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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070133 ID=TCONS_00070133|Name=TCONS_00070133|organism=Clytia hemisphaerica|type=transcript|length=1318bp
ATGAtttatttcaaagtttattATTGATTCTTTgtcaaagttattttcaa
aaaagatagcaGCAAGTGTACACTGGTACATCTACCTCACTTGCAAGTTA
TCCAAAAGATAGCATTAAGCTTGTCTGTGATATATATCAGACAAGCAGCT
ACACCCTTGAGGTTGCATGCGAGTTCCTTGCATCCTCTTGCTTATCTTAC
TTAACCTACGAAGCTTACTTAACCTACTGAACTACTTGTCAAACTTGAAT
AACCTGCAAAACCTACTAAACGTTCAAAACCTACCAAACGTTCAAAACGT
GCGAAACCTGCTAATTGTTCAAAACTTGCAAAGTCCATCAAACACTTGCT
TCCTTTACTTCACACATCCTAATCTCAGCTTACAAATCTCAGCATTTAAG
CTTATAAATCTCAGCTTCTCAGCTTACACGTCTCAGCGTCAGATTTTAGC
CTTATTAACTTATACTCCCTGCAAAACAAAACTCTTATTTCTCCAGTCAA
ATCTGAAAAATATGTTGCGTAcgcaaatttatcaaatttcaaaagctgtT
TTGGGCTCATTTAATCAAGCCAACGAGGAATTATTTGGCCAAACTGCTGG
CACTCAATGTAGCGTTAACTGCCTGTATGCTATCTTTTGGTCTGATTTTC
GACGCGTTAATCTTTGGAAGACTACCGACCATGACAAAATCTTGATCGAA
GGTGATAAGTTATACAAACAGCTTGATACAAACTTCCATCTTTCGGTTGA
TGAAATGCCGCGTTTCATTGAATCAAATGGTGTCATaactaattttaatt
ttttgaattttgcaaaCGGCGAAGCGAACCTGATTAATGATTGTCCTTTC
CTTCAAATCCCTCTGAGTGAATCCGAAATAtatccaatttttttatttac
gaCAGATGGAAAAAGAGAGTACTTACTTTGACATTCAATTTATTGAAGTG
GATGAACTAACAGAAGAGCTTAAAGAAATTCTACAAAGGGACATTTCAGT
ATTcatgaaaaattattcaaataagAAGCGTAACAGTGATGCCAGTGATG
GAAACAATTCTAAGcgtcaaaaaattaaacaaaagtattacaaaaagaac
aaagaaacaaTGATTGAAAACAGCAAAACCTATCGttcccaaaacaaaac
aaaattaaatgaacaaaaaaaggattatcgttcccaaaacaaagaaaaat
taaacgaacaaaaaaaagattatcgttcccaaaacaaagaaaaattaaac
gaacaaaaaaaagattatCGCTCCCGAAACAAAGAGAAATtaactgaaaa
acaaaaaaaaatattttt Run BLAST on NCBI protein sequence of TCONS_00070133-protein >TCONS_00070133-protein ID=TCONS_00070133-protein|Name=TCONS_00070133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MRVPCILLLILLNLRSLLNLLNYLSNLNNLQNLLNVQNLPNVQNVRNLLI
VQNLQSPSNTCFLYFTHPNLSLQISAFKLINLSFSAYTSQRQILALLTYT
PCKTKLLFLQSNLKNMLRTQIYQISKAVLGSFNQANEELFGQTAGTQCSV
NCLYAIFWSDFRRVNLWKTTDHDKILIEGDKLYKQLDTNFHLSVDEMPRF
IESNGVITNFNFLNFANGEANLINDCPFLQIPLSESEIYPIFLFTTDGKR
EYLL Run BLAST on NCBI transcript from alignment at scaffold_513:172847..174164 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070133 ID=TCONS_00070133|Name=TCONS_00070133|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at scaffold_513:172847..174164 (Clytia hemisphaerica)
aaaaatatttttttttgtttttcagttaATTTCTCTTTGTTTCGGGAGCG
ataatcttttttttgttcgtttaatttttctttgttttgggaacgataat
cttttttttgttcgtttaatttttctttgttttgggaacgataatccttt
ttttgttcatttaattttgttttgttttgggaaCGATAGGTTTTGCTGTT
TTCAATCAttgtttctttgttctttttgtaatacttttgtttaatttttt
gacgCTTAGAATTGTTTCCATCACTGGCATCACTGTTACGCTTcttattt
gaataatttttcatgAATACTGAAATGTCCCTTTGTAGAATTTCTTTAAG
