp
ACTGACCTCTCATCAGACACCTCAATATCCTCCACTCGACCTCGATCAAG
ATCTCTTCCTCCAACGCCAAGGAACCAATCACTACCACCAACACCTAATG
TTATTATAGACAACAACAATGTAAATACAGACAGAACCCTTGATGGTGTT
TATCTAGGAAGAACTggctttttgaagaaaatatttcaaagagaACTTGA
AAACAATACTAAAGCTTACATCAGACTCTACAGTCCTTCAATCATCTGAC
AAATCAAAAGATGAAACCGAGATACACAACACACCACGAACCTGCCGATT
TTATGTCAAAGGTAAATGCAAGCACGGTATTCGAGGCAAGAACTGCCAGT
AT
Run BLAST on NCBI

transcript from alignment at scaffold_511:632743..633094

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070008 ID=TCONS_00070008|Name=TCONS_00070008|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at scaffold_511:632743..633094 (Clytia hemisphaerica)
ATACTGGCAGTTCTTGCCTCGAATACCGTGCTTGCATTTACCTTTGACAT
AAAATCGGCAGGTTCGTGGTGTGTTGTGTATCTCGGTTTCATCTTTTGAT
TTGTCAGATGATTGAAGGACTGTAGAGTCTGATGTAAGCTTTAGTATTGT
TTTCAAGTtctctttgaaatattttcttcaaaaagccAGTTCTTCCTAGA
TAAACACCATCAAGGGTTCTGTCTGTATTTACATTGTTGTTGTCTATAAT
AACATTAGGTGTTGGTGGTAGTGATTGGTTCCTTGGCGTTGGAGGAAGAG
ATCTTGATCGAGGTCGAGTGGAGGATATTGAGGTGTCTGATGAGAGGTCA
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043587XLOC_043587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070008-exon-scaffold_511-1491911889:632743..633094TCONS_00070008-exon-scaffold_511-1491911889:632743..633094Clytia hemisphaericaexon
TCONS_00070008-exon-scaffold_511-1510915933:632743..633094TCONS_00070008-exon-scaffold_511-1510915933:632743..633094Clytia hemisphaericaexon
TCONS_00070008-exon-scaffold_511-1575043694:632743..633094TCONS_00070008-exon-scaffold_511-1575043694:632743..633094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:632743..633094 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.53682	0.516953	0.59818	1.7523	0	0	0	0.298612	0.228158	0.57988	0	0	0.341806	0.171355	0.18143	0	0	0.493005	0.791194	0	1.2023	0.953617	0.68285	1.45998	0	0	2.04113	0.772712	0.275367	0.280555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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