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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070103 ID=TCONS_00070103|Name=TCONS_00070103|organism=Clytia hemisphaerica|type=transcript|length=2849bpRun BLAST on NCBI protein sequence of TCONS_00070103-protein >TCONS_00070103-protein ID=TCONS_00070103-protein|Name=TCONS_00070103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp LVSEGKTKTKMKNNDKDGKKENTEEQNGMSLNDKIIIVKMEEPDVNDETLRun BLAST on NCBI transcript from alignment at scaffold_513:323365..326420- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070103 ID=TCONS_00070103|Name=TCONS_00070103|organism=Clytia hemisphaerica|type=transcript|length=3056bp|location=Sequence derived from alignment at scaffold_513:323365..326420- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_513:323365..326420- >TCONS_00070103 ID=TCONS_00070103|Name=TCONS_00070103|organism=Clytia hemisphaerica|type=CDS|length=2850bp|location=Sequence derived from alignment at scaffold_513:323365..326420- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070103 vs. Swiss-Prot (Human)
Match: ZNF45 (Zinc finger protein 45 OS=Homo sapiens GN=ZNF45 PE=1 SV=2) HSP 1 Score: 298.13 bits (762), Expect = 9.082e-88 Identity = 154/349 (44.13%), Postives = 203/349 (58.17%), Query Frame = 1
Query: 364 RTEAEEKPYQCETCLKRFAYHWHWQRHLRSHNGEKPFKCDFCEKGFADSSTLTKHRRQHTGEKPFACQVCGKMFAQSSNLNKHLRVHSKSEKHSELKPYKCDLGDKNFPNISNIKTHERTCLGENPYKCNVCGQSFAQQDELLNHVRTTHFIATSSLNGEFLETPTETSQTLSIEKRYECNVCGKFLADDKNLRLHLRIHSGEKPYACQVCSKRFTQWNGLQSHLRTHDGLKPYNCDVCGKDFSTSSNYKRHCLIHIGAKLYSCEVCGNAFTNSGNLKVHMRMHTGERPYSCEICGKSFRQISGLQSHLRTHSGEKPFKCDVCGRSFADSSNMRQHRNLHSLSSSNKNY 1410
R EKPY+CE C K F+ H Q H SH GEKP+KC+ C KGF +S L H+R HTGEKP+ C CGK F++SS+ N H RVH+ KPYKC+ K F SN+ H+R GE PYKC CG+ F++ +L H R I T EK Y+C CGK + +L++H R+H+GEKPY C C K F+ + LQ+H R H G KPY C+ CGK F +SN+ H +H G K Y C+VCG F L+ H R+HTGERPY CE CGK F S LQ+H R H+GEKP+KC+ CG+ F+ SS++ H+ +H+ +K++
Sbjct: 352 RIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGE------KPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCR----IHTG-------------------EKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHTGEKPYKCEECGKGFSWSSSLIIHQRVHADDEGDKDF 671 HSP 2 Score: 292.352 bits (747), Expect = 9.349e-86 Identity = 149/344 (43.31%), Postives = 199/344 (57.85%), Query Frame = 1
Query: 355 PVIRTEAEEKPYQCETCLKRFAYHWHWQRHLRSHNGEKPFKCDFCEKGFADSSTLTKHRRQHTGEKPFACQVCGKMFAQSSNLNKHLRVHSKSEKHSELKPYKCDLGDKNFPNISNIKTHERTCLGENPYKCNVCGQSFAQQDELLNHVRTTHFIATSSLNGEFLETPTETSQTLSIEKRYECNVCGKFLADDKNLRLHLRIHSGEKPYACQVCSKRFTQWNGLQSHLRTHDGLKPYNCDVCGKDFSTSSNYKRHCLIHIGAKLYSCEVCGNAFTNSGNLKVHMRMHTGERPYSCEICGKSFRQISGLQSHLRTHSGEKPFKCDVCGRSFADSSNMRQHRNLHS 1386
