|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070160 ID=TCONS_00070160|Name=TCONS_00070160|organism=Clytia hemisphaerica|type=transcript|length=2109bpRun BLAST on NCBI protein sequence of TCONS_00070160-protein >TCONS_00070160-protein ID=TCONS_00070160-protein|Name=TCONS_00070160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp NTKISNVNETMKDELNPIFCTGRGPDKENIDNININDVLGGYSLTLIDSLRun BLAST on NCBI transcript from alignment at scaffold_514:14425..32556+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070160 ID=TCONS_00070160|Name=TCONS_00070160|organism=Clytia hemisphaerica|type=transcript|length=18132bp|location=Sequence derived from alignment at scaffold_514:14425..32556+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_514:14425..32556+ >TCONS_00070160 ID=TCONS_00070160|Name=TCONS_00070160|organism=Clytia hemisphaerica|type=CDS|length=21672bp|location=Sequence derived from alignment at scaffold_514:14425..32556+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070160 vs. Swiss-Prot (Human)
Match: EDEM1 (ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Homo sapiens GN=EDEM1 PE=1 SV=1) HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0 Identity = 303/508 (59.65%), Postives = 385/508 (75.79%), Query Frame = 1
Query: 34 KDELNPIFCTGRGPDKEXXXXXXXXXVLGGYSLTLIDSLDTLAVIGNHSEFKNAVSRVISNVNFNTDNTIQIFEAAIRVLGGLLSAHLLIVSPSKEFQSLRPQDYGDELLNMAHDLANRLLVAFEGTQTGIPWPRVNLISGVPPNXXXXXXXXXXXXLVLEFGILGRLLDDPTIEYQARKVVDELWSYQSKSTGLFGNVIDIHSGEWIGKMSGLGAGIDSFYEYLLKSYILFGQKEDLHRFNKIYDRIKRHMRKGRRKCNNGTGEVPLYVNVHMDSGEIMNTWIDALQSVFTGVQVLHGDIEEAICSHAIYYAIWRKYGALPERFNWKLKAPDVKFYPLRPEFSESTYLLYQATKHPFYLHVGTEIVESLNKYTKVKCGYATLHDVEDKSTEDRMESFFLSETIKYLYLLFDVDNPINKDASQWIFSTEGHIFKLDQKYRGKXXXXXXXXXXXXRANDDDVLNVHQSANQ-----TETTSCDNYKIDKSSRMPLFDRYYTQIKDFVGI 1542
+DELNPI C GRGPD+ + N+NINDVLG YSLTL+D+LDTLA++GN SEF+ AV VI+ V+F+ D+T+Q+FEA IRVLG LLSAH +I + F + +DY +ELL MAHDLA RLL AFE T+TGIP+PRVNL +GVPP+ TCTAGAG+L++EFGIL RLL D T E+ AR+ V LW+ +S TGL GNV++I +G W+GK SGLGAG+DSFYEYLLKSYILFG+KEDL FN Y I+ ++R+GR CN G G+ PLYVNV+M SG++MNTWID+LQ+ F G+QVL GD+E+AIC HA YYAIW++YGALPER+NW+L+APDV FYPLRPE ESTYLLYQATK+PFYLHVG +I++SL KYTKVKCGYATLH V DKSTEDRMESFFLSET KYLYLLFD DNP++K ++++F+TEGHI +D+ R + + ++ EE D +VH+ +++C+ ++ +PL Y QI VG+
Sbjct: 152 QDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLR---ELPWKEFFSEEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGL 656 The following BLAST results are available for this feature:
BLAST of TCONS_00070160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.