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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070036 ID=TCONS_00070036|Name=TCONS_00070036|organism=Clytia hemisphaerica|type=transcript|length=526bp
TAAGATGATACTGGATTCTTATCCCCGATTGGAAGAATACTAATCGTTTG
GAAATCTCCACTGGATTGTAACATCAAAAaatttttcaaaataatacaca
tcacatttcaaaatgaagacTTGGTGTTTGTTTGCGATCACTTTGGTTAT
GACTTTCATAGAGAGTAATGCTATCTTCCTGACGCACAATGTTCCTGATG
TTTATGCAAGAGCTAAGAAAGCAGAAAGGTCGGACATAATCATCCTATGC
AGCAAAAATCCTTCACTATGCAATCGTTTGAGGTCAATGGGTATGAAACA
CCACAAACGAAGCACAATGGACAAATCAAACGATTTTTTACAAAACGATT
TTGACTTTGAAGAATACCATGAGGAGAACAACAGACGAACGAATGATGAC
AAAGCATCAAAACGAACAATCAAGAAGTACTACCTAGTTGAAGAAGGCAA
ATAATGAATAAGAAATTGACATTATCTTTTTGGGTTATTTAAAAAGTATG
ATGGCTTTTTCGACAGTTCTGTAAAa Run BLAST on NCBI protein sequence of TCONS_00070036-protein >TCONS_00070036-protein ID=TCONS_00070036-protein|Name=TCONS_00070036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKTWCLFAITLVMTFIESNAIFLTHNVPDVYARAKKAERSDIIILCSKNP
SLCNRLRSMGMKHHKRSTMDKSNDFLQNDFDFEEYHEENNRRTNDDKASK
RTIKKYYLVEEGK Run BLAST on NCBI transcript from alignment at scaffold_512:185119..190501- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070036 ID=TCONS_00070036|Name=TCONS_00070036|organism=Clytia hemisphaerica|type=transcript|length=5383bp|location=Sequence derived from alignment at scaffold_512:185119..190501- (Clytia hemisphaerica)
TAAGATGATACTGGATTCTTATCCCCGATTGGAAGAATACTAATCGTTTG
GAAATCTCCACTGGATTGTAACATCAAAAGCAAGAGATTAACTCTGTATT
TAAAATTTTCATTTTATGAGATAGGGGTATATAAGTTCTATTTGTACTAC
ACTGGAAGTGTTCTGCGTGGCAAAAATCTAATCCCATTTTGAGTAATTAC
AGTCTTTTAAATTCGAACCTCTTTGACTAGAATGCCTTTTTAACTCGAAC
AAGTTTTCTAGTCCCCCTCCAGTTAACAATGCCTTACTCCATAACTCCAT
AACTCGAAATTTCCTTAACTCGAACAAATTTGTATTCTCCGTGTGTGTTC
GAGTTAAAGAGACTCCACTGTAGAACTATTCTGAGTATATGGATGTCCAT
AAGATTATCTTGTATACTCGAATTTTCTTGGAAAAAAAGATTTTCAGGTA
ATCGTATTTTAGGCGCCTAAAATTCCACTTGGTTGAATGAAACATTGCTC
TCAAGGAAGCAAAATAAAACGTCATAAAAGCTTTTGATGGGGGAAATTGC
TATAAATAAAGGGTATCTAATCGTAAAATGTGTTTCCCTATTCTCTGAAT
AACCCAATGGGGGCTAGGAAGAAAAAAAGAAAACAATCATTTAATCTTGA
ACATTTATTTTTTCCTGCCCTCTATCTCTTAAGCCGTCTTTTTCAACTNA
AAATCATTTAATCTTGAACATTTATTTTTTCCTCCCCTCCTCTCAATATT
CTAAGCCGTCTTTTTCAACGGTAATCCAGTTTGATTCGTCAATAGCTAGC
TGGGATCATTTCTAGATTTGAAATATCAACAATACACGTTTTTTTATAAG
AACAAACTATATAAGAACATAAGGCTTCGATGGCCAAAATGTTAAGAGCA
