|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070132 ID=TCONS_00070132|Name=TCONS_00070132|organism=Clytia hemisphaerica|type=transcript|length=1119bp
gtcaaaaataaacTTAGCCTTGATGAATTACCTGCTGAATTCCGTACTCT
TCGtagacttgaaaaaaatttgatttctcgcagaatattattcaaaaaaa
ttgcaatCATGCCAAAAGGTCAGTTCCCCAAACTCAAAGGTTCTATTTGT
AATGTACCTATTTATGTTGAAGATATTGCTAATACTTTACCAAGAAGAGC
AGATGATAATGGATTAGTCATTGTTAAACTCAAAAGGAAATTGGAATATA
AAGGACATGTCGTTTTTGAACCAATCAGACCTGATTTCATTCAGCGCGTA
CTGAATTATTTCAAAGAGAACAACCCTCTTTATCAAGACATAGAAATGTC
AGCAATATTTCAATTGATGAGACCATTATACAAAATTCTGCAAATAATGA
GGAAACAAACTCCAATGAAAGTGACCAAGTGAAATTGCTTCCAATGACGA
TAGCACTGAACCTGATGATCCACAAAATAATGCTTCAGATTCTGAAGAGC
TTGAGACAACCGACAACCCACTTGATGCTCATCGCTCAAATGCAAATGAA
ACTACTCTAATGCCTCACACTCCTTCTGATTCAGAAGTAGATCATGAAAT
TTTGTCATTAGCGCCTGGTCAgggtaaaaaaacaatttcagtcTTACATg
atgaaaattgtgaaatgCTTGCTCATCCTCGTTTATTTCCTAAAGGTAAA
TTTGGTTACAAAGTTGAACGTGATGTTAAACTAAGTCCATCCAAATACTT
CAACCAGCGTTTGTTGAACTACACACAAAAGTTTGCTTCAGACCCAGACT
ACatatttttgctaattttgtaACTCAGCAAGTGTCTTTGACCAATCAGA
TAAATGTTGCAATGAGAAAAGTTGCTGGCTCAAATTTAAATGCTGGTATG
TTAAGTCAGAATTTCAAATAAACAGTAAGGCAATTCATAGCAAATGATAA
AGCTTTTGCCTTCATGAGTACTGTTAAAGGAACTCCAGCATATTGGAAAA
AATTCCAGCAAGAAGTTTTAGCAATGGTTAAACAATTAGTACCACCAACG
TTCTTTCAGACATTGAGTTGTGCAGACCTTCGTTGGAACGAACTCATCTC
CATAATTTACAAACTCAAG Run BLAST on NCBI protein sequence of TCONS_00070132-protein >TCONS_00070132-protein ID=TCONS_00070132-protein|Name=TCONS_00070132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
VKNKLSLDELPAEFRTLRRLEKNLISRRILFKKIAIMPKGQFPKLKGSIC
NVPIYVEDIANTLPRRADDNGLVIVKLKRKLEYKGHVVFEPIRPDFIQRV
LNYFKENNPLYQDIEMSAIFQLMRPLYKILQIMRKQTPMKVTK Run BLAST on NCBI transcript from alignment at scaffold_513:171381..172499 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070132 ID=TCONS_00070132|Name=TCONS_00070132|organism=Clytia hemisphaerica|type=transcript|length=1119bp|location=Sequence derived from alignment at scaffold_513:171381..172499 (Clytia hemisphaerica)
CTTGAGTTTGTAAATTATGGAGATGAGTTCGTTCCAACGAAGGTCTGCAC
AACTCAATGTCTGAAAGAACGTTGGTGGTACTAATTGTTTAACCATTGCT
AAAACTTCTTGCTGGAATTTTTTCCAATATGCTGGAGTTCCTTTAACAGT
ACTCATGAAGGCAAAAGCTTTATCATTTGCTATGAATTGCCTTACTGTTT
ATTTGAAATTCTGACTTAACATACCAGCATTTAAATTTGAGCCAGCAACT
TTTCTCATTGCAACATTTATCTGATTGGTCAAAGACACTTGCTGAGTtac
aaaattagcaaaaatatGTAGTCTGGGTCTGAAGCAAACTTTTGTGTGTA
GTTCAACAAACGCTGGTTGAAGTATTTGGATGGACTTAGTTTAACATCAC
GTTCAACTTTGTAACCAAATTTACCTTTAGGAAATAAACGAGGATGAGCA
AGcatttcacaattttcatcATGTAAgactgaaattgtttttttacccTG
ACCAGGCGCTAATGACAAAATTTCATGATCTACTTCTGAATCAGAAGGAG
TGTGAGGCATTAGAGTAGTTTCATTTGCATTTGAGCGATGAGCATCAAGT
GGGTTGTCGGTTGTCTCAAGCTCTTCAGAATCTGAAGCATTATTTTGTGG
ATCATCAGGTTCAGTGCTATCGTCATTGGAAGCAATTTCACTTGGTCACT
TTCATTGGAGTTTGTTTCCTCATTATTTGCAGAATTTTGTATAATGGTCT
CATCAATTGAAATATTGCTGACATTTCTATGTCTTGATAAAGAGGGTTGT
TCTCTTTGAAATAATTCAGTACGCGCTGAATGAAATCAGGTCTGATTGGT
TCAAAAACGACATGTCCTTTATATTCCAATTTCCTTTTGAGTTTAACAAT
GACTAATCCATTATCATCTGCTCTTCTTGGTAAAGTATTAGCAATATCTT
CAACATAAATAGGTACATTACAAATAGAACCTTTGAGTTTGGGGAACTGA
CCTTTTGGCATGattgcaatttttttgaataatattctgcgagaaatcaa
atttttttcaagtctaCGAAGAGTACGGAATTCAGCAGGTAATTCATCAA
GGCTAAgtttatttttgac Coding sequence (CDS) from alignment at scaffold_513:171381..172499 >TCONS_00070132 ID=TCONS_00070132|Name=TCONS_00070132|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_513:171381..172499 (Clytia hemisphaerica)
TCACTTGGTCACTTTCATTGGAGTTTGTTTCCTCATTATTTGCAGAATTT
TGTATAATGGTCTCATCAATTGAAATATTGCTGACATTTCTATGTCTTGA
TAAAGAGGGTTGTTCTCTTTGAAATAATTCAGTACGCGCTGAATGAAATC
AGGTCTGATTGGTTCAAAAACGACATGTCCTTTATATTCCAATTTCCTTT
TGAGTTTAACAATGACTAATCCATTATCATCTGCTCTTCTTGGTAAAGTA
TTAGCAATATCTTCAACATAAATAGGTACATTACAAATAGAACCTTTGAG
TTTGGGGAACTGACCTTTTGGCATGattgcaatttttttgaataatattc
tgcgagaaatcaaatttttttcaagtctaCGAAGAGTACGGAATTCAGCA
GGTAATTCATCAAGGCTAAgtttatttttgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070132-exon-scaffold_513-1491911889:171381..172499 | TCONS_00070132-exon-scaffold_513-1491911889:171381..172499 | Clytia hemisphaerica | exon |
| TCONS_00070132-exon-scaffold_513-1510915933:171381..172499 | TCONS_00070132-exon-scaffold_513-1510915933:171381..172499 | Clytia hemisphaerica | exon |
| TCONS_00070132-exon-scaffold_513-1575043694:171381..172499 | TCONS_00070132-exon-scaffold_513-1575043694:171381..172499 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:171381..172499 . |
Blast
The following BLAST results are available for this feature:
|
