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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070032 ID=TCONS_00070032|Name=TCONS_00070032|organism=Clytia hemisphaerica|type=transcript|length=1050bp
ccgtgtttgcagattttcattggattttttccttatattcatttctatgt
tttttacacaaaaacattattgataacaatgctcaccatcNTTTCTATgt
ttttcagacaaaaacattattgataacaatgctcaccatcaagcatcatt
caattgtcaataaaactgatttttgcgaccagaactttctatttattttt
tccctacaacccttccctctaccccccatcaacaatcaatgatgaattaa
ttgtgttatgcattttcgctaaacgctatattttctgactgatttttttc
atttttctcctcgcatttctatctaactttcatcatcaggtaggtccatt
cagcatctataGCTTGTCACTTTTAATACTAGCACTTTTTTTGGAGAAAC
TATAATTTTGCAACAAacactttgatttttttatgtaGATAAGAATGGAT
CATAGctttaaatattttgcagtgccagccaaaataattatttgttGACA
TTCTTTGGAACAATAAGATGGAACCACTGAACTTTTTCATTCACACTGTA
ATAGACTAAAACATTTCTTTCTAATTTACAAGGGCCTTGCATGTTCTGTG
GTAACCTTGTGTGTACCCCAGACGATCAAGAAATAATCAATAGTGAGCCA
TAGGCTAAATAATTTCTCTCTATTTTACAAGGGCCTTGCATGTTCTGTGG
TAACCTTGTGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGCCATAGGCTAAATAATTTCTCTCTATTTTACAAGGGCCTTGCA
TGTTCTGTGGTAACCTTGTGTGTACTCCAGAAGATCAAGAAATAATTAAT
CGTGAATCAAAACAAGGACGAAAATTGAAAGACAAATTGTTGTTGCAGCA
TGTTCCGgATGATGCAGTTGAAAAAGAGAAAGACGCAGGGTTACagaggg
ggggggtttcagggggtacccgattccgtaattccgccaattttttctcc
aatttccgtcacaccgtcttaaattgaaccaaaattccgtcaccgaaaat Run BLAST on NCBI transcript from alignment at scaffold_512:126944..128563- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070032 ID=TCONS_00070032|Name=TCONS_00070032|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at scaffold_512:126944..128563- (Clytia hemisphaerica)
CCGTGTTTGCAGATTTTCATTGGATTTTTTCCTTATATTCATTTCTATGT
TTTTTACACAAAAACATTATTGATAACAATGCTCACCATCNTTTCTATGT
TTTTCAGACAAAAACATTATTGATAACAATGCTCACCATCAAGCATCATT
CAATTGTCAATAAAACTGATTTTTGCGACCAGAACTTTCTATTTATTTTT
TCCCTACAACCCTTCCCTCTACCCCCCATCAACAATCAATGATGAATTAA
TTGTGTTATGCATTTTCGCTAAACGCTATATTTTCTGACTGATTTTTTTC
ATTTTTCTCCTCGCATTTCTATCTAACTTTCATCATCAGGTAGGTCCATT
CAGCATCTATAGCTTGTCACTTTTAATACTAGCACTTTTTTTGGAGAAAC
TATAATTTTGCAACAAACACTTTGATTTTTTTATGTAGATAAGAATGGAT
CATAGCTTTAAATATTTTGCAGTGCCAGCCAAAATAATTATTTGTTGACA
TTCTTTGGAACAATAAGATGGAACCACTGAACTTTTTCATTCACACTGTA
ATAGACTAAAACATTTCTTTCTAATTTACAAGGGCCTTGCATGTTCTGTG
GTAACCTTGTGTGTACCCCAGACGATCAAGAAATAATCAATAGTGAGCCA
TAGGCTAAATAATTTCTCTCTATTTTACAAGGGCCTTGCATGTTCTGTGG
TAACCTTGTGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGCCATAGGCTAAATAATTTCTCTCTATTTTACAAGGGCCTTGCA
TGTTCTGTGGTAACCTTGTGTGTACTCCAGAAGATCAAGAAATAATTAAT
CGTGAATCAAAACAAGGACGAAAATTGAAAGACAAATTGTTGTTGCAGCA
TGTTCCGGTACGGAAGTATACACATTTTTTTATTTATATGCATAACACTT
ATAAATAATTTAAACATAGCTAAGGCTGAGATTAGGGCTCGGAAGCAATA
TATCTACTGGGTGTCGCAGATAAAAGTCTTCTTTTTGAAGTGAATTTGAG
TTCTATGAATCGTCTGAACTTGACAAACGACCCCTTCAAGTTTAAAAGTT
TATCCTTCTTCTTTCCAATGCCAAAAGATTGATTCTTTTAACAGTTAATA
AAACCTGAGAAATCTCGTTTCAAAGAGAGAATTTATTTTCTGGGACACCT
GTTAGTTTTATAGAACAATATGAATTTAACCATATGCCCGGCCTAAGCTC
AAATGAGCCATATCACCATATGCTTAAGAAAAAATTATTGTTCAAGCCCC
CTTTCGTTATTTCGGTCATATAAATATTTTAAAACACAGTTTAAAAAATT
TCTTCATAGATAATTTTTTATATCAGAGGAGGACACTACTATTTAACAAA
ATTTCACTACTGATGGAAAAAAATCTTTCCATATCTCAAGAGTATCATTC
ACCACTGATTTTTTTTGTTTTCTTCAGGATGATGCAGTTGAAAAAGAGAA
AGACGCAGGGTTACAGAGGGGGGGGGTTTCAGGGGGTACCCGATTCCGTA
ATTCCGCCAATTTTTTCTCCAATTTCCGTCACACCGTCTTAAATTGAACC
AAAATTCCGTCACCGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070032-exon-scaffold_512-1575043694:127657..128563 | TCONS_00070032-exon-scaffold_512-1575043694:127657..128563 | Clytia hemisphaerica | exon |
| TCONS_00070032-exon-scaffold_512-1575043694:126944..127086 | TCONS_00070032-exon-scaffold_512-1575043694:126944..127086 | Clytia hemisphaerica | exon |
| TCONS_00070032-exon-scaffold_512-1510915933:127657..128563 | TCONS_00070032-exon-scaffold_512-1510915933:127657..128563 | Clytia hemisphaerica | exon |
| TCONS_00070032-exon-scaffold_512-1510915933:126944..127086 | TCONS_00070032-exon-scaffold_512-1510915933:126944..127086 | Clytia hemisphaerica | exon |
| TCONS_00070032-exon-scaffold_512-1491911889:127657..128563 | TCONS_00070032-exon-scaffold_512-1491911889:127657..128563 | Clytia hemisphaerica | exon |
| TCONS_00070032-exon-scaffold_512-1491911889:126944..127086 | TCONS_00070032-exon-scaffold_512-1491911889:126944..127086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:126944..128563 - |
Blast
The following BLAST results are available for this feature:
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