AGTTAAGAACATTTTTAGGCTTCACGGTCTCGAAAACAGCCAATTTTTTA
GGAAAATGGAAAAAAATACATTAAAAATAGGGAAAATATGAGAACAACTT
AAGAACATTTTTAGGCTTGAAACTCAAAAAGTTAAGAACATTCGAAGGCT
TCAAAAATTTTGGATGTTCTTATAAAAAAGCGTGTACCCAAAAAAAGGTT
TTGATTTTTTCCCTCCTTTGATTATATCCTTTTTTTGTTGATAATATCCC
ATCACCTTATTGTTGTAATGTGTTTCAATTCATTAATCATACAACTTCTT
AGCAAGCATCAAAATTTATAAGGATTTGTATGAAAGGAAAAAAAACCACA
AAAAAAGGGTTCAAAAATTCAAAAGTCTAATGATAGCAATACACTTTACA
AACAACAAACCCTTATAATTCTGGCTCCTTATTCTCCCTATAGAGTACTC
ACCATGTTAAAAAAAACTCTCTTAGGAAAGGGAGGTACCCATAGGAAAAA
ATCATTGATACTTAAATCCATTCTGAAGCAACCCCCCTTTTACTTTTTCT
TCCTATTCCGCTTAAAAACATCCTATTGAGGGGGTATTGTGTGTTGTCGA
GAGCGAAAAGTTGTATGAAAAACATAAATATATCATTTTCGAGAAACTAG
CCAGCCAGTTACATGAACCTTATCTAACGCTTAGTAAGGAAAAAAGGAAA
GTTAGTTTTGAAAATTAGTACTAGTTATTTAAGGCCTGTGACACACGACG
TCCGTCATTTTAACGTTCAGCTAACGTTCATAACATCCAAAAAACGTTAG
ATGAACGTTGAAACAACGTTGTGTGCCCACTTGGGCTGTGTAATTGGATA
TTTGAGAAGTGCCCTAATAGGCTTGAGCAGGCGTTTTATTTTTTCTTGAT
TTTCTTCATTAGCAATTTCGCTTATTACAATGAAAATAGAGCTAAGTGCT
AATTAAACTTTTAGCACGTCTTATTTGAGGCTTTAATGACACCTTTGTCT
TTTAGTGAGGAAGTAAGTTTTTGAGGATATAAATCTGGGATCTTTGTTGA
AAATCAGTTCTTATCTTTTTTTGACCTCAGTGGATTTTCATCCGTAATTA
CGTAATTTTAACAAAAAAATCTTCATATTTTTTTTTAGAAGATTTTCCAT
TGCTTTTTTTATTCATTGACATAATCAGTTTTTCTTCCGGGAAGACTTGT
GAAAAGAGTTGGTTTTTCCAGGACATAGTTTATTAAACCTTAGGGTCAAT
CTTTCCTTGAATGAACGTGGTCACGAAAGTCAGTGGGAAGTCAGTCTATA
GTATTAGTTCTAGTCCTGTTGAGGTGAGGTGCAATCGCTTGTGATTGACA
GATTGGCATTTTGATTGACAGATTGGCAAGTTGATTGACAGATTGGCAAA
TTGATTGACAGATTGGCAGTTTGATTGATAGATTGACAGTTTGATTGACA
GATTGACAGTTTGATTGACAAGTAATCGGAAAAAAGCCCAATTACAGTTG
ACTCTTTCTAATTCGATCTTCGAAAGACCAAAGCNCAAGTAATCGAAAAG
CCCAATTACAGTTGACTCTTTCTAATTTGATCTTCGAAAGACCAAAGAAT
TCTCTTCGAAGTATAGAAAGATTTGGATTAAGGAGAGTATTTTATATGAC
TTTGCAAGCTGAGGGGAGCAACGTTTTAATTCGAATTAGAGAAATATTCG
AATAATGGGTGTTCGAATTCGAGAAACTTATCTGTAACTGGGGAATGATG
GATAGAAGTTTCGGAATCATTTTATGAATTTTGAAAACAACTTGCTTGAG
TTAAGGAGACATTCGAGTTACAGAGGTTCGATTTAAAGAGACTTGGCTGC
ATTTTCGTTATCTATGTCTGTAATATTTGTTCTAATATCTTAGAATTTTT
CAAAATAATACACATCACATTTCAAAATGAAGACTTGGTGTTTGTTTGCG
ATCACTTTGGTTATGACTTTCATAGAGAGTAATGCTATCTTCCTGACGCA
CAATGTTCCTGATGTTTATGCAAGAGCTAAGAAAGCAGAAAGGGTAAGAT
TTTTGTTCAGCACTAATTCTATTTTATTCAACTGACTCCCTAATTCGATC
TTCACCAAGTGTTCTTTTCGAATTATAGAAAGATTCGGATTACGGAGAGT
TATCTTTTAGACGGCTTTCCTGTTGAGGGAATCAATGTTTTAGTTCGAAT
TACCAAAGTTCGAATTATAGAGAGTTTGTTATATACACTATCAACCCTAG
ACTGGTAACGAAAATACGAAAATTCTTCTCGATGAAGGTATCGAAAACAC
