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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070175 ID=TCONS_00070175|Name=TCONS_00070175|organism=Clytia hemisphaerica|type=transcript|length=1102bp
aaatttgatttgaGATGGTGTTTACAATGATGTATAGTGCACGAGGCAAA
AAACGTTTAAAGTTGCCGAGTGCCAACTTTTTCTTCATGCTTTATTGGGG
GATATTCTCGCATGAATAGTTAACGAATTGAAGCCAAACTTCATCATTGA
TTAGCACTGTTTTCTTTGATTACTTTTCTAATTTGGTTGGTTAGAAGTCT
TTTCTGGAGTTTTTAACATACTTCTAATTTTATTTCGTTAAGAAGAAGTA
TACGAGATTACTACCCGACGCTCGTAAATaacgacatttgattggcttct
ttgctgtccaatatttttgaatatataACTTCCGCCATCGAAAATTGGAG
AATTCGGACAAATggaacttttttgtttcaaaatgatTCTATTGCCGTGT
ATTCTgctgactgttttttttttcggtgaAATGAAAGCGAACACTATAGA
AGTGAACCGAAAAAATGGTTTATCCTTTGGAGATCTTTATGTTCCACCAG
GTGGTATTGCAGAATGCTCAAGATACGGTggtgttgattttttttcgagt
tCTTGCCAATGCAAAAATGCGCAAGGGATCTTGGGAACGTTCACAGATCA
ATGTGACTATGACTTGAAAACTAGCTCAGgGTGCGAGTGGCAGATTCATC
AAAGCAATTCACCATTTTACATGGATAGTGCAACTGACATTCTGAATAAA
GTTTTTATTGGCACTGATAAAACAACATTCGTAACAAATTGCAAGGATAT
CGCATACTTAGGAGCTAAGATATGGGAAAATGGGAAATGGAATTCTTTTG
CAGCTGATCAATTTGATAAGGAGAAAATCGGTAATCAATACTTACTGAAG
TGGATAAACGGCCAGCAGCCAAATACTCAAGACTGGACAAAGTATGTTGG
ACAATTGTTTAGAATCAATCTCGGATGTTTACCATTGGAAGGAAATCAAT
TTCAACCCAACTGTTTATTGGTTAAAATAAAGGGGAAAAGAGAATATACT
ACTGGAAATCTACCGCCCACAATACCCGCCACCACAACATCACAGCACAC
CAAAACAGGATTAACAGATCAACCAGCCACTCAAACGACAACTGCACCAA
AG Run BLAST on NCBI protein sequence of TCONS_00070175-protein >TCONS_00070175-protein ID=TCONS_00070175-protein|Name=TCONS_00070175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MELFCFKMILLPCILLTVFFFGEMKANTIEVNRKNGLSFGDLYVPPGGIA
ECSRYGGVDFFSSSCQCKNAQGILGTFTDQCDYDLKTSSGCEWQIHQSNS
PFYMDSATDILNKVFIGTDKTTFVTNCKDIAYLGAKIWENGKWNSFAADQ
FDKEKIGNQYLLKWINGQQPNTQDWTKYVGQLFRINLGCLPLEGNQFQPN
CLLVKIKGKREYTTGNLPPTIPATTTSQHTKTGLTDQPATQTTTAPK Run BLAST on NCBI transcript from alignment at scaffold_514:129629..132875- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070175 ID=TCONS_00070175|Name=TCONS_00070175|organism=Clytia hemisphaerica|type=transcript|length=3247bp|location=Sequence derived from alignment at scaffold_514:129629..132875- (Clytia hemisphaerica)
AAATTTGATTTGAGATGGTGTTTACAATGATGTATAGTGCACGAGGCAAA
AAACGTTTAAAGTTGCCGAGTGCCAACTTTTTCTTCATGCTTTATTGGGG
GATATTCTCGCATGAATAGTTAACGAATTGAAGCCAAACTTCATCATTGA
TTAGCACTGTTTTCTTTGATTACTTTTCTAATTTGGTTGGTTAGAAGTCT
TTTCTGGAGTTTTTAACATACTTCTAATTTTATTTCGTTAAGAAGAAGTA
TACGAGATTACTACCCGACGCTCGTAAATAACGACATTTGATTGGCTTCT
TTGCTGTCCAATATTTTTGAATATATAACTTCCGCCATCGAAAATTGGAG
AATTCGGACAAATGGAACTTTTTTGTTTCAAAATGATTCTATTGCCGTGT
ATTCTGCTGACTGTTTTTTTTTTCGGTGAAATGAAAGCGAACACTATAGA
AGTGAACCGAAAAAATGGTTTATCCTTTGGAGATCTTTATGTTCCACCAG
GTGGTATTGCAGAATGCTCAAGATACGGTGGTGTTGATTTTTTTTCGAGT
