TCONS_00070046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070046
Unique NameTCONS_00070046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070046 ID=TCONS_00070046|Name=TCONS_00070046|organism=Clytia hemisphaerica|type=transcript|length=555bp
CAAGACTCCTAATTTTTGCAAGAGAAAAGTCACACCAGGCAATGGTCGTA
AAGAATGCCGACAAAAAGATACGAAAGAACAAATGACGCGTGATTGCAAG
AAGACATGCCGTTTTTGCGAGCcttgTATGAATTACCACAGAGATTGTCC
AGGTTACGCGTCCGTCAGTTATGGTTATTGCACTGATGATAAGTACAGTG
CTTGGATGGAATGGAAATGTGCTAGATCATGTGGTTATTGTAACCAAAAT
CAAACGAAACCGATGGGCGACGACTGTTACGATCTTTCCGACAAATGTCC
CGATTATGCCGATCATTTTGATGACGATTATTGCAATCATCCGAAATACG
CCAAGTGGATGTCGCAAGCATGCAAAGAAAGTTGCTTATATTGCAAAGAT
TGTACTGACAAAAGTCCTTATTGTGAGACGTTGAAAAAGAACGGCTTATG
CGTCGCAAAGAATCGACAAGTCTATTCCTGGATGGTAATGGAATGCTCCA
AATCGTGTGGTTATTGTTTCGAAAAATCTGTTTTCCAAAAAGACATTACA
AAGTG
Run BLAST on NCBI

protein sequence of TCONS_00070046-protein

>TCONS_00070046-protein ID=TCONS_00070046-protein|Name=TCONS_00070046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
KTPNFCKRKVTPGNGRKECRQKDTKEQMTRDCKKTCRFCEPCMNYHRDCP
GYASVSYGYCTDDKYSAWMEWKCARSCGYCNQNQTKPMGDDCYDLSDKCP
DYADHFDDDYCNHPKYAKWMSQACKESCLYCKDCTDKSPYCETLKKNGLC
VAKNRQVYSWMVMECSKSCGYCFEKSVFQKDITK
Run BLAST on NCBI

