TCONS_00070087 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070087
Unique Name	TCONS_00070087
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	957

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_513:4983..11529-

transcript sequence

>TCONS_00070087 ID=TCONS_00070087|Name=TCONS_00070087|organism=Clytia hemisphaerica|type=transcript|length=957bp
TACagaataatataataaaaaacaaataagaAAAATGTCATCTTCCAAAC
GAAAattgaaagtgaagaagaatTCGTCCAACGAGGAAAACGTCAAAAAA
CAGATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGA
TGTGACAGAAAAGATCACTTCTGCTTTCAGgGACAAAACAGACTACGAAA
ATGGTAGGATTTAAATCTTTGCAACAATGAATAATAAGTGGACGTTAATG
TCACAAGTAAGGTTTCCTGAgaccaaaagaagaaaaagaatctcATGCTT
TTCATGTTTCGAACAATCAGGATGACGTCACATTCTGCACAAGGCCTTTT
CCACATTGGACAATCAAGAATTTTGTGAAAGATCTGGAGCTtttgaaaga
attgaaaaacGATTTATTAAAGTTGAAATTCAAACACAAATATACTGACT
TGTTCAAGTTTTCACAGAGTGAAGatatcaaaaatcgaaaaacacATTCC
ATATCAACTTTCAGGGACTGTTTGTTTACACAATTTCGAGGATGGTTAGA
AAATGTTTTGGATAGGAAAATGTCGGATGCGATAGATATGTCGTGCGCTC
AATATAATTATACAGatttcttACTGTGTCACGACGATAAAGTTGAAGAT
CGACAAATTGCGTTCATTTTTTATATGGTGCCCGATGATTGGTCCAATGA
AGACGGGGGAAGATTGGATCTATTCAACAATAAAGatGGTCAACCTTCAG
ATTTACACAAATCACTGATTCCATCTTTTAACTCTTTGGTATTTTTCGAA
GTCAGCGATACATCCTTTCACCAGGTCTCCGAAGTGTTATCGAACTCGAA
GACACGTCTCTCCATCTCGGGATGGTTTCATTCGACCACTGATCCGcatt
ttaaacttttcaaacaCGTTGAAACAATCACAAAAACACCGCCACTAGAT
TTAGAGG

