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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070139 ID=TCONS_00070139|Name=TCONS_00070139|organism=Clytia hemisphaerica|type=transcript|length=2094bp
ggtgtggtaAAATTTCGTTTTTTTCTACATCAATTTGAAATTTTAACaag
atgattgctgtttatttgagtaactagtgaaatgtgtcaaaaatattact
attcaatagaggtgagaataaacatcagctgaattctctcttttttcttt
gttttttttccgaaagagacaattatttgagtaaataatccatcataaga
cgaactttgttttgtaatttaaatggttataactctggatcaaaaaaaga
ttttaagatcgctattttaccaaaatgaaatccagtaacttttcttccac
tttgactgaaaaaaagttttttgacaaaaaatcggaaaaaaggtgtacac
ataccttaaagagaaaaatagaattcgttttaaagaaaagaaacaaaaag
accAAAGTAATTCAGACAGTActaaaagagtttaaagatTTCAGGAAAGT
ATTAAAGATGGGCCATTTTAAGTATGTGTCATCGGTGTCTTTATAAGAGA
TCATTTATCTATTTCAAGAAAGAAAAGTACACAAAAAATGGATTTGATCC
TCAGTGCAATCCTATTCCAAGCTTTGATAACTTATTTTATATTTGCAAAA
CTTGCGATAAAACCTTACTAAAGCAAGAAATTCCATGTCAAAGTGTAAGC
AACAAACTTGAATTGTACGACTTGCCAGAGCATTTGAAAAACATTAATAA
AATGGAACGTGCAGTTATATCACAGCgtattttgttttctaaaatcaaGA
TAATGCCAAAAGGTCAGTTTCCAAAAATGATCGTTTGCAATATACCGGTT
GAAACCGAAGAAGTCTGTAATGTTTTACCGAGAACTCTCAATGAATCTAA
CgtaatttttatgaagttgaaacGAAAATTGTGTTATAATGGTTCATGTA
TTATCTGAAGCCGTCAGACCAGAAgttgttttttccattttgaatcACCT
CAAAACAGTCAATCCATTATATCAGCACATTAATATTCAAGAAATATTAT
CCGAAAATGCTTTTGACGTAAGATTTGTTGATGATGAAGATGTTGATTTT
TCTATAGTTGATGATGAAACAGTGGAGTCCTCTGTAGAAGTATTAGTGAA
ATTTATTGATGATAGGGATGTTCAAAAAATTAGTAATTTTGAAGAAcatg
atgaatttgaaaatgaagatccAATGGATCAGCATCGATTAGCTTGTGTT
GAAACTACTCTAATTTCAATATGTCCCCATTCTATTGTTGACGATGAAAA
CATAGTAGTAGGTCCTGGTGAAGGAAAAGCCCCTTTGAATATTCTGAAGG
ACCCAAATGTTGAAATCTTGGCTTTTCCTGATTTATTCCCACATGGAAAA
TTTGGCTTAACTGCCTATCGAGATGGCAGGTTCACtcatacaaaatattt
taatcaaCGGTTGTTGAATTATACACAAAGATTCACCTCAGATGCCGATT
AAATTTTTTATGCAAACTTTGTTTCTCAACAAACCaatttataaaatcaa
ataataaaatcaatgTGGCAATGCGGAAAGTGTCCGGGAGAAATATCAGT
GCAGGTATGCTAAGTAAcaacggctagttcgaaacacgggtcacagggca
cggggcacggggcatacaaattacagaccggaaaaaatataacgatatca
tgacgtataattcataacacgtactacataacacatatgatagtactaat
actactagtatagtatgtctgaaacaattatatgcgaatagtattatcat
gaaaatttttaaataatatgtccaggggcgtatctaggatttttaggata
ccctgcaaaaaagattcagctatatattagtgattcagctatatatagtg
tctaaggagggcccaccatggttgggcccgacgggctagaaaatttttga
atttcgaccctctagattggctaaaaNAAATGCTTCATGACTGAGCCAAT
CTACTAGCTTCTTGGATGggtttttttggttctgagaataattcttacaa
ttcaggaaaagttctgcACACGTGCAAGGCTTCGAAGTGTATCCATCAAA
GAATTGTTGCCCACAAGATGGAGAGAAGTGGAACTGTACAGgca Run BLAST on NCBI protein sequence of TCONS_00070139-protein >TCONS_00070139-protein ID=TCONS_00070139-protein|Name=TCONS_00070139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MVHVLSEAVRPEVVFSILNHLKTVNPLYQHINIQEILSENAFDVRFVDDE
DVDFSIVDDETVESSVEVLVKFIDDRDVQKISNFEEHDEFENEDPMDQHR
LACVETTLISICPHSIVDDENIVVGPGEGKAPLNILKDPNVEILAFPDLF
PHGKFGLTAYRDGRFTHTKYFNQRLLNYTQRFTSDAD Run BLAST on NCBI transcript from alignment at scaffold_513:262699..264792 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070139 ID=TCONS_00070139|Name=TCONS_00070139|organism=Clytia hemisphaerica|type=transcript|length=2094bp|location=Sequence derived from alignment at scaffold_513:262699..264792 (Clytia hemisphaerica)
tgcCTGTACAGTTCCACTTCTCTCCATCTTGTGGGCAACAATTCTTTGAT
GGATACACTTCGAAGCCTTGCACGTGTgcagaacttttcctgaattgtaa
gaattattctcagaaccaaaaaaaccCATCCAAGAAGCTAGTAGATTGGC
TCAGTCATGAAGCATTTNttttagccaatctagagggtcgaaattcaaaa
attttctagcccgtcgggcccaaccatggtgggccctccttagacactat
