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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070131 ID=TCONS_00070131|Name=TCONS_00070131|organism=Clytia hemisphaerica|type=transcript|length=1747bp
CACCATTCGATGGCACCAAGTCACAGGTTCTCCGATGGGTACTTTTTCGA
GGACACCAAGCAGTACATCCCGGTCCAGGTCAGCCTTGACTTTTTCTTGC
CAGTGGAATGGCACGGGGATTGGAGAGTGATGAGCGATAGGTTCTGCTGA
CTCATCAATCTGGAGTGAGAGCGGGGGTCCAGTCATCATTGGTAGAGGTT
GGTGCTCACACGTGTTGAAGGTGCTGGACTTGTAGTGATCTAGCAGGTAG
TCCTGTAACTTCTGGCGACTCTCGTCTGTTGCAGGGCATGGATGATGATT
GGGAAGTGCAGGTGGTGGTTCAAGTCTTGGGCAGTCACAATCCACGGTCA
CTGGCGTTGAAGATTGCTCAGGGTGGTTTAGAAAATCTGTTGTCAACTTC
AGAACGTCTGTCGATGCCACCTCGTGATATTTGTTGGCAATGGCTGGAAA
GTTGTTAGGGATAATTCCCAAGTCAATGCAGGCTGCTTTGCTGATGAAGA
ACTGGTTGGTTTCGTTAGTGACGTATACCAGTTGCCTTGTCTCCAACGTG
TCAGTATANGGATGGCGATGGTCTTCTCTGGGTGGTTCTTGATTGGTTCG
TAGCCAAGTTGACCATAGCTGTCATCATCTATCATAATCGTGACATCCAG
GTACGGTTGGGAGCTGGACCGACGTTTCTCCCACTTCTTAGAGGATTTGT
TGTAGACGTGGTGACTTGCTGGCTTTTTCGATTGTCGTATTGCACATAGC
TCGTTGAAGGTTGCCTCTTGATCTTGGTTGTCGAAGACTGCACCTTGACT
TTCCGGTTCAGGCTTCTTTGGTTTTGCTGGCTTGTCTTTACTCCTGCATA
CGTTCTCGAAGTGGTGAGGGCGATTGCAATGAGCACAGATATGGTTGTAT
GCTGGGCAGGTTGTTTTCCGCTGCTTGGCAGTTGATTTGGAACCATGACC
CTTTTTTTCCACAGTAGGTGCATATGATCGGATCGGTTGCTCTGCTTTTT
CTGTAAGTGCTGCGTATGCcattgttttcatgctgttgaaggaGTTTTGT
TGCAGAGCGTTTCCCACTTTCTCTAGCctcaataaagtggaggaccTCGT
CCAGAGTCATATCTTGGTTCGTTTGACCCAGTAAGTCCAGTTGGATATCA
GAGTCCTCAATCCCTCTAATTATAACGTCTCTGAGAATTGGCTCTGTGTA
ATCAACTTTATGGTCGCAGTCAGGGCAATCTATCGAGTATTTGCAGACAT
TGGCTTGACCTCTTAGGCGAGCACAGAAGGATCGAATCGGTTCATCACGG
TCTTGAGTAGAGTTGTTAAGTTGGACTCTTGCAATCATTGTGTTTTCATC
CCTTACAGCTAATGACTTTATAGCTGCAAGTACGTCCTCTTCTGATTTGG
TAGACAAACTTCCAACAGTGGATCTGGTAAGATCCTTTCGTAGTTCATCA
TTACAACACTCTAACAATTGTAGGACTTTCTCCTTTCCGGTGACTTTAGT
TGCAGCAACGTATTCAGTCCATCTGGTGGTGAAATACTGCCATTCTTCGC
TTGTGCCGGCTGATGAGATTGTTGGCCTCTTGACTCTCTCCACTTTAGCA
GCACTCTGTTGATTGGGTGAGCCGGTGTGGGTAGCATTGGCATGAGCCGT
GATGAGGGCTGCAACAATCGTGGCATCTAGGTCAGGGGTGACGTAATCAC
AAGATTCGATTGGGCACTCTACAGCAGGCATCTTTGTTGAGCAACCA Run BLAST on NCBI protein sequence of TCONS_00070131-protein >TCONS_00070131-protein ID=TCONS_00070131-protein|Name=TCONS_00070131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