Run BLAST on NCBI

transcript from alignment at scaffold_513:4983..11529-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070087 ID=TCONS_00070087|Name=TCONS_00070087|organism=Clytia hemisphaerica|type=transcript|length=6547bp|location=Sequence derived from alignment at scaffold_513:4983..11529- (Clytia hemisphaerica)
TACAGAATAATATAATAAAAAACAAATAAGAAAAATGTCATCTTCCAAAC
GAAAATTGAAAGTGAAGAAGAATTCGTCCAACGAGGAAAACGTCAAAAAA
CAGATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGA
TGTGACAGAAAAGATCACTTCTGCTTTCAGGTGAGAGACTTTTATATTTT
TTTACTCGGAAACTTCCGCAAATTTGAGAGACCACCAATTCTTTTTGTCA
ATTCTACACTCTATCAGGAGCATAATTTTTAATTTTGCGCTGATCTAAGA
GTACGAAAAACCTGTTTAAGGCCTTTTCTGAATTCAGATGCTGATCTAGA
AACTGTCTTTAGAACTATTCAAAGTTATAATTACCTTATGTCTATGCGGC
TAGGCAAGCCTGCCTTTTTTCGAGCAAATAAGTTTGAATAAATGTTTCAT
TCAAACCTTTAAGGTGTATGTACATTAATTTGGCTTAGGGCGTGGCGCTG
ATATTGTTTGATACATATTTCTTTATAAGAACAAATTATATAGGAACATA
AGGCTTTGATGACCAAAGTATTAAGATCATTTTAAGGCTTTGCGGACCCT
AAACAGCCGATTTCATTGCAAAATTAGAATAGGTTTAAATTTTAAATAGT
TCAGAACATCCTGAGGCTGCAAATAGTTAGGGTGTTCTTATATTAAAAAA
CGTTTAATGACTGCCTGCAATTTTTTCTTCTTAGGGACAAAACAGACTAC
GAAAATGGTAGGATTTAAATCTTTGCAACAATGAATAATAAGTGGACGTT
AATGTCACAAGTAAGGTTTCCTGAGACCAAAAGAAGAAAAAGAATCTCAT
GCTTTTCATGTTTCGAACAATCAGGGTGAGGTCTTTTTCAATCGATTTTT
GGTGGGTTTTAGTCATCGCATCGCAAATAAATTTAGACAAGTTTTTCGTG
ACACCCTGGACCCCTTTTGTTGTTGTACTACTAACTCAGTTGAAATACTA
GCACTTTTTTCTGAACTACTTTACACATTCGTATGTGGACAAGCTTCAAA
TCTTAGGTATTGCTTATGAACAGTTTGTGTAGCTTTTGAACCTCGATAAG
CAATTTGATCTACTTAACTGTGATGAATTAAATATAGAAGAGAGAGAAGT
TTAATATCCCAAGGGGGAGAAATCTTAGTGCAAATTCTGACCAATAAAAA
ATGTGCTGCTGAAAGGACTAGATTGATCAAATGGGCTTTTCCAGAAAAAA
TTTGAATATGGGGGGTGGAGGATATAACATTCTTTGGAAATTTACCCCCC
GGATATTGTGACTTTTGACCCCCCCCCAGACAGCAGGGCTAACCCCCTGG
ACAAGCATCAGTTGACTCCATGGACAATCAAAATTACCCTCAAACAGAGA
AAGATTACCCCCTGGACAATGCAAATCTTGTAGATTTTTCACTACCCCCC
GGCCCGGGCATTATATCCTCCATACCCCCCCCCCATGTACGGACATTTTC
GGGAAGAGCCGAATGCTACCATTCATAACGAACCTATCATGTTATGAAAA
TAATGATCAGAAATAAATTTTGACGCTTTATGTTATTCTTATTTGATAGG
GCTTTTCATAAATTATTTTGAGTGCAACGACTGTCTCGTTTTAAAACTAT
TACCAAGGTGATTAAATCCCACAAGTCTTCTTAAGTGTTACTTTTAGAAA
TAGAGTAAATTTCTTACGAACTCCTTTGGGATTTGATTACTATATGCGTA
CAAACTTTCGCGAGCAGAAAATTCGCGATTTTCGCGAATTTTAGCCCTTT
TCGCGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGTCATTCGCGAAAG
TTTATGCTCGCGAAAAATTCTTGACAAAATAGAAAATCTGTAAAACTTTG
AATAAAATGTAACTTTTATGGCACTTTTTAGCCTGCTAAATGACTAAATG
ACTAGTAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTATTTGT
CCCTCTAAGCCAATTTTTCATGTGAAAATTCTTAATTTTATGTCTTGATT
TGCAAAAGTTTGTGCACGCGAAAAATATTTTTTCGTTAAATTTGCGAAAG
TAAATGTCGTGGATTTCGCGATTTTTCGTCCTCGCGAAAGTTTCTGCTCG
TGAAAGTTTGTACGCCTAAAGTAACTGAAATTTTTCGTTCACACTGTAGT
GGCTGCAGCACTACAGAAACAAATTTGCCAGGATGAGATGGTGGGTGACT
CTAGAGTGGCAAGGAGAGCTTACTCCAGGATCCGCACCTGTCTCCAGGCA
CCCCCTTGGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAGATCTT
CTGCTACAGCAGTCTTCATTGCATAAAATCTGCAATTCTAGTCTATTTTC
ACCCCAAAGACATTCTACCAGAATTTTTCTCCCACAGCTCTATTCAATTG
CACAGTCTTGGGGCGCTCAAGTCTACCAAATAAATATGCAAATATTGTGC
ATACTCCACCTCCAAAGCACAGAAAGTTCTTTTCTTATTTTAATTTTCAA
TTTTTCACACAGACTCTACATATTCTCACCTTTAACTCTCTTGGCCTTGG
GATTTTTCCAAAAGCCGATCAAAATAAACAATTTTACATACTCCACAAAA
TACTTCACTTACAAAACATCCTCATTGATATAACTTTGAAACATATTATA
TTCAACAAACTTTGAAACCTCAACAATTCTGGTTATTTTCCGTATTTGCA
CCTAAATTTCAAAAAACCTTTTTAATTTTATCCCTTCTCCGAATGTCACT
TCCTAGGGAGGGTACCCATCTTTCCATATTCACACATCCACAAGCAGCAT
TAGGATAACGATCGCAAATTTCCCGAAATATCACACCATTCTCTATCCCT
TTGGGAGCAATCCTGAAGTGATGGTCCATGATGGGATATTTTATAAAAAA
ACGTGAAAGTTTGTACGCCTAAAGTACCATAAGCAAACCTTCAAAACGAG
GTAAGCGTTGGTCGTGACGTAATTTACGAAAAGATCTATTAAGCCCTTGT
TTTCCATTTAGATGACGTCACATTCTGCACAAGGCCTTTTCCACATTGGA
CAATCAAGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAAAC
GATTTATTAAAGTTGAAATTCAAACACAAATATACTGACTTGTTCAAGTT
TTCACAGGTAAAACACGCAACGTTTTTGTGAGCAGTGCTAGCCCTTCACC
AGGCGTTTCAATGAAGTTCATCTTTTATTGATAAATTTGGGTATTTTAAC
GTTTTTCAGAATTTAATTCCAATACTTCCATTTTATTTCATTGGATATTT
TCGATTTTGGAGAGATTCAGTGGTTAGGCTATATTCTCTCAGCCTTATTG
GAACACTTTTGAGCTTTCGGATCCTGAGATCTGACTGTGTCCCATATTAT
AACTCAGAGTCAAAACATTGCATTCCAGTAGTAACTTAGAGCGCTTAGCA
CCTTAAAATCATTTGTATTGTTTTGTAGGGATTCCCCCTTATTATCAAAT
ATAATACGATTTTCATTTTAGACATAAAAACATCCGAAGCCCTCCATCCA
TCTTAGTGTATTCATGATATGCACCACTGCAATGACTTCACGAAATGATG
CAACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTATTGTTTA
AGTGATGTATTGGGTGGAAAATTATCTGGAAAGTTCTCGGAAGACTCTCC
AGTGGTGCATATCATGAATACACTAAGATGGATGGAGGACGATACGTCTG
GTGACCTTGGACAGGAATCTACACCTTCTTTTTTCTTTCTGCAGAGTGAA
GATATCAAAAATCGAAAAACACATTCCATATCAACTTTCAGGTTTAATTC
ATTCAAAATTACAACCTTTTTGTCAAGAAATTTCCCGAAATGTTTTCGAC
TTTTTTGTTACAATATTTGAGTGTATTTTTCCGGGGAAAACAGAGGGTAT
GTGATGCCAAAGATAGAATCTTCCATCAAAATCATATACAGTGGAGTCTC
CGTAACTCGAATGTCTCCGTAACTCGAACAAGGTTTCATGGTCCCTTCAA
TTAACAATGCCTTATAAACCTTATTCCATATCTCTTAATTCCCTTAACTC
GAACAAATTTAGGTTCCCCGTTCTTTTTCGAGTTATAGAGACTCCATTGG
ATTTCTATGACAAGTTCTATGACAAAAAAGTTACATTATTTAGAGTTTCA
TACTCCCAGAAATTGTTAGATGGTGAACAGGTTATTTCTTCAATAATCCA
AACCAATTTTTATATAGATTTAGTACAATTCATATTTTTTAAAGTTACAA
TTTACAAAGAACTTTCAGTGCAGTATAAAGAGAGGTATTTTCCGTCTCCA
AATTCAACAAAATTCTGCAAAATTTGAAGAATCTTGCTAATTTGCAAGTC
AATTTTCGGCTGATACAAAAAACTTTACTTTGACCTCACGTAAAGTAGAG
ATATTCGTTCAATTGAACATTCTTCTTATAGGGACTGTTTGTTTACACAA
TTTCGAGGATGGTTAGAAAATGTTTTGGATAGGAAAATGTCGGATGCGAT
AGATATGTCGTGCGCTCAATATAATTATACAGGTACGATTCAACTTTCCA
TGAAAATCTAAGTAAAAGTAATAGTAATAACCTCGTTAATTTCCACTTGG
GTTGGGGCACTCAAGGCATGGATTTAAAACAACTATAAGGTACGATTTAA
CTTTTCCATGAAATTACAAGTGTATATTTTGTCCCGAAATCAACCTGGGA
GTTTTGCCTTTAAAAAAACAAATAGTAATTCTCAAGATAAGCAATGTTCC
GTAAGTGCAAAATGAGAAAAAATGAAAAAAAAGTGCACAGGGTTTAAAGA
GTGAGCAAAATTTTAGAAAGATCTAACCAATTTGTGCCTTACAATGGACC
AAAACTTTCAAGCACTGCTATGCAAATTTACTAGAATTTGGCTAAATTTT
GTTTGCGTTGTAAGGGTCCAGTTTTGAGACCCTAATTTTTGTCCTCGGTA
TTTTTTTACTACAGCAACAGAAACATTTTTTTTCAGATTTCTTACTGTGT
CACGACGATAAAGTTGAAGATCGACAAATTGCGTTCATTTTTTATATGGT
GCCCGATGATTGGTCCAATGAAGACGGGGGTATGTTGTTTTATTAATTTG
AAAGCTTTTTGATATTGAATTGACACGGATGTGGAGCAAGATTGGTCAGA
AAGAGGAAAAGAAAAACTTTTTTTGCTTATATCAGCACAATATAACAATA
GGGCGACACTGCCCTGATATGAAACGGGAACACTTTTTATGTGAAAATAA
AACTTTTACTGAATGCATGTCTTATTGCATATTTCTCGTCATTCCCACGT
GGTTCTTGATTTTGTTGATCCGAACCATGATGCGAAATGGTTTTAAAGCA
ACCCACGTATAGAAACCCCCTTTTGAAGTGAAACTGTGGGTGTGATTTTG
TATAATGATTGATTTCGTTTTTTCAGGAAGATTGGATCTATTCAACAATA
AAGGTATATATCATTTCAGCTCCTACATACTAGCTTTTGAGAAATTACTC
CATTTTATTGTTACCCTAATTTCAAATCTTACTTTGAAAAGTTCTTTACT
CTAGTTTATTGATACCCTCATAAATCTTCATTTTCAATACAGTTTTCAAA
GATTTTTCGTAAAACTTTTTCAACAACATTCTTATATTGTTACTTTCAGA
ACTAAAGTGGGTCATGTCTGGCCAGTGTTTTACGAGTAATTCAGTTTTGC
ACGGTGTCATGTTTTGTTTTTTCAGATGGTCAACCTTCAGATTTACACAA
ATCACTGATTCCATCTTTTAACTCTTTGGTATTTTTCGAAGTCAGCGATA
CATCCTTTCACCAGGTGAGAAGGTTCTTTCTGACCTCTCTTGGCCTGGTT
CCTCTCTCGCCCTGGTTTCGCCAATCTCTAAATTTGATTAATGTTCCAGC
GCCTGGCATCACCTGTATGATGAACTACCTCTTTATGGAACTTTCTACAA
TTACCTTAAAATGAGAAAAATCGGTGGATTTACCTGGTCAAACTCCTACC
AAATTTATTAATTTATCCGTGCTTTTTTAGGCTTTTAGTTTATCTAATAA
CGATTTTCGGCTAAAAATATCCTGCAAACACACGACCAACCATCCGCCGA
ATTAAATTCCTGCCCAGATTTCTTCCTTTCAGGTAAAAGATGTACCAACT
TTGACTCTCCTTAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTC
TCCATCTCGGGATGGTTTCATTCGACCACTGATCCGCATTTTAAACTTTT
CAAACACGTTGAAACAATCACAAAAACACCGCCACTAGATTTAGAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043639	XLOC_043639	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_513	supercontig	scaffold_513:4983..11529 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.206153	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.305743	0.661854	0	0	0	0

