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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070120 ID=TCONS_00070120|Name=TCONS_00070120|organism=Clytia hemisphaerica|type=transcript|length=2334bpRun BLAST on NCBI protein sequence of TCONS_00070120-protein >TCONS_00070120-protein ID=TCONS_00070120-protein|Name=TCONS_00070120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp QTNKMATEEDQFYWHTVYKISDLLSPREDSKSFNDDSKTEDTPNKRLTLLRun BLAST on NCBI transcript from alignment at scaffold_513:497925..533444- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070120 ID=TCONS_00070120|Name=TCONS_00070120|organism=Clytia hemisphaerica|type=transcript|length=35520bp|location=Sequence derived from alignment at scaffold_513:497925..533444- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_513:497925..533444- >TCONS_00070120 ID=TCONS_00070120|Name=TCONS_00070120|organism=Clytia hemisphaerica|type=CDS|length=15327bp|location=Sequence derived from alignment at scaffold_513:497925..533444- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070120 vs. Swiss-Prot (Human)
Match: NJMU (Protein Njmu-R1 OS=Homo sapiens GN=C17orf75 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.462e-23 Identity = 74/254 (29.13%), Postives = 130/254 (51.18%), Query Frame = 2
Query: 338 DYLICFLSASKSGLELFQTDLDKFSSKLIPHLEKYTESNDTNEYWKEF-EDWPKSVLSFVKECLATFDYDLATLLCAGFCGDTVIINDSVPKDVKKNLERFLQCCSLSALFSETKLESKASSPTSSLTDLISLQNPEKIHVELDSNGQYIVNPKKPSTFCNDCVKQ-LKVNQNIDMVHMRQMLENFKLKSIQDMNTFRRLLTQAEVDFYACYKTYLFLLTSGNGLVLMRNSRLQNNMDPTVKRQEVLDTLEQFI 1093
+Y++CFL S+ GLELF+ +LDK+ L ++ E+ + K + W + V+ ++ + F L LL A V + +S K K+++ RFL SL L E + +SL ++ + + + ++ S+ N + FC D ++ L + + RQ+LENFKLK+IQD N +R + QAE++ YA +K Y+FL G+G +L++ ++++ P K V+ LE+F+
Sbjct: 149 EYVVCFLGGSEKGLELFRLELDKYIQGLKNNMN--CEARGLESHIKSYLSSWFEDVVCPIQRVVLLFQEKLTFLLHAALSYTPVEVKESDEK-TKRDINRFLSVASLQGLIHEGTM--------TSLCMAMTEEQHKSVVIDCSSSQPQFCNAGS-NRFCEDWMQAFLNGAKGGNPFLFRQVLENFKLKAIQDTNNLKRFIRQAEMNHYALFKCYMFLKNCGSGDILLKIVKVEHEEMPEAKN--VIAVLEEFM 388 The following BLAST results are available for this feature:
BLAST of TCONS_00070120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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