AAGTGAAGGAGTTGTTGAAATATTGTAAATGCATTACCAGTCCCTTCAAA
AAACCGACCACGACGTAAATGGTTGATAGGCGTATTTAACACTTTTCTTA
TTGATGAATTAAGATTTTACCTGCAATCTCGTCCCAGAGCAACTCCAACT
CCTCCTGTGATTTTACTAGATGCGGTAGAACCTTTCATAAGAGCTATAAG
AATCATAAAAAACGAACTAAGGGATTGGGTACAAGTTTGCGTTATTCATA
ACAACCAAGTGTCGTAGACCCCTTACCCTTTCTCAATTCGAAATCAACCA
AAATTGTTCCAAATTCCTTTGAAAAACTGCACTGCAGTTCTACCATACTG
GCAAGAACAAATACCTTATTACACGAATATTACTAGGCAAGTATTCAACG
GCCTTAAAATTAACACGCAAAAAATTAACACGCAAAAAATTAACACGAAT
CTTATTTGCTTTTTCAAGGACACTATACGGCTGGCTTTAACTGAGGGTTT
TTATCAACACGAAGTTTTTTAATTCGTGTTTATAAAATGAGTAGTAATAC
TCGTGTAATAAGGTATAATTACACTGTATATCTCCACCCACCACCCGTCA
TTGCCCCCCCTTTGGCACTTTGCTCCTTCATTCCATCCCCACTGAGGAAA
CACACCGGGTCATTGAGACAGAGGTGTAATTTGCACCTTCATTATACGTA
AGGAGCTTTGCTTTCCAGTTAACAGAGTAAATATCAAAACATTGTTAAAG
TTACAGCCCTGTGTCACTAACCTGGTGGGGCCCCAGCCCACTATAAATTT
GATCAAAATTTATTCCCGGTGTTTGGAAAAATACCCTAATTTCCACCCCA
CTGGAAAATTGACTTGGATTTCTTGCCAATTCGATATCCGATGTAAAAAA
TTGCAGACCGAAATCATCGCACTGGATTTTTTGAGCTAGGATTTTATCCC
CTTTGTGAGATAGAATTCCACCGAGCTGTGAGACAGGGGTGTAATTTATT
TAATTCATCTTCGTTGAAGTAACATTTTGGCTCTAACCATTCTCTAGCGC
AAAGGAGGATGGGATTGCAAGTCGTACAAACAAATACATTTGTATTGTAC
AGATTTGTCAGTATTTTTAGATTCCCCATGGTGTGCTATTTGAATTCATA
CTACAATATAATATCGTTTTTATAATATCAGTCTCGATTGACCACATTTA
TAATCGAATAGAACAGCGTCTTTTAGAATGAACTCTTTTTGGAAATGTTA
ATGTCTATAAAATATTAGAATGAAAAATTAATACATTTTAGTGACTTTTA
AATTCACATCTTAAAACTTTTATCATATTAAAATGAAAAATTAAGATACA
TTTTAATGACATTTAAATTCACATCTTAAAACTTTTATCATATTAAAATG
AAAAATAAATATATTTTAGTGACTTTTAAATTCAAATCTTAAAACTTTTA
GCTAAAGTTCACCTGCTGTAAAATCCGCCTCTAGGCAGGTGCTTTGTCTA
GCCAATCCAAAAAATAACCTTTGAACTTATGAGGAGAAACAAGAAACAGA
TAAAGTATTTAAAAAAAACGTTAATATAAAATTTGAATACAAGTCTACTC
TTTTATTTCAGAATTTTAACCGCAAAATTTAACCGCAAATTTCTTTTTTC
GCATGTAAAGAAATTAAGTTTAGTTGAAAGAATGCAAATTTAATTTTCGA
ATCTTTCTAAAATTTGGACTTGTTTCCAATACCAATCATAAAGAAACCAT
TGTAAAATACTTTCTACAATTTGAATCTCTCTATAATTTGATCAGATAAG
ATTCCCCTTTCCTAGTCCGAATTAGCAAGAGCCAACTGTATGGCCTACGA
TTCCAACTAAATGTTCTTTCCTTCTTCATTTTCCAGTCGGACATAATCAT
CCTATGCAGCAAAAATCCTTCACTATGCAATCGTTTGAGGTCAATGGGTA
TGAAACACCACAAACGAAGCACAATGGACAAATCAAACGATTTTTTACAA
AACGATTTTGACTTTGAAGAATACCATGAGGAGAACAACAGACGAACGAA
TGATGACAAAGCATCAAAACGAACAATCAAGAAGTACTACCTAGTTGAAG
AAGGCAAATAATGAATAAGAAATTGACATTATCTTTTTGGGTTATTTAAA