GCSTKMPAVECPIESCDYVTPDLDATIVAALITAHANATHTGSPNQQSAA
KVERVKRPTISSAGTSEEWQYFTTRWTEYVAATKVTGKEKVLQLLECCND
ELRKDLTRSTVGSLSTKSEEDVLAAIKSLAVRDENTMIARVQLNNSTQDR
DEPIRSFCARLRGQANVCKYSIDCPDCDHKVDYTEPILRDVIIRGIEDSD
IQLDLLGQTNQDMTLDEVLHFIEARESGKRSATKLLQQHENNGIRSTYRK
SRATDPIICTYCGKKGSWFQINCQAAENNLPSIQPYLCSLQSPSPLRERM
QE Run BLAST on NCBI transcript from alignment at scaffold_513:164942..166688 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070131 ID=TCONS_00070131|Name=TCONS_00070131|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at scaffold_513:164942..166688 (Clytia hemisphaerica)
TGGTTGCTCAACAAAGATGCCTGCTGTAGAGTGCCCAATCGAATCTTGTG
ATTACGTCACCCCTGACCTAGATGCCACGATTGTTGCAGCCCTCATCACG
GCTCATGCCAATGCTACCCACACCGGCTCACCCAATCAACAGAGTGCTGC
TAAAGTGGAGAGAGTCAAGAGGCCAACAATCTCATCAGCCGGCACAAGCG
AAGAATGGCAGTATTTCACCACCAGATGGACTGAATACGTTGCTGCAACT
AAAGTCACCGGAAAGGAGAAAGTCCTACAATTGTTAGAGTGTTGTAATGA
TGAACTACGAAAGGATCTTACCAGATCCACTGTTGGAAGTTTGTCTACCA
AATCAGAAGAGGACGTACTTGCAGCTATAAAGTCATTAGCTGTAAGGGAT
GAAAACACAATGATTGCAAGAGTCCAACTTAACAACTCTACTCAAGACCG
TGATGAACCGATTCGATCCTTCTGTGCTCGCCTAAGAGGTCAAGCCAATG
TCTGCAAATACTCGATAGATTGCCCTGACTGCGACCATAAAGTTGATTAC
ACAGAGCCAATTCTCAGAGACGTTATAATTAGAGGGATTGAGGACTCTGA
TATCCAACTGGACTTACTGGGTCAAACGAACCAAGATATGACTCTGGACG
AggtcctccactttattgagGCTAGAGAAAGTGGGAAACGCTCTGCAACA
AAACtccttcaacagcatgaaaacaatgGCATACGCAGCACTTACAGAAA
AAGCAGAGCAACCGATCCGATCATATGCACCTACTGTGGAAAAAAAGGGT
CATGGTTCCAAATCAACTGCCAAGCAGCGGAAAACAACCTGCCCAGCATA
CAACCATATCTGTGCTCATTGCAATCGCCCTCACCACTTCGAGAACGTAT
GCAGGAGTAAAGACAAGCCAGCAAAACCAAAGAAGCCTGAACCGGAAAGT
CAAGGTGCAGTCTTCGACAACCAAGATCAAGAGGCAACCTTCAACGAGCT
ATGTGCAATACGACAATCGAAAAAGCCAGCAAGTCACCACGTCTACAACA
AATCCTCTAAGAAGTGGGAGAAACGTCGGTCCAGCTCCCAACCGTACCTG
GATGTCACGATTATGATAGATGATGACAGCTATGGTCAACTTGGCTACGA
ACCAATCAAGAACCACCCAGAGAAGACCATCGCCATCCNTATACTGACAC
GTTGGAGACAAGGCAACTGGTATACGTCACTAACGAAACCAACCAGTTCT
TCATCAGCAAAGCAGCCTGCATTGACTTGGGAATTATCCCTAACAACTTT
CCAGCCATTGCCAACAAATATCACGAGGTGGCATCGACAGACGTTCTGAA
GTTGACAACAGATTTTCTAAACCACCCTGAGCAATCTTCAACGCCAGTGA
CCGTGGATTGTGACTGCCCAAGACTTGAACCACCACCTGCACTTCCCAAT
