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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070246 ID=TCONS_00070246|Name=TCONS_00070246|organism=Clytia hemisphaerica|type=transcript|length=587bp
GTCTGGAATTTAATACCTTTTTGAAACCCAGTTTCCAAACATTGAAACCG
TATAAATAGGGGATTCATTTGAAGGAAGAACATCATCACCGCTTCTATTT
CTTTTCTGTTGTGAGTATCATCATAATAAAGAAGTCAAAATGAAGATTGC
TTTACTTTTCCTTTTCGTTGCCGTAGCTTTTGCTGAAATACCTTTTGATG
aaatcgaagaagaagaaggatcAGGCCACGTCAGtTGTCGTCACGAATTC
CGTGAATGTGCAAAGGACGCCGAAGGAGACCGTCAAAAATTCTATGTCTG
TTTGgccaaatattttggatgtaaACATGATGAACGAATGGAAAAGATCA
AACACTGCATCCACAGATGTTACCAAGAGCGCCAGACTTGCCGTAGCTTC
CGATTTATCTGTGACATGAGACTCCGACATTGCAAATACAACTGCTACAA
CATGAGAAGATCAGAAGAATAAGATGATCAAAATATATTCTACgtatttc
atgaatttttttaaatttgtcgtgaaaaaagaagaaaatgaatttattCC
AAGAACATAGATTTTAATTGTCACTTCATCTAATGAC Run BLAST on NCBI protein sequence of TCONS_00070246-protein >TCONS_00070246-protein ID=TCONS_00070246-protein|Name=TCONS_00070246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MKIALLFLFVAVAFAEIPFDEIEEEEGSGHVSCRHEFRECAKDAEGDRQK
FYVCLAKYFGCKHDERMEKIKHCIHRCYQERQTCRSFRFICDMRLRHCKY
NCYNMRRSEE Run BLAST on NCBI transcript from alignment at scaffold_516:369516..371294- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070246 ID=TCONS_00070246|Name=TCONS_00070246|organism=Clytia hemisphaerica|type=transcript|length=1779bp|location=Sequence derived from alignment at scaffold_516:369516..371294- (Clytia hemisphaerica)
GTCTGGAATTTAATACCTTTTTGAAACCCAGTTTCCAAACATTGAAACCG
TATAAATAGGGGATTCATTTGAAGGAAGAACATCATCACCGCTTCTATTT
CTTTTCTGTTGTGAGTATCATCATAATAAAGAAGTCAAAATGAAGATTGC
TTTACTTTTCCTTTTCGTTGCCGTAGCTTTTGCTGAAATACCTTTTGATG
GTAAGTTGGTACTCTATTTTTCATCTGTCTCAGGTCCATTTAGCTTCAAG
TCTACTCTTTAACCCGAATGGATTTGTACTGTAGTGTTATCCTGACGAAA
TAAGATCTTCTACAGATCGCTGACGCTGTTTCAACGTACATCTTACATTA
TATGGATGTTTTGTAAGTTGTAGTGTTTGACTGTTGATCTATGAAGAGTC
TTTGGAAAGAGGATTTTATCAGATATTTCAAAAGCTTTTCATATGAGAAA
TCATTTAAAACTCGTTTTTCATTTTCCAATAGAAATCGAAGAAGAAGAAG
GATCAGGCCACGTCAGTGTAAGTACAATTTCCAAACCTCTCGGTCCTGCT
TTTCAAAAAAATTGACACTAACAAGTGTTTAAAATTCAAATTAGTCAGAA
ATTTTATCACTTGCACTATAATATGCGAATGAAGGGAGTGACTACTGGTT
AATTTCACAACACGAGAAACGATGGGTGTCATTATACCACCATATAATGG
GGCTGTCCCGTTAAATATCCAAGGGATAGTCTTATCTGGTAAACGATGCT
CATTCATCTAATTATCCTTACAAAAAACTGATTTAGACCAAACTTATACC
ACAATTCCAAAGACTTTCATAACACCCTCTTGAAATTCTTCTCGGAAAAA
CACCCTGAAAATGTCCATTCCACCTTTTACGAATACCAAATGGAACCTGA
