TCONS_00070190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070190
Unique NameTCONS_00070190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070190 ID=TCONS_00070190|Name=TCONS_00070190|organism=Clytia hemisphaerica|type=transcript|length=1145bp
CACTGGAACAGCTCTGCATGTCATTCTGGCATTGAAACTACTATCAGAGA
AATTCTAAAGAAAGTGTACATCATTAATGGCCGCTCGCTTGTCAAGCTAA
TCAAAAACATGCAGTTGTTTTATGTGGATGGAAAATCAAAGGCTGGGCGA
CCAGTGTTTTATTATATCGCACGAAAATATATTAACGATCAAGTTTCGGA
CGAGATGCTCTTATACCACATGTTGTTGACATTACAATCGAAACGGAATC
AAATCTGGGAACTGGTTGTAGATTTTACACATTCTTCTGAACAAAATTGG
TTCAAGATCGAGACTTTGGCAAGGGCGTTCGTCATTCTACCAGAGAGCCA
AGTGACTTCACCGCAAACCATTTATTTTTACAATGTCAATTCTTCAGTAA
AACAATATGCTATCCGCTGTGATCGTATTATGAGGCCTCTAAAGAACCAT
CCTCAAGAAGCAGATTGAAGCCATCATGGGACCAATTCCACCTTCAAGTC
TAACAGTTGCTCCGGCATTTTATAACTCACAGATCGACCTCAGTGGACCA
TATCAATCATTTTCACCTTCACACAAGCGAACAACAGTAAAGATACGACG
TTATATTGTCTACCATGCTGGATCATTCGATGGACGACTTTGAAGGAAGA
ATTATTTTGGAAGTTTTGGCTGAAGCTTCATCACTTTATACAGATATATT
CCCTGTAACGTTTTCAATACTGCATCGTAAGCTGTGCAACGTTCTTACGC
ATTCAGAAGATCAGGAAACCCTAACAGCAGCTCAAAAGATTGTACACTGT
CAATACTTTACAATCATCTCTCTTGGAATATCGAAATGACATCGCATACC
ATTGGATTTTTAAACAACTTGATCATATTTGTGGATTGAGCTTCTCTTCC
TCCTTCGACTTCGCGCTCGCTGCGCTATTACTCAAAGGTTTACGTCATCC
ATCTGCGAAAACGAAGTCGTCGGCTATCAGGATATTGCATTACCTACTGA
CCATATGTTCCAAAGCTCAAGGGACCAAAGAAAAGTTTGAAGTAAACAAA
CACACTGTACCATACTTAGCAGTACTAATGTCATtgatagtcaggtagaa
ttgcataactacccagacaaaaatggtgcagagatgaaattttgc
Run BLAST on NCBI

protein sequence of TCONS_00070190-protein

>TCONS_00070190-protein ID=TCONS_00070190-protein|Name=TCONS_00070190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
HWNSSACHSGIETTIREILKKVYIINGRSLVKLIKNMQLFYVDGKSKAGR
PVFYYIARKYINDQVSDEMLLYHMLLTLQSKRNQIWELVVDFTHSSEQNW
FKIETLARAFVILPESQVTSPQTIYFYNVNSSVKQYAIRCDRIMRPLKNH
PQEAD
Run BLAST on NCBI

