TCONS_00070091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070091
Unique NameTCONS_00070091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070091 ID=TCONS_00070091|Name=TCONS_00070091|organism=Clytia hemisphaerica|type=transcript|length=607bp
CACTCGTTCGTTAACATCACGTGATGAATTATTCCACGTGGCGCTATTTG
ATTGGTTGATCAAGAAAGACCAAACAAACACATTGTTACAGATCAAATCA
CCATTTTTGGAACACTATCTCATCACACTCGCAGCACAACAGCACCCTGG
CAACAAGAAGACACTTGACTTGGTCTGGATGTATTatgagaaaaacaaca
acttcaTTGCTGCTGcgaaaatccttctcaaactcgcCGAAATGCAAGGA
CCATCACTTACGATTCACAATCGAATGGAATATTTATCCAGGGCTGTGGT
CACCACGAAGACTTTCAGTTCAACTGCTAACTCTAACGAAGGAGAATTCT
TACAGGAGATCGAAGAGAAACTAGATGTAGCTCGTGTGCAATTGAAAATC
TTCGAGGAGCTTTCGAAGAAGAAAAGTAATTCACCGGAAATGAATGACGC
AATGGTTAAACTGAACTCCAAATTGTTCGACATTTCAACTTTATACGGAG
AGTTTGCGGAGGAGTTTTCACTTCCTGAATGCAAGCTGGACATCATCGCT
TGTGCCAATCATAATAATGAAACCCTAGTCAAACAGATCTGGAAAGAAAT
TCAAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_513:16873..20614-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070091 ID=TCONS_00070091|Name=TCONS_00070091|organism=Clytia hemisphaerica|type=transcript|length=3742bp|location=Sequence derived from alignment at scaffold_513:16873..20614- (Clytia hemisphaerica)
CACTCGTTCGTTAACATCTTTACTTTTCTCTCACCGCAGTACGACAACAT
TATCACTCGTTCGTTAACATCACGTGATGAATTATTCCACGTGGCGCTAT
TTGATTGGTTGATCAAGAAAGACCAAACAAACACATTGTTACAGGTTGGT
ATGATTCTTCTAGTGACGACACATCGCTTAAGGAGCGATGGCCAAGTGGT
CAAAGGTGTCAGCGTCTCAAACCAGGGATTCGTGGTTCGAATCCCCGCTC
CTTCCAATGTTCTGTTCAGTTCATAGATAGCCGAGCCGGCTGGCCGTGGA
CCCCGTGGAAACAATGGAAAGACTGTCTACAAGTCCTAGATTACTGGGCT
ATTCACGTAAAATATCGACTCTATCTATCTACACAGTGGTTGTTACTTGT
TGACGATGTGAATTTGTTGATTAAGCAAACCTTTAAATGAATATATTGCT
TTGCATAGCGATCAGAGAGAGAAAACGTTTGTCTATCAGTGATTCCGGCC
TTCTTTTTCGGGATTGTCGGGTCTAAACAAAATTCTTTCAGGCTTACGCG
CATGGGCCGTTGAGCCCGACCGGGGATGCGGTACATCAAAGGCCGACCAT
TATTCCGATAGGACCTTCGTCAGTAATATTATTTATTCCTTCATCTCTTT
CGTGTTGCAGATCAAATCACCATTTTTGGAACACTATCTCATCACACTCG
CAGCACAACAGGTAAGAGGTTTTTAATATCGAATCGTCAATCAATTGATG
TTTGCTTCACCAACAGTCTCCGCCATGCCACTAGACAGGGAAGATTCTTT
CTTATCGGAAAGTCGAAAAATGACTGAATCTCACGCGAAAATGTACGATA
ACGAGCAAAAACTGAAACGTTTTATAGGCGATAAAGCGTTGAATTTCAAG
GTTTTTCACTTGTTTAATTTTGCTTTAATCAATTTTCTTTTGAAACTGCC
CTCGAACGGGAAAGTTGAGCCTAATCAGGAAGCACTGAATAACAGAAAAA
TAGATTGTAATGAAACTTCAGAGAGACCTTCCCGTTTGGGGGGAATCATA
GTTCTGGGAAATTTTTCCAGAAATTTATCCAACTCAAGATAGTGTCAGGC
ACCGACCAATTACAAATCACTACAAACCACCTTTGGCGTTTAATACTTTT
TGTTAACTGGTTTTCAAAGCGGGCTACACGGCTTTTTGCGCAATGCAATT
GGTTCTTTTCGCATGACGACGGGCCTACACTGCCCAGAGTTGCCCGTCGT
CAGGAAAATTCATTGTGACGTCACTCGCAAGCTCGGTCGTTACTTGACCT
CGGGCAATATTTCTCAGTACAGCCCTCACTAACCAGTCATTATTGTATTA
AAGTACTGAATCATCACAAATTTTGTGCGAATCAAACATGGGATGGACTT
CTTTGACTGGATTTTCAAAAGTAAAATCACTTTTGGCAATTTTTTCTTGA
CAGCACCCTGGCAACAAGAAGACACTTGACTTGGTCTGGATGTATTATGA
GAAAAACAACAACTTCATTGCTGCTGCGAAAATCCTTCTCAAACTCGCCG
AAATGCAAGGGTATGCTCATGAATGTTGAAAACAAATTTCTTGTATTTCT
TGTATTATGTTCAGACGTTACGGTTCCGTTCCGTTCCATTCCGAAACGGC
TCCGAAACAAGTGTGAACGTCAAAATTCGAAACGTCAAAAAAAGAAGACT
TTACAAAGCAAAACAAATCGAAACGGTTTCGCTCCATTTTTTTCATCGGA
ACGGAACTGTTCCGAAACGTTTCGAAACCAATATGAACACACTCGATCCG