CATCATCCATGCCCTGCAACAGACGAGAGTCGCCAGAAGTTACAGGACTA
CCTGCTAGATCACTACAAGTCCAGCACCTTCAACACGTGTGAGCACCAAC
CTCTACCAATGATGACTGGACCCCCGCTCTCACTCCAGATTGATGAGTCA
GCAGAACCTATCGCTCATCACTCTCCAATCCCCGTGCCATTCCACTGGCA
AGAAAAAGTCAAGGCTGACCTGGACCGGGATGTACTGCTTGGTGTCCTCG
AAAAAGTACCCATCGGAGAACCTGTGACTTGGTGCCATCGAATGGTG Coding sequence (CDS) from alignment at scaffold_513:164942..166688 >TCONS_00070131 ID=TCONS_00070131|Name=TCONS_00070131|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_513:164942..166688 (Clytia hemisphaerica)
GGTTGCTCAACAAAGATGCCTGCTGTAGAGTGCCCAATCGAATCTTGTGA
TTACGTCACCCCTGACCTAGATGCCACGATTGTTGCAGCCCTCATCACGG
CTCATGCCAATGCTACCCACACCGGCTCACCCAATCAACAGAGTGCTGCT
AAAGTGGAGAGAGTCAAGAGGCCAACAATCTCATCAGCCGGCACAAGCGA
AGAATGGCAGTATTTCACCACCAGATGGACTGAATACGTTGCTGCAACTA
AAGTCACCGGAAAGGAGAAAGTCCTACAATTGTTAGAGTGTTGTAATGAT
GAACTACGAAAGGATCTTACCAGATCCACTGTTGGAAGTTTGTCTACCAA
ATCAGAAGAGGACGTACTTGCAGCTATAAAGTCATTAGCTGTAAGGGATG
AAAACACAATGATTGCAAGAGTCCAACTTAACAACTCTACTCAAGACCGT
GATGAACCGATTCGATCCTTCTGTGCTCGCCTAAGAGGTCAAGCCAATGT
CTGCAAATACTCGATAGATTGCCCTGACTGCGACCATAAAGTTGATTACA
CAGAGCCAATTCTCAGAGACGTTATAATTAGAGGGATTGAGGACTCTGAT
ATCCAACTGGACTTACTGGGTCAAACGAACCAAGATATGACTCTGGACGA
ggtcctccactttattgagGCTAGAGAAAGTGGGAAACGCTCTGCAACAA
AACtccttcaacagcatgaaaacaatgGCATACGCAGCACTTACAGAAAA
AGCAGAGCAACCGATCCGATCATATGCACCTACTGTGGAAAAAAAGGGTC
ATGGTTCCAAATCAACTGCCAAGCAGCGGAAAACAACCTGCCCAGCATAC
AACCATATCTGTGCTCATTGCAATCGCCCTCACCACTTCGAGAACGTATG
CAGGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070131-exon-scaffold_513-1491911889:164942..166688 | TCONS_00070131-exon-scaffold_513-1491911889:164942..166688 | Clytia hemisphaerica | exon |
| TCONS_00070131-exon-scaffold_513-1510915933:164942..166688 | TCONS_00070131-exon-scaffold_513-1510915933:164942..166688 | Clytia hemisphaerica | exon |
| TCONS_00070131-exon-scaffold_513-1575043694:164942..166688 | TCONS_00070131-exon-scaffold_513-1575043694:164942..166688 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:164942..166688 . |
Blast
The following BLAST results are available for this feature:
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