transcript from alignment at scaffold_512:320644..323370-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070046 ID=TCONS_00070046|Name=TCONS_00070046|organism=Clytia hemisphaerica|type=transcript|length=2727bp|location=Sequence derived from alignment at scaffold_512:320644..323370- (Clytia hemisphaerica)
CAAGACTCCTAATTTTTGCAAGAGAAAAGTCACACCAGGCAATGGTCGTA
AAGAATGCCGACAAAAAGATACGAAAGAACAAATGACGCGTGATTGCAAG
AAGACATGCCGTTTTTGCGAGCGTGAGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGCGCTTTTGTAATATCACACCATAACACAACCAAAACTGCAACATC
GTCTCCGTGTATTACAGGCTTTATTTACGTTACTGATTGACGCCAGAGAA
TACTATCTAGCGCTATCACTGAGCATTAAAAAAGCTGGTAATACACACGG
AACGAGGTTGCCAAAACTGTTTAACAATTTCTATCCGTTTATGACATGTC
CCGAGAATTGAGAATCTGTCGGTATAATATCAAATAGCAATTGTGGATCG
ACACAAAAAGCGTTCAAAGGGTGCAAGAATTGTCTTCAAATTTGAGAATC
ATCCAAATCATGGATATGGACTATGGATATCGTGCATTCTTTCTTTGCGC
ATCACATTTAACTAGATCTAGAGCGATAAATTTTACTTTCAATACAGCGT
TTGTCTGAAAGCCACGTCGGTCACACTTCATTTCCTATCTAATAATTTCT
CTCTAGCCATCTGCCTTAAACTGATTTTTTTAATTTTCAGCTTGTATGAA
TTACCACAGAGATTGTCCAGGTTACGCGTCCGTCAGTTATGGTTATTGCA
CTGATGATAAGTACAGTGCTTGGATGGAATGGAAATGTGCTAGATCATGT
GGTTATTGTAACCAAAGTGAGTTAAAGAACACCCCAGTGTCACAGATCCG
GTCGGACCCACGCCCCACTACAAATTTTGCCCTCGTAGTTGGTTGATTTT
TTTTAGATTTCGATAGAACTTTTTTGGGAAAAAGGGATAAACTTCCCCAT
CAGGGTGAGACAGGGGTTTAAAAGAGGTCTGTTAAGATCTTTAGGCTTGA
CGAGCTTATGTTAACTTAGCAAAACTAAATCTACAATCATGATCGAAATA
TATTGAGAATTCCGGTTATTTTAACGTTTTCAAGATTTAAAGTTCCGGCG
AGAAAGTCGANGGGGTTTAAAAGAGGTCTGTTAAGATCTTTAGGCTTGAC
GAGCTTATGTTAACTTAGCAAAACTAAATCTACAATCATGATCGAAATAT
ATTGAGAATTCCGGTTATTTTAACGTTTTCAAGATTTAAAGTTCCGGCGA
GAAAGTCGATTTTGGGCTATCTCTTTAATCTAATCAAATATTTCAATTTG
GGATGGGTTGGCAGACTTACAGGCTATATTCTCAGCCTTATTGGACTTTT
TTTGAATTTTTGGATCCTAAGTCTTAAGTCTAGCTTTAAAACTCTACCCT
TCGAACCTACTTTAGAGCACTTACAAATCGATTGTGTTTTCAAAACTTCC
TGGGGAATTTCCCTTTTTTCTTAAATATTATGACCTTNTTTTTTTGAATT
TTTGGATCCTAAGTCTTAAGTCTAGCTTTAAAACTCTACCCTTCGAACCT
ACTTTAGAGCACTTACAAATCGATTGTGTTTTCAAAACTTCCTGGGGAAT
TTCCCTTTTTTCTCAAATATTATGACCTTGATTGTACCATCATGGAAAAA
ACATTCGATTATGACGAGACGATTCCTGATGCAAACTGAATGTTTTCTTT
CATATTTGGCGAGAATTATAAGTAACTTTGGGACAAACTTACCTACGAAA
ATAAGGAGTAATAAATTTCTGAGCCTTAAAGCGATTTGAAGAAAGTAAGA
AACAAGGCATAGTGACTCAAGAGAATGATTTCATCAAAGTGAGCAGATAT
CATGTAATGTTAAGATAGCCCAGCGGTACTTAAACTTGAAGAAAAAGACG
CAGTCATAAATTCAAAGGTCCCTTCTAACAGTATAAAATTTCAGCCTTTT
AAAAAAGCTTTCCCGATTATAGATCAAACGAAACCGATGGGCGACGACTG
TTACGATCTTTCCGACAAATGTCCCGATTATGCCGATCATTTTGATGACG
ATTATTGCAATCATCCGAAATACGCCAAGTGGATGTCGCAAGCATGCAAA
GAAAGTTGCTTATATTGCAAAGGTAAAACACTTATTAAGTCTTTGAAAAA
GCCACGTACTACAGACCCAGTGAGACCCCCTGCCCGTCCGAAAAATATAT
AAAAAAATCGTCCTTTAGTAAAGAATATAACCTGAAGTTTTATCACGTAC
CAGTCCCAAAAGAAATACTGGTCAAGTCCTTTCTTAGGGGAACTAATTTT
GACGAACAGCAAAAATCCTAAAAAGTTGTAAATTTATCAAGGAACTTATT
TTGGTGAGGTAGTATGTTTTTTAAATTCAAATTTGCCAAAGTTAGTTCTC
GCCAAAAATAAGTTCCCTCTTGAGATAATCAAAAGTAGCATTCTATCACT
GACCACCTTTAGAGAAAGATAGATTAACTTAGATATCAAAGGACTGACAG
CTGCAAGTAGGAATTCAAGTTATCTGGGAAATTTCTAGCATCTAATGGTA
TTTTTGTCACGATCCTATGTCCAATATATTTTTGTGGGAAAATTTACCTG
GTAGATTGTTTACTTATTAGATTGTACTGACAAAAGTCCTTATTGTGAGA
CGTTGAAAAAGAACGGCTTATGCGTCGCAAAGAATCGACAAGTCTATTCC
TGGATGGTAATGGAATGCTCCAAATCGTGTGGTTATTGTTTCGAAAAATC
TGTTTTCCAAAAAGACATTACAAAGTG