TCTTGCCAATGCAAAAATGCGCAAGGGATCTTGGGAACGTTCACAGATCA
ATGTGACTATGACTTGAAAACTAGCTCAGGTATGTATTATTAGTTACACG
GACTTCTTGAGGTAGGGTACGGTATATCGAGTTGTTAAAAACCGTATTGG
TGGCGAGGCTTGCCGAGGTTAAGTGGAATTTTCTAATGAAAATAAAGGAT
GTAGAAGTTGCACATCTTTGTTGAAACTTTAACGGACTGTGCGATTCTCT
TCTCTTCTCATGTGTGCATCTGTTACATGCAATTTTCTATTCGATCAAAG
GGGGAAAATGCAAAAGTCCTCAATTTTTATTGTTTTTAAGGGTGCGAGTG
GCAGATTCATCAAAGCAATTCACCATTTTACATGGATAGTGCAACTGACA
TTCTGAATAAAGTTTTTATTGGCACTGATAAAACAACATTCGTAACAAAT
TGCAAGGATATCGCATACTTAGGAGCTAAGATATGGGAAAATGGGAAATG
GAATTCTTTTGCAGCTGATCAATTTGATAAGGAGAAAATCGGTAATCAAT
ACTTACTGAAGGTAAGAGCAGAGAGTCACGAATACATCAGCTTGCATAAC
AGAGCTAAAAGTTTTATCTTTACATAAGTGTAGTCCCCGTTGCACATCAG
AGACATATTTCATATCATATTGTTATATTATGCTGATATAAGCAAAATAA
TGTTTTTTCTCTCTTTTCGACCAATCTTTCTCCACATACGTGTCAATCCA
ATGTGAAAAAGCTTCTGAATCAAAATTGTTAAGTAGGCAAACGATATTAC
TCTTATTTAAAGTCAAAATCTTCAACGCTTACTTATTTGACGTTCTACTA
TTCAAAACGCTCCATTATTCGATAATATTGAGAGTCATCATCAACAAGAA
AATCTCATAGGCGACGCTCTCCTATTTCACATGCTTCCTTCTCCGATGAA
AATCAAATCGCTTTGAAAATCAATTCAGAGAGCTTGAAATGTACCACCCT
GATTATGACTCAAATTTCATAAACAATGGGCCATTCCATTTTATGTCAAT
ACATAGGGGTGGACGAACTTTTCCAGGGGGTATTTGGAAAATTTCCAGGG
GTTCCTGTAAAATTGAGACTATTTTCCGGGGGGTTAGACAAGTAATCATC
GTCCTCCAGATATTTAATTCTCCAGGGGTCGAGTCGAAGTTACAAAATTT
TCCAGGGTATAAAAAAAATTTATGACCAATTTCCAGAGGGCTAAATGATA
ATATGAATTTTTCCAGGGGTTAATACCAAATTTTACTTCGTCCACCCTAC
CACCAGAACCATGGGAAAAAAATTTCCAGGGGATGGTGGAAAGAATTTTT
CCAGGGGCTTTTTCAGATTTTACCATTTTTCCAGGGGGTATAGACACATT
TTCAGAGAAAAAAAATTACCCTAAAAAGGTTCGTCCACACCCCTGTATGG
TTTTTTTTTGGAATGGCCCAATGGTATACTAATATCAAACTTCTTTCTGA
GCTTTTAACCCTTAGGAGACGGATAATTTATGCCCAAAAAAGTGTTCATC
TTTTAATCATCAATCGAGTGACCGTAACCATTGATCTCAAAGCCCCGAAG
GAGCTAAACTCATGGATGTGAAATGAAGCCGCTCATTTTCCATTCAGAAC
AGTGACCCGTGTGTTTTCCAAAGAAATTTCTTTAGTGCAGGGCAAACTTA
AAGCTTCACTTTCTCTTGCTTGAGAAAAATTGAAGATTCCTCTCTAGTCC
CTTCGGGGCTTCAAGCTCAATGACCGTAACTCAATACATTAACAGTATCA
GTCTAAAGAAGGTTAGAGAGAAAGTCAGTGTACTAAAATCACCTTAATGA
ACACACTTGAGCCTGATAATATAATGTTTTTAGGGACTCTACAACTTGTT
CTTAGAAAAATAATTTTCATTCATTCCATTAAAGTGGATAAACGGCCAGC
AGCCAAATACTCAAGACTGGACAAAGTATGTTGGACAATTGTTTAGAATC
AATCTCGGATGTTTACCATTGGAAGGAAATCAATTTCAACCCAACTGTTT
ATTGGTTAAAATAAAGGGGAAAAGAGGTATCTATTTTTTCAAAGTTAATA
TTTCAGCCAAATTTAGGGGAAATGATACCAAATAGTAATTACTGACTTCC
AAACTAAAATTAATTCAGCAAAATTGCATAATATTTTTATAACTAGAATG
GGGTTATCACGGGAGGTGGGTGTTGGGCACTGACCTTGACGGCCGACGGG
GACGTGCCGCTGGAGTTGTAATAGTGGACCCTGTCGGATATGAATGTATG
GTAAATTTGAGACCCTGTCAGCGAAATGTAGCAAAATATTTCAAAAAAAG
ATTTCAAATTTCCACCTGAAAATTGTTCAAAGTAACCAAAACTCAGATAC
ACATCTTGGTAATTAGTAAACTTTGGACCCTGTCATATATCTTCGGAGCC
TAAAAAAAAGAACTCAGACCAGCCGAAATTCCCCATTTATAATGTTACCT
GGTGCATCCTCCGGGATTAGATTTAGATTTTAACTATTAAAATTATTTTT
CTAATTTCTTAAACCGATGTGCCACTTTGATTTCTAGAATATACTACTGG