Blast

[Close]

BLAST of TCONS_00070087 vs. Swiss-Prot (Human)
Match: OGFD1 (Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.121e-50
Identity = 98/183 (53.55%), Postives = 126/183 (68.85%), Query Frame = 3

Query:  345 PFPHWTIKNFVXXXXXXXXXXXXXXXXXXXXXYTDLFKFSQSEDIKNRKTHSISTFRDCLFTQFRGWLENVLDRKMSDAIDMSCAQYNYTDFLLCHDDKVEDRQIAFIFYMVPDDWSNEDGGRLDLFN-NKDGQPSDLHKSLIPSFNSLVFFEVSDTSFHQVSEVLSNSKTRLSISGWFHSTT 890
            PF H  I NF++  + L+ L+ +L+ L F  KY DL+KF QS+D+K R+   IST R  LF  FR WL ++    +   IDMSCA+Y +TD LLCHDD++E R+IAFI Y+VP  W    GG LDL++ ++  QP  + KSLIPS+N LVFFEVS  SFHQVSEVLS  K+RLSISGWFH  +
Sbjct:   60 PFLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILFEDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVP-PWDRSMGGTLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGPS 241

The following BLAST results are available for this feature:

BLAST of TCONS_00070087 vs. Swiss-Prot (Human)

BLAST of TCONS_00070087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OGFD1	1.121e-50	53.55	Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGF...	[more]

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TCONS_00070087 (transcript) - C. hemisphaerica