P+I EKPY+CE C F+ + Q HL+ H G+KP+KC+ C K F+ S L H R HTGEKP+ C CGK F+ SS+LN H R+H+ KPYKC+ K F S+++ H+ + GE PYKC CG+ F + LL+H R + EK Y+C+ CGK + + +H R+H+GEKPY C+ C K F+Q + L +H R H G KPY C CGK FS SS+ HC IH G K Y CE CG AF+ +L+VH R+HTGE+PY C CGK F S LQ+H R H+GEKP++C+ CG+ F +SN HR +H+
Sbjct: 266 PLI-VHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGE------KPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGH-----------------------TGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHT 579 HSP 3 Score: 292.352 bits (747), Expect = 9.731e-86 Identity = 149/341 (43.70%), Postives = 192/341 (56.30%), Query Frame = 1
Query: 364 RTEAEEKPYQCETCLKRFAYHWHWQRHLRSHNGEKPFKCDFCEKGFADSSTLTKHRRQHTGEKPFACQVCGKMFAQSSNLNKHLRVHSKSEKHSELKPYKCDLGDKNFPNISNIKTHERTCLGENPYKCNVCGQSFAQQDELLNHVRTTHFIATSSLNGEFLETPTETSQTLSIEKRYECNVCGKFLADDKNLRLHLRIHSGEKPYACQVCSKRFTQWNGLQSHLRTHDGLKPYNCDVCGKDFSTSSNYKRHCLIHIGAKLYSCEVCGNAFTNSGNLKVHMRMHTGERPYSCEICGKSFRQISGLQSHLRTHSGEKPFKCDVCGRSFADSSNMRQHRNLHS 1386
R EKPY+C C K F+Y H H R H GEKP+KC+ C KGF+ S L H+ HTGEKP+ C+ CGK F ++SNL H R H+ KPY+CD K F S+ H R GE PYKC CG+ F+Q LL H R + EK Y+C CGK + +L +H RIH+GEKPY C+ C K F+Q++ LQ H R H G KPY C CGK FS S + H H G K Y CE CG F + N H +HTGE+PY C++CGK FRQ S LQ+H R H+GE+P+KC+ CG+ F+ SS ++ H+ +H+
Sbjct: 324 RIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGE------KPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGH-----------------------TGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHT 635 HSP 4 Score: 211.075 bits (536), Expect = 1.348e-57 Identity = 116/308 (37.66%), Postives = 171/308 (55.52%), Query Frame = 1
Query: 490 EKGFADSSTLTKHRRQHTGEKPFACQVCGKMFAQSSNLNKHLRVHSKSEKHSELKPYKCDLGDKNFPNISNIKTHERTCLGENPYKCNVCGQSFAQQDELLNHVRTTHFIATSSLNGEFLETPTETSQTL---------SIEKRYECNVCGKFLADDKNLRLHLRIHSGEKPYACQVCSKRFTQWNGLQSHLRTHDGLKPYNCDVCGKDFSTSSNYKRHCLIHIGAKLYSCEVCGNAFTNSGNLKVHMRMHTGERPYSCEICGKSFRQISGLQSHLRTHSGEKPFKCDVCGRSFADSSNMRQHRNLHS 1386
++GF++ S+ + R HTGEKP+ + C K F+ SS+L + R H+ KPYKC+ D F S+++ H+R Y + +SF+Q+ L +H R + T ++ E ++ + EK Y+C CG + L++HL++H+G+KPY C+ C K F+ + LQ+H R H G KPY C+ CGK FS SS+ HC IH G K Y CE CG F+ +L+ H HTGE+PY CE CGK F + S L H R H+GEKP++CD CG+ F+ SS+ H +H+
Sbjct: 142 DEGFSNQSSHLQVHRVHTGEKPYKGEHCVKSFSWSSHLQINQRAHAGE------KPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQR----VPTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHT 439 The following BLAST results are available for this feature:
BLAST of TCONS_00070103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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