TCONS_00070177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070177
Unique NameTCONS_00070177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070177 ID=TCONS_00070177|Name=TCONS_00070177|organism=Clytia hemisphaerica|type=transcript|length=283bp
ACCGTCACCATATATTCGTTTCATTCTATGTGTTCGAAAGTTTGCAGCAT
TGCACACCTTGGCACTGTCTGCATCACCTGTTACAAGTTTACATGATAGA
TTTTCATCTGGTCTTCCGGGTTCTTCTGTAGAAAGTGTTGTTGGAGGTTT
TTGAGTTATTGTAGTCGTTGGTggcttttttgttgttgtcgtCGTGGTTG
TTGTTGATGGAGGAGGCGAGCCTGAGCAGCTATAGTTTACAatggtaaaa
ttgaaaatttatggTAAGACCTGACTAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_514:251703..252130-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070177 ID=TCONS_00070177|Name=TCONS_00070177|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at scaffold_514:251703..252130- (Clytia hemisphaerica)
ACCGTCACCATATATTCGTTTCATTCTATGTGTTCGAAAGTTTGCAGCAT
TGCACACCTTGGCACTGTCTGCATCACCTGTTACAAGTTTACATGATAGG
TATTCATCTGGTCTTCCGGGTTCTTCTGTAGAAAGTGTTGTTGGCGGTTT
TTGAGTTATTGTAGTCGTTGGTGGTTTTTTTGTTGTTGTCGGTCNTGCAC
ACCTTGGCACTGTCTGCATCACCTGTTACAAGTTTACATGATAGATTTTC
ATCTGGTCTTCCGGGTTCTTCTGTAGAAAGTGTTGTTGGAGGTTTTTGAG
TTATTGTAGTCGTTGGTGGCTTTTTTGTTGTTGTCGTCGTGGTTGTTGTT
GATGGAGGAGGCGAGCCTGAGCAGCTATAGTTTACAATGGTAAAATTGAA
AATTTATGGTAAGACCTGACTAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043704XLOC_043704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070177-exon-scaffold_514-1575043694:252032..252130TCONS_00070177-exon-scaffold_514-1575043694:252032..252130Clytia hemisphaericaexon
TCONS_00070177-exon-scaffold_514-1575043694:251703..251886TCONS_00070177-exon-scaffold_514-1575043694:251703..251886Clytia hemisphaericaexon
TCONS_00070177-exon-scaffold_514-1510915933:252032..252130TCONS_00070177-exon-scaffold_514-1510915933:252032..252130Clytia hemisphaericaexon
TCONS_00070177-exon-scaffold_514-1510915933:251703..251886TCONS_00070177-exon-scaffold_514-1510915933:251703..251886Clytia hemisphaericaexon
TCONS_00070177-exon-scaffold_514-1491911889:252032..252130TCONS_00070177-exon-scaffold_514-1491911889:252032..252130Clytia hemisphaericaexon
TCONS_00070177-exon-scaffold_514-1491911889:251703..251886TCONS_00070177-exon-scaffold_514-1491911889:251703..251886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_514supercontigscaffold_514:251703..252130 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.247378	0	0	0	0.0403377	0.302401	2.8359	0.0357671	1.48306	0	0.46998	22.536	2.99444	0	2.27158e-06	0.0559534	0.396104	23.3585	90.8154	0	0	0	0	0	0	0	0	0	0.437099
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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