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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070173 ID=TCONS_00070173|Name=TCONS_00070173|organism=Clytia hemisphaerica|type=transcript|length=1449bp
TTAAGCAATCTAATTCGACTAAATTGACTTTACATTTAACGCATCAATGC
AAAGAATTCTCATTGGAAACTACGACACAAAGATCTGCATACATTTTCTT
TTATGAAAAGGCTTCATCTTTATGTGGCGACTCAAAATCACGGGAAGGTT
TTTGCATACATACAGAGTACGATAGGACATCAACCAAGGCACCTAGACCA
ACTATTCTTGGAAGAGAAGACACAAAACTTTCGGGCAATTTTGAAAGAAG
TGTTTATCTTAATTGTGGTAATGTGAATCCCCAACGAGTAATTAGGATCT
GGATGAGTACTAGAAGAACATCACGGTCGGCAGGTGTTAACGATAAgtta
actttcaaaaaactccagaTGACACGTGGCAAATGTGGAGAACAGCAAGG
ACGTAAACGTTGATAAAATCCTAACGAGAATTGACCGACAACCTAGGCCT
TACACATACTTTATACATTATTTTACTTTAAGGGACGAAATATTCGCAAA
CAGAAAAATTTCACTAAACCAAAACCataaaatttcgcaaaatttcGCGG
ATCCAACTCACCAAGCtttgcaaattttactttttgtgCAAAATCAACGG
CTTAATTTGTTTCTACTCATTTATTTATCATACTATTCTTTGCCATTTTA
CTTAGGAAGTGCATcaatttgaaatagtttttgcTTTATTAGGCTATTTG
AGAATAATTGCCAAAGTTAAAACCCCGTAAAAGAATCTCACGCACACATA
TTTAATTCAACATCAACGCCTCGTTATAATTATTGTAGATAAGGTTtaat
tattatatacctgtaggcaaaaacagccattgaataattcctgatatatc
TCTATgattataccacggtagaattgtttttcaaattttcctttcaaagt
tttttttttgttgctcttGTTGTTAATCATCAAAGAAGTTCATTAAAATA
ATTCTCGATTTCATGAGCAAATTTTATGaatcaaagtaattaagaaaatc
atcaaaaaaggaaaacattcgAACCCCCACCCGGGTACACTCCCAAAATC
GAACGTttgggggtacttaggcaaaaatggatgatgggtatgtgcggacg
ataGGGGTCGGTTTTTCCACCTTCTCtcgtctctctaagggtcgaaaaaa
tcagaaattatatattagtctctctaagggtcggcaAATTCAGgatttta
aggaaattttttaatttccagagaaagaaattgtgataaagtctctctaa
aggtcaccttttcagcaaaaatcagtctctctaagggtcggttttcggag
gtcccgtccgcacttACCCATCATTCGCCAACCCAAGTACCTCCCCCCgg
cagtctgtgccactaacccgatcgggaagattcttccgaaatgggaagaa
acttcccgaacgggaagaacttaggcgaattttttcttcctgatTGGGA Run BLAST on NCBI transcript from alignment at scaffold_514:253122..255037+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070173 ID=TCONS_00070173|Name=TCONS_00070173|organism=Clytia hemisphaerica|type=transcript|length=1916bp|location=Sequence derived from alignment at scaffold_514:253122..255037+ (Clytia hemisphaerica)
TTAAGCAATCTAATTCGACTAAATTGACTTTACATTTAACGCATCAATGC
AAAGGTATCTTTCATTATAAAAAGGGGCACTCTTACGGTTTTGTTTTCTC
AGATTTTGTCCCAGAAAACTGGGACAAACTAAGGCACATAACCTGCTCGC
TAACCgaaacagatagtttttccAACAGAACCagttctcaaaaaagtttc
aaaatcctATCTACTTTCGAAACAATCACATGCAGCTGCGTCCCACGAAA
GAGGCTACGGCTCATAAGGGTTGGTTGAACCCCCTACTAATTTGGACGAT
ATAAATAGGGTGAATAGTAGTAGAGTAGGGTGAATCTCttactgattttt
tttgaagttggtTAGTTGTTAAAAGTGAAAATCCATTATTTTCTTTAGAA
TTCTCATTGGAAACTACGACACAAAGATCTGCATACATTTTCTTTTATGA
AAAGGCTTCATCTTTATGTGGCGACTCAAAATCACGGGAAGGTTTTTGCA
TACATACAGAGTACGATAGGACATCAACCAAGGCACCTAGACCAACTATT
CTTGGAAGAGAAGACACAAAACTTTCGGGCAATTTTGAAAGAAGTGTTTA
TCTTAATTGTGGTAATGTGAATCCCCAACGAGTAATTAGGGTAAgtgttt
ctttctttgtttctttattttccatttCACAATCAGTAATAACTTATAAA