AAATCTACCGCCCACAATACCCGCCACCACAACATCACAGCACACCAAAA
CAGGATTAACAGATCAACCAGCCACTCAAACGACAACTGCACCAAAG Coding sequence (CDS) from alignment at scaffold_514:129629..132875- >TCONS_00070175 ID=TCONS_00070175|Name=TCONS_00070175|organism=Clytia hemisphaerica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_514:129629..132875- (Clytia hemisphaerica)
AATATACTACTGGAAATCTACCGCCCACAATACCCGCCACCACAACATCA
CAGCACACCAAAACAGGATTAACAGATCAACCAGCCACTCAAACGACAAC
TGCACCAAAGTGGATAAACGGCCAGCAGCCAAATACTCAAGACTGGACAA
AGTATGTTGGACAATTGTTTAGAATCAATCTCGGATGTTTACCATTGGAA
GGAAATCAATTTCAACCCAACTGTTTATTGGTTAAAATAAAGGGGAAAAG
AGGGTGCGAGTGGCAGATTCATCAAAGCAATTCACCATTTTACATGGATA
GTGCAACTGACATTCTGAATAAAGTTTTTATTGGCACTGATAAAACAACA
TTCGTAACAAATTGCAAGGATATCGCATACTTAGGAGCTAAGATATGGGA
AAATGGGAAATGGAATTCTTTTGCAGCTGATCAATTTGATAAGGAGAAAA
TCGGTAATCAATACTTACTGAAGATGGAACTTTTTTGTTTCAAAATGATT
CTATTGCCGTGTATTCTGCTGACTGTTTTTTTTTTCGGTGAAATGAAAGC
GAACACTATAGAAGTGAACCGAAAAAATGGTTTATCCTTTGGAGATCTTT
ATGTTCCACCAGGTGGTATTGCAGAATGCTCAAGATACGGTGGTGTTGAT
TTTTTTTCGAGTTCTTGCCAATGCAAAAATGCGCAAGGGATCTTGGGAAC
GTTCACAGATCAATGTGACTATGACTTGAAAACTAGCTCAGAATATACTA
CTGGAAATCTACCGCCCACAATACCCGCCACCACAACATCACAGCACACC
AAAACAGGATTAACAGATCAACCAGCCACTCAAACGACAACTGCACCAAA
GTGGATAAACGGCCAGCAGCCAAATACTCAAGACTGGACAAAGTATGTTG
GACAATTGTTTAGAATCAATCTCGGATGTTTACCATTGGAAGGAAATCAA
TTTCAACCCAACTGTTTATTGGTTAAAATAAAGGGGAAAAGAGGGTGCGA
GTGGCAGATTCATCAAAGCAATTCACCATTTTACATGGATAGTGCAACTG
ACATTCTGAATAAAGTTTTTATTGGCACTGATAAAACAACATTCGTAACA
AATTGCAAGGATATCGCATACTTAGGAGCTAAGATATGGGAAAATGGGAA
ATGGAATTCTTTTGCAGCTGATCAATTTGATAAGGAGAAAATCGGTAATC
AATACTTACTGAAGATGGAACTTTTTTGTTTCAAAATGATTCTATTGCCG
TGTATTCTGCTGACTGTTTTTTTTTTCGGTGAAATGAAAGCGAACACTAT
AGAAGTGAACCGAAAAAATGGTTTATCCTTTGGAGATCTTTATGTTCCAC
CAGGTGGTATTGCAGAATGCTCAAGATACGGTGGTGTTGATTTTTTTTCG
AGTTCTTGCCAATGCAAAAATGCGCAAGGGATCTTGGGAACGTTCACAGA
TCAATGTGACTATGACTTGAAAACTAGCTCAGAATATACTACTGGAAATC
TACCGCCCACAATACCCGCCACCACAACATCACAGCACACCAAAACAGGA
TTAACAGATCAACCAGCCACTCAAACGACAACTGCACCAAAGTGGATAAA
CGGCCAGCAGCCAAATACTCAAGACTGGACAAAGTATGTTGGACAATTGT
TTAGAATCAATCTCGGATGTTTACCATTGGAAGGAAATCAATTTCAACCC
AACTGTTTATTGGTTAAAATAAAGGGGAAAAGAGGGTGCGAGTGGCAGAT
TCATCAAAGCAATTCACCATTTTACATGGATAGTGCAACTGACATTCTGA
ATAAAGTTTTTATTGGCACTGATAAAACAACATTCGTAACAAATTGCAAG
GATATCGCATACTTAGGAGCTAAGATATGGGAAAATGGGAAATGGAATTC
TTTTGCAGCTGATCAATTTGATAAGGAGAAAATCGGTAATCAATACTTAC
TGAAGATGGAACTTTTTTGTTTCAAAATGATTCTATTGCCGTGTATTCTG
CTGACTGTTTTTTTTTTCGGTGAAATGAAAGCGAACACTATAGAAGTGAA
CCGAAAAAATGGTTTATCCTTTGGAGATCTTTATGTTCCACCAGGTGGTA
TTGCAGAATGCTCAAGATACGGTGGTGTTGATTTTTTTTCGAGTTCTTGC
CAATGCAAAAATGCGCAAGGGATCTTGGGAACGTTCACAGATCAATGTGA
CTATGACTTGAAAACTAGCTCAGAATATACTACTGGAAATCTACCGCCCA
