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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070169 ID=TCONS_00070169|Name=TCONS_00070169|organism=Clytia hemisphaerica|type=transcript|length=358bp
gtttgCATGATGATGGAAATTTTGATGAGATGAAGAGCGATCAATGCATC
ACTCTAATGCTTGGGACAGCAAAAGAGTCAAAAGGTCGTCAATGTGTCAT
CACAGATGAATGTTTGAAGATGGAACTGACTCGTAAAACAAAAGGTTATG
AAACCACTCACCAGTACCTTTACTTTATAGCAGGATTCATCAATGGCTGT
GATCGGGAAATGGCAGAAGCTCTCGGTTCGAAGGAGAAATTAATGTTTGA
GATTGAACGTATGGCTGCCAATATTGCATATCAAATGTTAAATTTACATA
GCAACAATCAACATATGGTTGATCTCGATATCCAGACGGAGCAAGGTCTA
ATGTGTGG Run BLAST on NCBI transcript from alignment at scaffold_514:188395..191114+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070169 ID=TCONS_00070169|Name=TCONS_00070169|organism=Clytia hemisphaerica|type=transcript|length=2720bp|location=Sequence derived from alignment at scaffold_514:188395..191114+ (Clytia hemisphaerica)
gtttgCATGATGATGGAAATTTTGATGAGATGAAGAGCGATCAATGCATC
ACTCTAATGCTTGGGACAGCAAAAGAGTCAAAAGGTCGTCAATGTGTCAT
CACAGATGAATGTTTGAAGATGGAACTGACTCGTAAAACAAAAGGTTATG
AAACCACTCACCAGTACCTTTACTTTATAGCAGGATTCATCAATGGTAAG
TATCAACAGTATCAATTGTTTTAGAAATTGAAGAGATAATGGATTCTTCA
CCAAACAGCACCAGAGTCCGGAATCAATCGGTAGTCCTTCCGAAGACGCC
GTTGATCCCCGGGCAAGGCCCTGATTTTTACGATCATTTTTCTCTCTTtg
atactattttctatttctatttctataaaTTAATCCAAAGAGTACATTAT
GTACATTTTCCCGGATAACGGGATCCAAAGATTGAGATATCTCTGGCGCC
AGAGGGTGGAATCCATCACCAtcggtcgaaggatgatgatgaagtATTAA
TAAGCTTGCTTTGAGCAATTCTATATATGAAGCAAGTTCAGCATTTTTTC
ATGACCTCACTTTTTAAATGTCAATCTGGCTTATTCGACCGATAATCCAA
ATAACTCAAATCCTGCAGGGGGGGGGGGTACTAAGGCTCGGAGAATGTCA
GTTATGTGCGGACCGGAAAAATATAGGGGTAATTCATGTCCTTTGGAGTG
ACTTTTATGATTTAATTTTTTGTTGTTTTTGTAACCTTTAGAGTAACTTG
GGACCCTTACCGTCGGTACATACCAAACACCTTTTTTACCTCTCCTTTCT
CCCTAGTTAATTGGTTTAAATTAGTTACTGTTAAAGATTAAGTTTTTTGT
GGGAGACCATCATTACAAGTACAATTAACTCCTTAAGGCATGGGAAAAAC
TTATTTTAATACAGTTTCATTTGTTCGTAGGCTGTGATCGGGAAATGGCA
GAAGCTCTCGGTTCGAAGGAGAAATTAATGTTTGAGATTGAACGTATGGC
TGCCAATATTGCATATCAAATGTTAAATTTACATAGCAACAATCAACATA
TGGTTGATCTCGATATCCAGACGGAGCAAGGTATCATCGTCAACAGTTTA
CACCCCTGTCTCACAGCCCCATTGAAGCTTTTTCCCAACGCAGCGGGGAT
AAACATTTCTATAAAAATACCGaattgaataaaataaaagcAGTCAATTT
TCCATGCAAAATctagatgaaaaaaatcaagttgcCGACGAACCTGTGCT
TTATCAAATCCTTACAGTTAGATGGATGTCAAAATTTTGTTACGATTTAT
GTTGAATCTGCATTCCAAACTAGAAATTCTGTTTCGAATATTTGGGATAA
TTTCACCAAATTCTATCACTAGTGAAGGCTCTATTTAAGTAGAACTATCT
CTCAggataattgaaaaaaaagaagttttttaaTCATCTACTTTAGCGGC
TGTATATTTCAGCCAGTTTACATTTTATGGGTTGTAGTTTCGATCCACAG
TCACTGTAAACTCTGCAAAAGTTGAATGGGTAGCTTAGATTGAGTTATAT
GATCGAgtgtcaaatattgtccaaattttaccaattttaagtgctcttta
ttttgcatgatattgtcgatttagagtagtctgaaaaattaagaacgcat
ttaagaacattttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcgcatttaagaacattttaggctgaaaactgccaaaaaaataagcaca
tccaggctcagccaaattttaggtgttctaataaaaaaaaaacgtgtaga
tccGTGAAGGGATACTAAGATGtctctaacctgatgtgtaacctaatttt
CTTTTCGCTGTTTTTCGCGAACAACCGCAAAAACTGACTATggcgtcata
atcgatgacgtcataaaagctGAAAATTTCTCAAAGGATTGATTATCCGA
TTGTaagatgtatctcactaaagtcgatcatttgacgTTAGCAGAAATTA
GTAAGAAacgaaaaatcttattttgtgttgacgtaatcagaatttcaaaa
aaaattctttaatgacgtcatcgattatgacgtcataattagttttgcgt
ttttttttcaaaaatcagcgATAAAACAACTAAGTTACACACCAGGTTAG
AAACTTTATCATAtcacccttcatgttcagtcatttgtttggtcattttt
tgTCGACTGATGCGATCTAAAAaaatatggtaattttcagtttttgagac
atgtcATAATATACCCGATTGTGGTGATCTATTTCAGCATTCGATCTTCT
AGGTCTAACACAAATAGAAAATAGACCGGGGGGAGCAGTCAGGCATATTG
ACCGACgagtatgtgcggcggttaagtgtatgtttttcaaaatatcagaa
atgggtggacttttgataaatgcactgtatgggtgaaaatttcagcaaat
ctagagaaaataggaaatttttgctcgaaaatcttgattttttgctctaa
aagagtttaaaatctgaaaaaatgcactgtaagggtatggatttcaccga
ttttttttcTGCAGTTGGGAAAATGGGATAGACTCCCACTCTACCAGCTC
TGAGAAACCCACTAGATAATATACTTGCTATACCTTACTTTACTTAACTT
TTTCAAGGTCTAATGTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070169-exon-scaffold_514-1491911889:188395..188589 | TCONS_00070169-exon-scaffold_514-1491911889:188395..188589 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1510915933:188395..188589 | TCONS_00070169-exon-scaffold_514-1510915933:188395..188589 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1575043694:188395..188589 | TCONS_00070169-exon-scaffold_514-1575043694:188395..188589 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1491911889:189325..189474 | TCONS_00070169-exon-scaffold_514-1491911889:189325..189474 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1510915933:189325..189474 | TCONS_00070169-exon-scaffold_514-1510915933:189325..189474 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1575043694:189325..189474 | TCONS_00070169-exon-scaffold_514-1575043694:189325..189474 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1491911889:191102..191114 | TCONS_00070169-exon-scaffold_514-1491911889:191102..191114 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1510915933:191102..191114 | TCONS_00070169-exon-scaffold_514-1510915933:191102..191114 | Clytia hemisphaerica | exon |
| TCONS_00070169-exon-scaffold_514-1575043694:191102..191114 | TCONS_00070169-exon-scaffold_514-1575043694:191102..191114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_514 | supercontig | scaffold_514:188395..191114 + |
Blast
The following BLAST results are available for this feature:
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