CTCTTCTGTTAGTTCATCCACTTCAATAAATTGAATGTCAAAGTAAGTAC
TCTCTTTTTCCATCTGtcgtaaataaaaaaattggataTATTTCGGATTC
ACTCAGAGGGATTTGAAGGAAAGGACAATCATTAATCAGGTTCGCTTCGC
CGtttgcaaaattcaaaaaattaaaattagttATGACACCATTTGATTCA
ATGAAACGCGGCATTTCATCAACCGAAAGATGGAAGTTTGTATCAAGCTG
TTTGTATAACTTATCACCTTCGATCAAGATTTTGTCATGGTCGGTAGTCT
TCCAAAGATTAACGCGTCGAAAATCAGACCAAAAGATAGCATACAGGCAG
TTAACGCTACATTGAGTGCCAGCAGTTTGGCCAAATAATTCCTCGTTGGC
TTGATTAAATGAGCCCAAAacagcttttgaaatttgataaatttgcgTAC
GCAACATATTTTTCAGATTTGACTGGAGAAATAAGAGTTTTGTTTTGCAG
GGAGTATAAGTTAATAAGGCTAAAATCTGACGCTGAGACGTGTAAGCTGA
GAAGCTGAGATTTATAAGCTTAAATGCTGAGATTTGTAAGCTGAGATTAG
GATGTGTGAAGTAAAGGAAGCAAGTGTTTGATGGACTTTGCAAGTTTTGA
ACAATTAGCAGGTTTCGCACGTTTTGAACGTTTGGTAGGTTTTGAACGTT
TAGTAGGTTTTGCAGGTTATTCAAGTTTGACAAGTAGTTCAGTAGGTTAA
GTAAGCTTCGTAGGTTAAGTAAGATAAGCAAGAGGATGCAAGGAACTCGC
ATGCAACCTCAAGGGTGTAGCTGCTTGTCTGATATATATCACAGACAAGC
TTAATGCTATCTTTTGGATAACTTGCAAGTGAGGTAGATGTACCAGTGTA
CACTTGCtgctatcttttttgaaaataactttgacAAAGAATCAATaata
aactttgaaataaaTCAT Coding sequence (CDS) from alignment at scaffold_513:172847..174164 >TCONS_00070133 ID=TCONS_00070133|Name=TCONS_00070133|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_513:172847..174164 (Clytia hemisphaerica)
TCAAAGTAAGTACTCTCTTTTTCCATCTGtcgtaaataaaaaaattggat
aTATTTCGGATTCACTCAGAGGGATTTGAAGGAAAGGACAATCATTAATC
AGGTTCGCTTCGCCGtttgcaaaattcaaaaaattaaaattagttATGAC
ACCATTTGATTCAATGAAACGCGGCATTTCATCAACCGAAAGATGGAAGT
TTGTATCAAGCTGTTTGTATAACTTATCACCTTCGATCAAGATTTTGTCA
TGGTCGGTAGTCTTCCAAAGATTAACGCGTCGAAAATCAGACCAAAAGAT
AGCATACAGGCAGTTAACGCTACATTGAGTGCCAGCAGTTTGGCCAAATA
ATTCCTCGTTGGCTTGATTAAATGAGCCCAAAacagcttttgaaatttga
taaatttgcgTACGCAACATATTTTTCAGATTTGACTGGAGAAATAAGAG
TTTTGTTTTGCAGGGAGTATAAGTTAATAAGGCTAAAATCTGACGCTGAG
ACGTGTAAGCTGAGAAGCTGAGATTTATAAGCTTAAATGCTGAGATTTGT
AAGCTGAGATTAGGATGTGTGAAGTAAAGGAAGCAAGTGTTTGATGGACT
TTGCAAGTTTTGAACAATTAGCAGGTTTCGCACGTTTTGAACGTTTGGTA
GGTTTTGAACGTTTAGTAGGTTTTGCAGGTTATTCAAGTTTGACAAGTAG
TTCAGTAGGTTAAGTAAGCTTCGTAGGTTAAGTAAGATAAGCAAGAGGAT
GCAAGGAACTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070133-exon-scaffold_513-1491911889:172847..174164 | TCONS_00070133-exon-scaffold_513-1491911889:172847..174164 | Clytia hemisphaerica | exon |
| TCONS_00070133-exon-scaffold_513-1510915933:172847..174164 | TCONS_00070133-exon-scaffold_513-1510915933:172847..174164 | Clytia hemisphaerica | exon |
| TCONS_00070133-exon-scaffold_513-1575043694:172847..174164 | TCONS_00070133-exon-scaffold_513-1575043694:172847..174164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:172847..174164 . |
Blast
The following BLAST results are available for this feature:
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