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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070170 ID=TCONS_00070170|Name=TCONS_00070170|organism=Clytia hemisphaerica|type=transcript|length=3031bpRun BLAST on NCBI protein sequence of TCONS_00070170-protein >TCONS_00070170-protein ID=TCONS_00070170-protein|Name=TCONS_00070170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=615bp MKGIKVLLLFTLLFGSIQQMNGRSMVDIKKLISDIRHEVKELKDVVAEKKRun BLAST on NCBI transcript from alignment at scaffold_514:224590..255037+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070170 ID=TCONS_00070170|Name=TCONS_00070170|organism=Clytia hemisphaerica|type=transcript|length=30448bp|location=Sequence derived from alignment at scaffold_514:224590..255037+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_514:224590..255037+ >TCONS_00070170 ID=TCONS_00070170|Name=TCONS_00070170|organism=Clytia hemisphaerica|type=CDS|length=25872bp|location=Sequence derived from alignment at scaffold_514:224590..255037+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070170 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 1.114e-25 Identity = 72/190 (37.89%), Postives = 95/190 (50.00%), Query Frame = 1
Query: 733 PYKIDSSFSSAERQTIKTAIEELNGYLDGCTGEKLKERTSESNTGVVRFKNDKPGCWSYLGKTSLNPQPINLHIGCVRKGIIQHEILHALGFNHEQSRTDRDNYVKIQSENIQDGMDNNFKKMSDMTLVSQKSKYDYKSVMHYTKKAFSKNGKETIVAAENAINAPATFGQRTGLTDLDREELQAVYGCS 1302
PY ++ S + I A E L C K E+N V FK GCWS +G + Q +++ C R +QHE LHALGF HEQSR+DRD+YV+I + I G ++NF SD S YDY SVMHY+K AF + TIV + + GQR +D D +L +Y CS
Sbjct: 76 PYVLEDSLEMNAKGVILNAFERYR--LKTCI--DFKPWAGETNYISV-FKG--SGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRIS--DFEDVIGQRMDFSDSDLLKLNQLYNCS 256 The following BLAST results are available for this feature:
BLAST of TCONS_00070170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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