TTATTTCCCATTTTTAAGTCACAAATGAAGAAAAACCCTTCAAAGTCTTA
TCTTTAATTTCAGATCTGGATGAGTACTAGAAGAACATCACGGTCGGCAG
GTGTTAACGATAAgttaactttcaaaaaactccagaTGACACGTGGCAAA
TGTGGAGAACAGCAAGGACGTAAACGTTGATAAAATCCTAACGAGAATTG
ACCGACAACCTAGGCCTTACACATACTTTATACATTATTTTACTTTAAGG
GACGAAATATTCGCAAACAGAAAAATTTCACTAAACCAAAACCataaaat
ttcgcaaaatttcGCGGATCCAACTCACCAAGCtttgcaaattttacttt
ttgtgCAAAATCAACGGCTTAATTTGTTTCTACTCATTTATTTATCATAC
TATTCTTTGCCATTTTACTTAGGAAGTGCATcaatttgaaatagtttttg
cTTTATTAGGCTATTTGAGAATAATTGCCAAAGTTAAAACCCCGTAAAAG
AATCTCACGCACACATATTTAATTCAACATCAACGCCTCGTTATAATTAT
TGTAGATAAGGTTtaattattatatacctgtaggcaaaaacagccattga
ataattcctgatatatcTCTATgattataccacggtagaattgtttttca
aattttcctttcaaagttttttttttgttgctcttGTTGTTAATCATCAA
AGAAGTTCATTAAAATAATTCTCGATTTCATGAGCAAATTTTATGaatca
aagtaattaagaaaatcatcaaaaaaggaaaacattcgAACCCCCACCCG
GGTACACTCCCAAAATCGAACGTttgggggtacttaggcaaaaatggatg
atgggtatgtgcggacgataGGGGTCGGTTTTTCCACCTTCTCtcgtctc
tctaagggtcgaaaaaatcagaaattatatattagtctctctaagggtcg
gcaAATTCAGgattttaaggaaattttttaatttccagagaaagaaattg
tgataaagtctctctaaaggtcaccttttcagcaaaaatcagtctctcta
agggtcggttttcggaggtcccgtccgcacttACCCATCATTCGCCAACC
CAAGTACCTCCCCCCggcagtctgtgccactaacccgatcgggaagattc
ttccgaaatgggaagaaacttcccgaacgggaagaacttaggcgaatttt
ttcttcctgatTGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070173-exon-scaffold_514-1491911889:253122..253175 | TCONS_00070173-exon-scaffold_514-1491911889:253122..253175 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1510915933:253122..253175 | TCONS_00070173-exon-scaffold_514-1510915933:253122..253175 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1575043694:253122..253175 | TCONS_00070173-exon-scaffold_514-1575043694:253122..253175 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1491911889:253520..253761 | TCONS_00070173-exon-scaffold_514-1491911889:253520..253761 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1510915933:253520..253761 | TCONS_00070173-exon-scaffold_514-1510915933:253520..253761 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1575043694:253520..253761 | TCONS_00070173-exon-scaffold_514-1575043694:253520..253761 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1491911889:253885..255037 | TCONS_00070173-exon-scaffold_514-1491911889:253885..255037 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1510915933:253885..255037 | TCONS_00070173-exon-scaffold_514-1510915933:253885..255037 | Clytia hemisphaerica | exon |
| TCONS_00070173-exon-scaffold_514-1575043694:253885..255037 | TCONS_00070173-exon-scaffold_514-1575043694:253885..255037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_514 | supercontig | scaffold_514:253122..255037 + |
Blast
The following BLAST results are available for this feature:
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