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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070126 ID=TCONS_00070126|Name=TCONS_00070126|organism=Clytia hemisphaerica|type=transcript|length=1583bp
ggcttcttcgtaaaagcgaaagacatgtacctatttttcggatccggcat
gcgggaatagtgtcaggacctgcaggcgacctggtagggttgggtattgg
tgtggtttgggtgtgctTACGTATCAGATAGgctaggaatttggttatta
tcagttagggttagggttggagctcgaaaaaagcactcttttgtgatttt
ctcttaatacagtctggtctgtagtttgtacaatataaatagccgtcaga
aacgcTCTTTCttcatgaatccgtggcgcagtggataaggcattgggatt
caaaacatcggaactttgcatttagtgggttcgaatcccaccggtggcga
tctgtcggtaagtcattcagtaagttagaaaacagttgaaaaatgtaatt
ttttgaaCGAACTAACGTTTTTTTGCAACTGAcgttcaaaaagtaaaaat
caagaAGTTTTTCGCTAAATATTTGACGAATTTGCAGTTTAGTGCGCTCA
AATATGCATCAAAAGAAGAAGATTGTCACGCTGCTTCTCCTGGTATATTT
TTTGTCGCGCAGATCGGAAAATTCGCCCAACTNCTCACCGAAACCTGGCT
AAAAGACAATCCTTTCTTGCTTGATTATGTTAAAATTGAAGGTTACAAAC
TTTATTATCATAACCGAGACAACAGACGTGGTGGCGGTGTCGGCATATAC
ATCAAAGATGACATCAAGCATAAAATACGCAAAGATATCACCAACATCAA
CCCAGCCCTNATACATCAAAGATGACATCAAGCACAAAATACGCAAAGAT
ATCACCAACATCAACCCAGCCCTCGAACATCTATGGGTTGAAATTGAAGG
AAAAAACAAACATTCTAAACTACTCCTCAATGTTGCGTATCAACCGAACT
TCACGAACCAAGAAAAAGTGGATTGGCTTGAAAGCTTCGACAGAATCGTT
GGAACAGCTATTCTTGACTCGACGGGAAACGTGGTAATAACGGGTGATTT
TAATATCGATCTATTATCGAACTCTCAAATAAAAGATTCGTATCTCGAAA
CCCTTCGTTCGTTCGACCTCACCCAGCATGTAAAATCTCCATCACGTAAA
GGAGTGTCGCTCATTGACCACATTTCGACCAACTCGTCATGCAAAGTCAA
ATTCTGCGAAGTTCTACCAACACCAGAAATCAGTGATCATGATGCCGTGT
TTGCCTGCTTGAATACTCGTGTCGCCCGATTCGAACCACGGTACAAAGTA
ATACGTGACATGAGAAACTTCAACTTACCTACATACGTAGCTGATGCTTC
CACCCTACCGTTCAATCTCGTTTATGCAACCAATTGTACAGATGATAGTC
TATAAGCACACTCAATCATCTACTCTTTGAGTGCGTCGAACGCCACGCAC
CCTTAAAAAGAATCAGAGTCACTCGTCCGCAAGCACCCTGGATGAAAGAC
TTACAAATCAACGATCTACAGCAAAGCTGCCACGAGAAGCGCATTGCTGC
TCATCGAACTCAATCAGACTCCGACTGGAACGAATTTCGTGACGCTCGCA
ATGcattaaaaagaaagataaaacaCACTAAAA Run BLAST on NCBI protein sequence of TCONS_00070126-protein >TCONS_00070126-protein ID=TCONS_00070126-protein|Name=TCONS_00070126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MLKLKVTNFIIITETTDVVAVSAYTSKMTSSIKYAKISPTSTQPXYIKDD
IKHKIRKDITNINPALEHLWVEIEGKNKHSKLLLNVAYQPNFTNQEKVDW
LESFDRIVGTAILDSTGNVVITGDFNIDLLSNSQIKDSYLETLRSFDLTQ
HVKSPSRKGVSLIDHISTNSSCKVKFCEVLPTPEISDHDAVFACLNTRVA
RFEPRYKVIRDMRNFNLPTYVADASTLPFNLVYATNCTDDSL Run BLAST on NCBI transcript from alignment at scaffold_513:59858..61440 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070126 ID=TCONS_00070126|Name=TCONS_00070126|organism=Clytia hemisphaerica|type=transcript|length=1583bp|location=Sequence derived from alignment at scaffold_513:59858..61440 (Clytia hemisphaerica)
TTTTAGTGtgttttatctttctttttaatgCATTGCGAGCGTCACGAAAT
TCGTTCCAGTCGGAGTCTGATTGAGTTCGATGAGCAGCAATGCGCTTCTC
GTGGCAGCTTTGCTGTAGATCGTTGATTTGTAAGTCTTTCATCCAGGGTG
CTTGCGGACGAGTGACTCTGATTCTTTTTAAGGGTGCGTGGCGTTCGACG
CACTCAAAGAGTAGATGATTGAGTGTGCTTATAGACTATCATCTGTACAA
TTGGTTGCATAAACGAGATTGAACGGTAGGGTGGAAGCATCAGCTACGTA