atatagctgaatcactaatatatagctgaatcttttttgcagggtatcct
aaaaatcctagatacgcccctggacatattatttaaaaattttcatgata
atactattcgcatataattgtttcagacatactatactagtagtattagt
actatcatatgtgttatgtagtacgtgttatgaattatacgtcatgatat
cgttatattttttccggtctgtaatttgtatgccccgtgccccgtgccct
gtgacccgtgtttcgaactagccgttgTTACTTAGCATACCTGCACTGAT
ATTTCTCCCGGACACTTTCCGCATTGCCAcattgattttattatttgatt
ttataaattGGTTTGTTGAGAAACAAAGTTTGCATAAAAAATTTAATCGG
CATCTGAGGTGAATCTTTGTGTATAATTCAACAACCGttgattaaaatat
tttgtatgaGTGAACCTGCCATCTCGATAGGCAGTTAAGCCAAATTTTCC
ATGTGGGAATAAATCAGGAAAAGCCAAGATTTCAACATTTGGGTCCTTCA
GAATATTCAAAGGGGCTTTTCCTTCACCAGGACCTACTACTATGTTTTCA
TCGTCAACAATAGAATGGGGACATATTGAAATTAGAGTAGTTTCAACACA
AGCTAATCGATGCTGATCCATTggatcttcattttcaaattcatcatgTT
CTTCAAAATTACTAATTTTTTGAACATCCCTATCATCAATAAATTTCACT
AATACTTCTACAGAGGACTCCACTGTTTCATCATCAACTATAGAAAAATC
AACATCTTCATCATCAACAAATCTTACGTCAAAAGCATTTTCGGATAATA
TTTCTTGAATATTAATGTGCTGATATAATGGATTGACTGTTTTGAGGTga
ttcaaaatggaaaaaacaacTTCTGGTCTGACGGCTTCAGATAATACATG
AACCATTATAACACAATTTTCgtttcaacttcataaaaattacGTTAGAT
TCATTGAGAGTTCTCGGTAAAACATTACAGACTTCTTCGGTTTCAACCGG
TATATTGCAAACGATCATTTTTGGAAACTGACCTTTTGGCATTATCttga
ttttagaaaacaaaatacGCTGTGATATAACTGCACGTTCCATTTTATTA
ATGTTTTTCAAATGCTCTGGCAAGTCGTACAATTCAAGTTTGTTGCTTAC
ACTTTGACATGGAATTTCTTGCTTTAGTAAGGTTTTATCGCAAGTTTTGC
AAATATAAAATAAGTTATCAAAGCTTGGAATAGGATTGCACTGAGGATCA
AATCCATTTTTTGTGTACTTTTCTTTCTTGAAATAGATAAATGATCTCTT
ATAAAGACACCGATGACACATACTTAAAATGGCCCATCTTTAATACTTTC
CTGAAatctttaaactcttttagTACTGTCTGAATTACTTTggtcttttt
gtttcttttctttaaaacgaattctatttttctctttaaggtatgtgtac
accttttttccgattttttgtcaaaaaactttttttcagtcaaagtggaa
gaaaagttactggatttcattttggtaaaatagcgatcttaaaatctttt
tttgatccagagttataaccatttaaattacaaaacaaagttcgtcttat
gatggattatttactcaaataattgtctctttcggaaaaaaaacaaagaa
aaaagagagaattcagctgatgtttattctcacctctattgaatagtaat
atttttgacacatttcactagttactcaaataaacagcaatcatcttGTT
AAAATTTCAAATTGATGTAGAAAAAAACGAAATTTtaccacacc Coding sequence (CDS) from alignment at scaffold_513:262699..264792 >TCONS_00070139 ID=TCONS_00070139|Name=TCONS_00070139|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_513:262699..264792 (Clytia hemisphaerica)
TTAATCGGCATCTGAGGTGAATCTTTGTGTATAATTCAACAACCGttgat
taaaatattttgtatgaGTGAACCTGCCATCTCGATAGGCAGTTAAGCCA
AATTTTCCATGTGGGAATAAATCAGGAAAAGCCAAGATTTCAACATTTGG
GTCCTTCAGAATATTCAAAGGGGCTTTTCCTTCACCAGGACCTACTACTA
TGTTTTCATCGTCAACAATAGAATGGGGACATATTGAAATTAGAGTAGTT
TCAACACAAGCTAATCGATGCTGATCCATTggatcttcattttcaaattc
atcatgTTCTTCAAAATTACTAATTTTTTGAACATCCCTATCATCAATAA
ATTTCACTAATACTTCTACAGAGGACTCCACTGTTTCATCATCAACTATA
GAAAAATCAACATCTTCATCATCAACAAATCTTACGTCAAAAGCATTTTC
GGATAATATTTCTTGAATATTAATGTGCTGATATAATGGATTGACTGTTT
TGAGGTgattcaaaatggaaaaaacaacTTCTGGTCTGACGGCTTCAGAT
AATACATGAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070139-exon-scaffold_513-1491911889:262699..264792 | TCONS_00070139-exon-scaffold_513-1491911889:262699..264792 | Clytia hemisphaerica | exon |
| TCONS_00070139-exon-scaffold_513-1510915933:262699..264792 | TCONS_00070139-exon-scaffold_513-1510915933:262699..264792 | Clytia hemisphaerica | exon |
| TCONS_00070139-exon-scaffold_513-1575043694:262699..264792 | TCONS_00070139-exon-scaffold_513-1575043694:262699..264792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:262699..264792 . |
Blast
The following BLAST results are available for this feature:
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