Coding sequence (CDS) from alignment at scaffold_512:320644..323370-

>TCONS_00070046 ID=TCONS_00070046|Name=TCONS_00070046|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_512:320644..323370- (Clytia hemisphaerica)
ATTGTACTGACAAAAGTCCTTATTGTGAGACGTTGAAAAAGAACGGCTTA
TGCGTCGCAAAGAATCGACAAGTCTATTCCTGGATGGTAATGGAATGCTC
CAAATCGTGTGGTTATTGTTTCGAAAAATCTGTTTTCCAAAAAGACATTA
CAAAGATCAAACGAAACCGATGGGCGACGACTGTTACGATCTTTCCGACA
AATGTCCCGATTATGCCGATCATTTTGATGACGATTATTGCAATCATCCG
AAATACGCCAAGTGGATGTCGCAAGCATGCAAAGAAAGTTGCTTATATTG
CAAAGCTTGTATGAATTACCACAGAGATTGTCCAGGTTACGCGTCCGTCA
GTTATGGTTATTGCACTGATGATAAGTACAGTGCTTGGATGGAATGGAAA
TGTGCTAGATCATGTGGTTATTGTAACCAAAAAGACTCCTAATTTTTGCA
AGAGAAAAGTCACACCAGGCAATGGTCGTAAAGAATGCCGACAAAAAGAT
ACGAAAGAACAAATGACGCGTGATTGCAAGAAGACATGCCGTTTTTGCGA
GCATTGTACTGACAAAAGTCCTTATTGTGAGACGTTGAAAAAGAACGGCT
TATGCGTCGCAAAGAATCGACAAGTCTATTCCTGGATGGTAATGGAATGC
TCCAAATCGTGTGGTTATTGTTTCGAAAAATCTGTTTTCCAAAAAGACAT
TACAAAGATCAAACGAAACCGATGGGCGACGACTGTTACGATCTTTCCGA
CAAATGTCCCGATTATGCCGATCATTTTGATGACGATTATTGCAATCATC
CGAAATACGCCAAGTGGATGTCGCAAGCATGCAAAGAAAGTTGCTTATAT
TGCAAAGCTTGTATGAATTACCACAGAGATTGTCCAGGTTACGCGTCCGT
CAGTTATGGTTATTGCACTGATGATAAGTACAGTGCTTGGATGGAATGGA
AATGTGCTAGATCATGTGGTTATTGTAACCAAAAAGACTCCTAATTTTTG
CAAGAGAAAAGTCACACCAGGCAATGGTCGTAAAGAATGCCGACAAAAAG
ATACGAAAGAACAAATGACGCGTGATTGCAAGAAGACATGCCGTTTTTGC
GAGCATTGTACTGACAAAAGTCCTTATTGTGAGACGTTGAAAAAGAACGG
CTTATGCGTCGCAAAGAATCGACAAGTCTATTCCTGGATGGTAATGGAAT
GCTCCAAATCGTGTGGTTATTGTTTCGAAAAATCTGTTTTCCAAAAAGAC
ATTACAAAGATCAAACGAAACCGATGGGCGACGACTGTTACGATCTTTCC
GACAAATGTCCCGATTATGCCGATCATTTTGATGACGATTATTGCAATCA
TCCGAAATACGCCAAGTGGATGTCGCAAGCATGCAAAGAAAGTTGCTTAT
ATTGCAAAGCTTGTATGAATTACCACAGAGATTGTCCAGGTTACGCGTCC
GTCAGTTATGGTTATTGCACTGATGATAAGTACAGTGCTTGGATGGAATG
GAAATGTGCTAGATCATGTGGTTATTGTAACCAAAAAGACTCCTAATTTT
TGCAAGAGAAAAGTCACACCAGGCAATGGTCGTAAAGAATGCCGACAAAA
AGATACGAAAGAACAAATGACGCGTGATTGCAAGAAGACATGCCGTTTTT
GCGAGCATTGTACTGACAAAAGTCCTTATTGTGAGACGTTGAAAAAGAAC
GGCTTATGCGTCGCAAAGAATCGACAAGTCTATTCCTGGATGGTAATGGA
ATGCTCCAAATCGTGTGGTTATTGTTTCGAAAAATCTGTTTTCCAAAAAG
ACATTACAAAGATCAAACGAAACCGATGGGCGACGACTGTTACGATCTTT
CCGACAAATGTCCCGATTATGCCGATCATTTTGATGACGATTATTGCAAT
CATCCGAAATACGCCAAGTGGATGTCGCAAGCATGCAAAGAAAGTTGCTT
ATATTGCAAAGCTTGTATGAATTACCACAGAGATTGTCCAGGTTACGCGT
CCGTCAGTTATGGTTATTGCACTGATGATAAGTACAGTGCTTGGATGGAA
TGGAAATGTGCTAGATCATGTGGTTATTGTAACCAAAAAGACTCCTAATT
TTTGCAAGAGAAAAGTCACACCAGGCAATGGTCGTAAAGAATGCCGACAA
AAAGATACGAAAGAACAAATGACGCGTGATTGCAAGAAGACATGCCGTTT
TTGCGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043607XLOC_043607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070046-exon-scaffold_512-1575043694:323249..323370TCONS_00070046-exon-scaffold_512-1575043694:323249..323370Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1575043694:322605..322730TCONS_00070046-exon-scaffold_512-1575043694:322605..322730Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1575043694:321299..321448TCONS_00070046-exon-scaffold_512-1575043694:321299..321448Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1575043694:320644..320800TCONS_00070046-exon-scaffold_512-1575043694:320644..320800Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1510915933:323249..323370TCONS_00070046-exon-scaffold_512-1510915933:323249..323370Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1510915933:322605..322730TCONS_00070046-exon-scaffold_512-1510915933:322605..322730Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1510915933:321299..321448TCONS_00070046-exon-scaffold_512-1510915933:321299..321448Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1510915933:320644..320800TCONS_00070046-exon-scaffold_512-1510915933:320644..320800Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1491911889:323249..323370TCONS_00070046-exon-scaffold_512-1491911889:323249..323370Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1491911889:322605..322730TCONS_00070046-exon-scaffold_512-1491911889:322605..322730Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1491911889:321299..321448TCONS_00070046-exon-scaffold_512-1491911889:321299..321448Clytia hemisphaericaexon
TCONS_00070046-exon-scaffold_512-1491911889:320644..320800TCONS_00070046-exon-scaffold_512-1491911889:320644..320800Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070046-proteinTCONS_00070046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_512supercontigscaffold_512:320644..323370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.119183	0	0	0	0	0	1.31726	1.47553	0.32451	4.46072	2.96825	1.13229	1.14918	1.45498	3.62362	0	0.619356	0.382777	0.228119	0.390171	0.71774	0	0	0.508291	0.116835	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top