transcript from alignment at scaffold_515:32720..33864

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070190 ID=TCONS_00070190|Name=TCONS_00070190|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at scaffold_515:32720..33864 (Clytia hemisphaerica)
gcaaaatttcatctctgcaccatttttgtctgggtagttatgcaattcta
cctgactatcaATGACATTAGTACTGCTAAGTATGGTACAGTGTGTTTGT
TTACTTCAAACTTTTCTTTGGTCCCTTGAGCTTTGGAACATATGGTCAGT
AGGTAATGCAATATCCTGATAGCCGACGACTTCGTTTTCGCAGATGGATG
ACGTAAACCTTTGAGTAATAGCGCAGCGAGCGCGAAGTCGAAGGAGGAAG
AGAAGCTCAATCCACAAATATGATCAAGTTGTTTAAAAATCCAATGGTAT
GCGATGTCATTTCGATATTCCAAGAGAGATGATTGTAAAGTATTGACAGT
GTACAATCTTTTGAGCTGCTGTTAGGGTTTCCTGATCTTCTGAATGCGTA
AGAACGTTGCACAGCTTACGATGCAGTATTGAAAACGTTACAGGGAATAT
ATCTGTATAAAGTGATGAAGCTTCAGCCAAAACTTCCAAAATAATTCTTC
CTTCAAAGTCGTCCATCGAATGATCCAGCATGGTAGACAATATAACGTCG
TATCTTTACTGTTGTTCGCTTGTGTGAAGGTGAAAATGATTGATATGGTC
CACTGAGGTCGATCTGTGAGTTATAAAATGCCGGAGCAACTGTTAGACTT
GAAGGTGGAATTGGTCCCATGATGGCTTCAATCTGCTTCTTGAGGATGGT
TCTTTAGAGGCCTCATAATACGATCACAGCGGATAGCATATTGTTTTACT
GAAGAATTGACATTGTAAAAATAAATGGTTTGCGGTGAAGTCACTTGGCT
CTCTGGTAGAATGACGAACGCCCTTGCCAAAGTCTCGATCTTGAACCAAT
TTTGTTCAGAAGAATGTGTAAAATCTACAACCAGTTCCCAGATTTGATTC
CGTTTCGATTGTAATGTCAACAACATGTGGTATAAGAGCATCTCGTCCGA
AACTTGATCGTTAATATATTTTCGTGCGATATAATAAAACACTGGTCGCC
CAGCCTTTGATTTTCCATCCACATAAAACAACTGCATGTTTTTGATTAGC
TTGACAAGCGAGCGGCCATTAATGATGTACACTTTCTTTAGAATTTCTCT
GATAGTAGTTTCAATGCCAGAATGACATGCAGAGCTGTTCCAGTG

Coding sequence (CDS) from alignment at scaffold_515:32720..33864

>TCONS_00070190 ID=TCONS_00070190|Name=TCONS_00070190|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_515:32720..33864 (Clytia hemisphaerica)
TCAATCTGCTTCTTGAGGATGGTTCTTTAGAGGCCTCATAATACGATCAC
AGCGGATAGCATATTGTTTTACTGAAGAATTGACATTGTAAAAATAAATG
GTTTGCGGTGAAGTCACTTGGCTCTCTGGTAGAATGACGAACGCCCTTGC
CAAAGTCTCGATCTTGAACCAATTTTGTTCAGAAGAATGTGTAAAATCTA
CAACCAGTTCCCAGATTTGATTCCGTTTCGATTGTAATGTCAACAACATG
TGGTATAAGAGCATCTCGTCCGAAACTTGATCGTTAATATATTTTCGTGC
GATATAATAAAACACTGGTCGCCCAGCCTTTGATTTTCCATCCACATAAA
ACAACTGCATGTTTTTGATTAGCTTGACAAGCGAGCGGCCATTAATGATG
TACACTTTCTTTAGAATTTCTCTGATAGTAGTTTCAATGCCAGAATGACA
TGCAGAGCTGTTCCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043717XLOC_043717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070190-exon-scaffold_515-1491911889:32720..33864TCONS_00070190-exon-scaffold_515-1491911889:32720..33864Clytia hemisphaericaexon
TCONS_00070190-exon-scaffold_515-1510915933:32720..33864TCONS_00070190-exon-scaffold_515-1510915933:32720..33864Clytia hemisphaericaexon
TCONS_00070190-exon-scaffold_515-1575043694:32720..33864TCONS_00070190-exon-scaffold_515-1575043694:32720..33864Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070190-proteinTCONS_00070190-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_515supercontigscaffold_515:32720..33864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.751528	1.2359	0.592667	0.664357	5.36891	2.55948	4.1719	4.573	2.52905	2.99852	3.59413	3.30945	3.26765	2.95875	2.487	3.08518	3.48732	4.51987	2.45778	2.91262	3.99145	3.24326	1.73595	3.09653	2.61767	4.85251	3.44679	3.49672	1.9369	1.62798
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Blast
[Close]
BLAST of TCONS_00070190 vs. Swiss-Prot (Human)
Match: NF1 (Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.124e-22
Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:   94 KLIKNMQLFYVDGKSKAGRPVFYYIARKYINDQVSDEMLLYHMLLTLQSKRNQIWELVVDFTHSSEQNWFKIETLARAFVILPESQVTSPQTIYFYNVNSSVKQYAIRCDRIMRPLKN 447
            K +K + +FY  G SKAG P+FYY+AR++   Q++ ++L+YH+LLTL+    + +E+VVD TH+   N FK + L++ FV+ P     +   +Y YN NS V++Y    +R++  LK 
Sbjct: 1585 KALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKG 1702
The following BLAST results are available for this feature:
BLAST of TCONS_00070190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NF11.124e-2238.98Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2[more]
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