TGGCGAAAATCATACCGGAGAGAAACGGAACAGTAACGTGTGAACATGGT
CTAAGTGTTCAGATCTTAGGTCTGGTTTAGACGGCCCACTTTTCTCTCTA
CCTAGTCAAAATGTGTATCAGATTCGACAGAAACTTGGTTGTCTAAAGTC
AATGTATTTTTCTCTTTTGACTTCAATGCAAAGACTCCTTTAAATCTTTT
TCAAGCAAAGATTTTAACTGCCATTTTTCTGCCCTCTTTTTGCCTACTCT
AACATGACTTGTGTTGGACTTGGAAGGAAGATATGACGTAGCCTAAACGT
CGTGTAGCTAAAACAGTCTCTTTGGACAGCTACTCTAGGCTAGTATCAAT
GTCTATTATTTCATTTTTCTTTTTTTTCATCCCCATAGACCATCACTTAC
GATTCACAATCGAATGGAATATTTATCCAGGGCTGTGGTCACCACGAAGA
CTTTCAGTTCAACTGCTAACTCTAACGAAGGAGAATTCTTACAGGAGATC
GAAGAGAAACTAGATGTATGCTTCCCCTTCACTTTTTGACGTGCTTTTCT
TTTTTGTCGTATCATTTTCTGAAAGGGCATCCCTTAACGTATCTCCTATT
GTTTGCTTATTATTTTAAACAAAGATAGAATAATCTTTCCCCTCCCGCGC
CTTTTTTGTTTATTCTGCTTTGTCAGCCTCCTTTCGATTATATCATAAAA
AATTTGTTTAAGCTATATCTATGCATGGATTTCGGCGTAGTTTATTTTAT
CATTAGAACATTGACCCAAGATTTCTTTTCTCAGAGTCCACGGCCATCCG
ATCTTCCTATTTGAAACTAGACGAGATTTTTAGTCAGTTTTTTGTTACCT
TTATTCGTCAAAACAAGTGGTTGTCTTCTCTATGTCTTTTCTGAAGCAAT
TATACTACCGATAGCGAGATTAAAAGGTCTTACGGCTATACGGTCATTCC
AGTTCTGTTACGTTAGTCGTTTTTGTCTGGATAGCGCCGGTAGGGATCAA
TCGTGGTTGAATATTTTTCCGGAATAGCCATATAAAACTTATTTCCTCGT
CTAGCTGATAGATCTTAACCCAATACTTTGGAAGTTCGAAGTCTTTTGAT
TGTTACCTCTTTCAATTGTGATTTCAGGTAGCTCGTGTGCAATTGAAAAT
CTTCGAGGAGCTTTCGAAGAAGAAAAGTAATTCACCGGAAATGAATGACG
CAATGGTTAAACTGAACTCCAAATTGTTCGACATTTCAACTGTAAGGGAA
TGTTTTCCGATTTTCTTTATGATTCTAAGGACAGAATTCAAGAGTCTACA
AACGTTTAAGCTGAAATAGATTAATGTGGTAACACTGAAATCAATTTCTT
CCTTGATTTGACACAAAAGATTCCAAAAAAAAAAAGAACATTAATAACGT
GAAGTGAAGCTGATACTTAATTCTTTCATTTTCTTTCTGAATCTTCCTTA
ATTTTAAGTTTTTGAAATACTCTCTCGATAATCTGTCGACCTTAATGAAT
GGGGATGGTGTCCAGTTTGAATTTACAATGGTTAAATATGTTATTGCACT
TATGTTCACATTTATTTTTTACGTCATTTTACCTTGTTAACACTGGGACT
CAAACCTCTTGTAGCGTTAGCGACTATTCATGACATGCACCACTGGAGAG
TCTTCTGAGAACTTTTAGAATTTTCCACCCAATACAATCACTTAAACAAT
AGAAAAAGTGACGTATTGGGTGAAAAAACAAAAACAGAAAAGTAGCATAA
TTTCGTGAAGTCATTGCAGTGGTGCATATCATGAATTGGTTTTTTATCTC
TCTGCTCTCTTTTCTCGTTTTCCAGTTATACGGAGAGTTTGCGGAGGAGT
TTTCACTTCCTGAATGCAAGCTGGACATCATCGCTTGTGCCAATCATAAT
AATGAAACCCTAGTCAAACAGATCTGGAAAGAAATTCAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043640XLOC_043640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070091-exon-scaffold_513-1575043694:20600..20614TCONS_00070091-exon-scaffold_513-1575043694:20600..20614Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1575043694:20471..20546TCONS_00070091-exon-scaffold_513-1575043694:20471..20546Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1575043694:19904..19954TCONS_00070091-exon-scaffold_513-1575043694:19904..19954Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1575043694:19055..19161TCONS_00070091-exon-scaffold_513-1575043694:19055..19161Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1575043694:18300..18426TCONS_00070091-exon-scaffold_513-1575043694:18300..18426Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1575043694:17574..17687TCONS_00070091-exon-scaffold_513-1575043694:17574..17687Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1575043694:16873..16989TCONS_00070091-exon-scaffold_513-1575043694:16873..16989Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:20600..20614TCONS_00070091-exon-scaffold_513-1510915933:20600..20614Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:20471..20546TCONS_00070091-exon-scaffold_513-1510915933:20471..20546Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:19904..19954TCONS_00070091-exon-scaffold_513-1510915933:19904..19954Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:19055..19161TCONS_00070091-exon-scaffold_513-1510915933:19055..19161Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:18300..18426TCONS_00070091-exon-scaffold_513-1510915933:18300..18426Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:17574..17687TCONS_00070091-exon-scaffold_513-1510915933:17574..17687Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1510915933:16873..16989TCONS_00070091-exon-scaffold_513-1510915933:16873..16989Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:20600..20614TCONS_00070091-exon-scaffold_513-1491911889:20600..20614Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:20471..20546TCONS_00070091-exon-scaffold_513-1491911889:20471..20546Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:19904..19954TCONS_00070091-exon-scaffold_513-1491911889:19904..19954Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:19055..19161TCONS_00070091-exon-scaffold_513-1491911889:19055..19161Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:18300..18426TCONS_00070091-exon-scaffold_513-1491911889:18300..18426Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:17574..17687TCONS_00070091-exon-scaffold_513-1491911889:17574..17687Clytia hemisphaericaexon
TCONS_00070091-exon-scaffold_513-1491911889:16873..16989TCONS_00070091-exon-scaffold_513-1491911889:16873..16989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:16873..20614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.723586	0	0	0	1.95463	0.785219	0.519184	2.65883	4.53063	2.34237	0	1.76587e-09	2.51097	0.838054	0	0	0	0	0	0	0	0	0	0	3.03848	6.58742	0	1.04805	0	0
Blast
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BLAST of TCONS_00070091 vs. Swiss-Prot (Human)
Match: NU155 (Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.516e-49
Identity = 91/198 (45.96%), Postives = 142/198 (71.72%), Query Frame = 2 
Query:   17 SRDELFHVALFDWLIKKDQTNTLLQIKSPFLEHYLITLAAQQHPGNKKTLDLVWMYYEKNNNFXXXXXXXXXXXEMQGPSLTIHNRMEYLSRAVVTTKTFSSTANSN---EGEFLQEIEEKLDVARVQLKIFEELSKKKSNSPEMNDAMVKLNSKLFDISTLYGEFAEEFSLPECKLDIIACANHNNETLVKQIWKEI 601
            S+DELF +AL++WLI+ D  + LLQ+ SPFLE +L+ +A        + +DL+W YYEKN +F  AA++L +LA+M    +++  R+EY++RA+++ K  SSTA S+   +GEFL E+EEK++VAR+QL+I E L ++ S+   + DA+ +L+S+L DI+ LYGEFA+ F L ECKL II CA +++  LV+ +W++I
Sbjct: 1030 SKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQ-NRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAK--SSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDI 1224
The following BLAST results are available for this feature:
BLAST of TCONS_00070091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU1551.516e-4945.96Nuclear pore complex protein Nup155 OS=Homo sapien... [more]
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