CAATACCCGCCACCACAACATCACAGCACACCAAAACAGGATTAACAGAT
CAACCAGCCACTCAAACGACAACTGCACCAAAGTGGATAAACGGCCAGCA
GCCAAATACTCAAGACTGGACAAAGTATGTTGGACAATTGTTTAGAATCA
ATCTCGGATGTTTACCATTGGAAGGAAATCAATTTCAACCCAACTGTTTA
TTGGTTAAAATAAAGGGGAAAAGAGGGTGCGAGTGGCAGATTCATCAAAG
CAATTCACCATTTTACATGGATAGTGCAACTGACATTCTGAATAAAGTTT
TTATTGGCACTGATAAAACAACATTCGTAACAAATTGCAAGGATATCGCA
TACTTAGGAGCTAAGATATGGGAAAATGGGAAATGGAATTCTTTTGCAGC
TGATCAATTTGATAAGGAGAAAATCGGTAATCAATACTTACTGAAGATGG
AACTTTTTTGTTTCAAAATGATTCTATTGCCGTGTATTCTGCTGACTGTT
TTTTTTTTCGGTGAAATGAAAGCGAACACTATAGAAGTGAACCGAAAAAA
TGGTTTATCCTTTGGAGATCTTTATGTTCCACCAGGTGGTATTGCAGAAT
GCTCAAGATACGGTGGTGTTGATTTTTTTTCGAGTTCTTGCCAATGCAAA
AATGCGCAAGGGATCTTGGGAACGTTCACAGATCAATGTGACTATGACTT
GAAAACTAGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070175-exon-scaffold_514-1575043694:132247..132875 | TCONS_00070175-exon-scaffold_514-1575043694:132247..132875 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1575043694:131765..131985 | TCONS_00070175-exon-scaffold_514-1575043694:131765..131985 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1575043694:130250..130391 | TCONS_00070175-exon-scaffold_514-1575043694:130250..130391 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1575043694:129629..129738 | TCONS_00070175-exon-scaffold_514-1575043694:129629..129738 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1510915933:132247..132875 | TCONS_00070175-exon-scaffold_514-1510915933:132247..132875 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1510915933:131765..131985 | TCONS_00070175-exon-scaffold_514-1510915933:131765..131985 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1510915933:130250..130391 | TCONS_00070175-exon-scaffold_514-1510915933:130250..130391 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1510915933:129629..129738 | TCONS_00070175-exon-scaffold_514-1510915933:129629..129738 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1491911889:132247..132875 | TCONS_00070175-exon-scaffold_514-1491911889:132247..132875 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1491911889:131765..131985 | TCONS_00070175-exon-scaffold_514-1491911889:131765..131985 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1491911889:130250..130391 | TCONS_00070175-exon-scaffold_514-1491911889:130250..130391 | Clytia hemisphaerica | exon |
| TCONS_00070175-exon-scaffold_514-1491911889:129629..129738 | TCONS_00070175-exon-scaffold_514-1491911889:129629..129738 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_514 | supercontig | scaffold_514:129629..132875 - |
Blast
The following BLAST results are available for this feature:
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