TGTAGGTAAGTTGAAGTTTCTCATGTCACGTATTACTTTGTACCGTGGTT
CGAATCGGGCGACACGAGTATTCAAGCAGGCAAACACGGCATCATGATCA
CTGATTTCTGGTGTTGGTAGAACTTCGCAGAATTTGACTTTGCATGACGA
GTTGGTCGAAATGTGGTCAATGAGCGACACTCCTTTACGTGATGGAGATT
TTACATGCTGGGTGAGGTCGAACGAACGAAGGGTTTCGAGATACGAATCT
TTTATTTGAGAGTTCGATAATAGATCGATATTAAAATCACCCGTTATTAC
CACGTTTCCCGTCGAGTCAAGAATAGCTGTTCCAACGATTCTGTCGAAGC
TTTCAAGCCAATCCACTTTTTCTTGGTTCGTGAAGTTCGGTTGATACGCA
ACATTGAGGAGTAGTTTAGAATGTTTGTTTTTTCCTTCAATTTCAACCCA
TAGATGTTCGAGGGCTGGGTTGATGTTGGTGATATCTTTGCGTATTTTGT
GCTTGATGTCATCTTTGATGTATNAGGGCTGGGTTGATGTTGGTGATATC
TTTGCGTATTTTATGCTTGATGTCATCTTTGATGTATATGCCGACACCGC
CACCACGTCTGTTGTCTCGGTTATGATAATAAAGTTTGTAACCTTCAATT
TTAACATAATCAAGCAAGAAAGGATTGTCTTTTAGCCAGGTTTCGGTGAG
NAGTTGGGCGAATTTTCCGATCTGCGCGACAAAAAATATACCAGGAGAAG
CAGCGTGACAATCTTCTTCTTTTGATGCATATTTGAGCGCACTAAACTGC
AAATTCGTCAAATATTTAGCGAAAAACTtcttgatttttactttttgaac
gTCAGTTGCAAAAAAACGTTAGTTCGttcaaaaaattacatttttcaact
gttttctaacttactgaatgacttaccgacagatcgccaccggtgggatt
cgaacccactaaatgcaaagttccgatgttttgaatcccaatgccttatc
cactgcgccacggattcatgaaGAAAGAgcgtttctgacggctatttata
ttgtacaaactacagaccagactgtattaagagaaaatcacaaaagagtg
cttttttcgagctccaaccctaaccctaactgataataaccaaattccta
gcCTATCTGATACGTAagcacacccaaaccacaccaatacccaaccctac
caggtcgcctgcaggtcctgacactattcccgcatgccggatccgaaaaa
taggtacatgtctttcgcttttacgaagaagcc Coding sequence (CDS) from alignment at scaffold_513:59858..61440 >TCONS_00070126 ID=TCONS_00070126|Name=TCONS_00070126|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_513:59858..61440 (Clytia hemisphaerica)
TTATAGACTATCATCTGTACAATTGGTTGCATAAACGAGATTGAACGGTA
GGGTGGAAGCATCAGCTACGTATGTAGGTAAGTTGAAGTTTCTCATGTCA
CGTATTACTTTGTACCGTGGTTCGAATCGGGCGACACGAGTATTCAAGCA
GGCAAACACGGCATCATGATCACTGATTTCTGGTGTTGGTAGAACTTCGC
AGAATTTGACTTTGCATGACGAGTTGGTCGAAATGTGGTCAATGAGCGAC
ACTCCTTTACGTGATGGAGATTTTACATGCTGGGTGAGGTCGAACGAACG
AAGGGTTTCGAGATACGAATCTTTTATTTGAGAGTTCGATAATAGATCGA
TATTAAAATCACCCGTTATTACCACGTTTCCCGTCGAGTCAAGAATAGCT
GTTCCAACGATTCTGTCGAAGCTTTCAAGCCAATCCACTTTTTCTTGGTT
CGTGAAGTTCGGTTGATACGCAACATTGAGGAGTAGTTTAGAATGTTTGT
TTTTTCCTTCAATTTCAACCCATAGATGTTCGAGGGCTGGGTTGATGTTG
GTGATATCTTTGCGTATTTTGTGCTTGATGTCATCTTTGATGTATNAGGG
CTGGGTTGATGTTGGTGATATCTTTGCGTATTTTATGCTTGATGTCATCT
TTGATGTATATGCCGACACCGCCACCACGTCTGTTGTCTCGGTTATGATA
ATAAAGTTTGTAACCTTCAATTTTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070126-exon-scaffold_513-1491911889:59858..61440 | TCONS_00070126-exon-scaffold_513-1491911889:59858..61440 | Clytia hemisphaerica | exon |
| TCONS_00070126-exon-scaffold_513-1510915933:59858..61440 | TCONS_00070126-exon-scaffold_513-1510915933:59858..61440 | Clytia hemisphaerica | exon |
| TCONS_00070126-exon-scaffold_513-1575043694:59858..61440 | TCONS_00070126-exon-scaffold_513-1575043694:59858..61440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:59858..61440 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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