AAGTATGATGGCTTTTTCGACAGTTCTGTAAAA Coding sequence (CDS) from alignment at scaffold_512:185119..190501- >TCONS_00070036 ID=TCONS_00070036|Name=TCONS_00070036|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_512:185119..190501- (Clytia hemisphaerica)
TCGGACATAATCATCCTATGCAGCAAAAATCCTTCACTATGCAATCGTTT
GAGGTCAATGGGTATGAAACACCACAAACGAAGCACAATGGACAAATCAA
ACGATTTTTTACAAAACGATTTTGACTTTGAAGAATACCATGAGGAGAAC
AACAGACGAACGAATGATGACAAAGCATCAAAACGAACAATCAAGAAGTA
CTACCTAGTTGAAGAAGGCAAATAAATGAAGACTTGGTGTTTGTTTGCGA
TCACTTTGGTTATGACTTTCATAGAGAGTAATGCTATCTTCCTGACGCAC
AATGTTCCTGATGTTTATGCAAGAGCTAAGAAAGCAGAAAGGTCGGACAT
AATCATCCTATGCAGCAAAAATCCTTCACTATGCAATCGTTTGAGGTCAA
TGGGTATGAAACACCACAAACGAAGCACAATGGACAAATCAAACGATTTT
TTACAAAACGATTTTGACTTTGAAGAATACCATGAGGAGAACAACAGACG
AACGAATGATGACAAAGCATCAAAACGAACAATCAAGAAGTACTACCTAG
TTGAAGAAGGCAAATAAATGAAGACTTGGTGTTTGTTTGCGATCACTTTG
GTTATGACTTTCATAGAGAGTAATGCTATCTTCCTGACGCACAATGTTCC
TGATGTTTATGCAAGAGCTAAGAAAGCAGAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070036-exon-scaffold_512-1575043694:190423..190501 | TCONS_00070036-exon-scaffold_512-1575043694:190423..190501 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1575043694:187559..187708 | TCONS_00070036-exon-scaffold_512-1575043694:187559..187708 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1575043694:185119..185415 | TCONS_00070036-exon-scaffold_512-1575043694:185119..185415 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1510915933:190423..190501 | TCONS_00070036-exon-scaffold_512-1510915933:190423..190501 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1510915933:187559..187708 | TCONS_00070036-exon-scaffold_512-1510915933:187559..187708 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1510915933:185119..185415 | TCONS_00070036-exon-scaffold_512-1510915933:185119..185415 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1491911889:190423..190501 | TCONS_00070036-exon-scaffold_512-1491911889:190423..190501 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1491911889:187559..187708 | TCONS_00070036-exon-scaffold_512-1491911889:187559..187708 | Clytia hemisphaerica | exon |
| TCONS_00070036-exon-scaffold_512-1491911889:185119..185415 | TCONS_00070036-exon-scaffold_512-1491911889:185119..185415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:185119..190501 - |
Blast
The following BLAST results are available for this feature:
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