TCTAATTTAATGACATCATCTTTATTGTCATGTAGTGTCGTCACGAATTC
CGTGAATGTGCAAAGGACGCCGAAGGAGACCGTCAAAAATTCTATGTCTG
TTTGGCCAAATATTTTGGATGTAAACATGATGAACGAATGGAAAAGATCA
AACACTGCATCCACAGAGTAAGCGAAACCTTTTTTTAAAAAAGATACCTT
AGCACCGAGTTCTTTGAATGGAAAATTACGTTTTCTACTCTACTAGTATT
AACCCCTCAGCTGAGAAAATCACATATCACATATCAGTACTCTTAAAGAA
AATACAAATCACTTTTGCTGAATATTAAGTTTTAAAGTAAGTAATCCTTC
AAGTAAATTTAAAATGTTTTTAAGCCCCTACCATTTTCTAAACGAATACA
ACTTTTCGAGTGCCACTTTATTATTAAATTATTAAATTATCCCTGAATTC
GATCCAATCCTTTTTTTACACCTTTTTCTATTGTATATAGGTGCGAAAAA
AAGGCTGAGACGGTTTTAGGGTGGTAAAACCGGCAAAAGAATGCCCACGC
GGCAATAGGCGGCGGCTACGTACGAAAATTATTTAGTACGGAAGTCACAC
ACGAAAAAACATCGCTAACATTGCCCTTATTTATTCTAAAGTTTTTTTTT
CGCTTTTAGTGTTACCAAGAGCGCCAGACTTGCCGTAGCTTCCGATTTAT
CTGTGACATGAGACTCCGACATTGCAAATACAACTGCTACAACATGAGAA
GATCAGAAGAATAAGATGATCAAAATATATTCTACGTATTTCATGAATTT
TTTTAAATTTGTCGTGAAAAAAGAAGAAAATGAATTTATTCCAAGAACAT
AGATTTTAATTGTCACTTCATCTAATGAC Coding sequence (CDS) from alignment at scaffold_516:369516..371294- >TCONS_00070246 ID=TCONS_00070246|Name=TCONS_00070246|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_516:369516..371294- (Clytia hemisphaerica)
TGTTACCAAGAGCGCCAGACTTGCCGTAGCTTCCGATTTATCTGTGACAT
GAGACTCCGACATTGCAAATACAACTGCTACAACATGAGAAGATCAGAAG
AATAATGTCGTCACGAATTCCGTGAATGTGCAAAGGACGCCGAAGGAGAC
CGTCAAAAATTCTATGTCTGTTTGGCCAAATATTTTGGATGTAAACATGA
TGAACGAATGGAAAAGATCAAACACTGCATCCACAGAAAATCGAAGAAGA
AGAAGGATCAGGCCACGTCAGTATGAAGATTGCTTTACTTTTCCTTTTCG
TTGCCGTAGCTTTTGCTGAAATACCTTTTGATGTGTTACCAAGAGCGCCA
GACTTGCCGTAGCTTCCGATTTATCTGTGACATGAGACTCCGACATTGCA
AATACAACTGCTACAACATGAGAAGATCAGAAGAATAATGTCGTCACGAA
TTCCGTGAATGTGCAAAGGACGCCGAAGGAGACCGTCAAAAATTCTATGT
CTGTTTGGCCAAATATTTTGGATGTAAACATGATGAACGAATGGAAAAGA
TCAAACACTGCATCCACAGAAAATCGAAGAAGAAGAAGGATCAGGCCACG
TCAGTATGAAGATTGCTTTACTTTTCCTTTTCGTTGCCGTAGCTTTTGCT
GAAATACCTTTTGATGTGTTACCAAGAGCGCCAGACTTGCCGTAGCTTCC
GATTTATCTGTGACATGAGACTCCGACATTGCAAATACAACTGCTACAAC
ATGAGAAGATCAGAAGAATAATGTCGTCACGAATTCCGTGAATGTGCAAA
GGACGCCGAAGGAGACCGTCAAAAATTCTATGTCTGTTTGGCCAAATATT
TTGGATGTAAACATGATGAACGAATGGAAAAGATCAAACACTGCATCCAC
AGAAAATCGAAGAAGAAGAAGGATCAGGCCACGTCAGTATGAAGATTGCT
TTACTTTTCCTTTTCGTTGCCGTAGCTTTTGCTGAAATACCTTTTGATGT
GTTACCAAGAGCGCCAGACTTGCCGTAGCTTCCGATTTATCTGTGACATG
AGACTCCGACATTGCAAATACAACTGCTACAACATGAGAAGATCAGAAGA
ATAATGTCGTCACGAATTCCGTGAATGTGCAAAGGACGCCGAAGGAGACC
GTCAAAAATTCTATGTCTGTTTGGCCAAATATTTTGGATGTAAACATGAT
GAACGAATGGAAAAGATCAAACACTGCATCCACAGAAAATCGAAGAAGAA
GAAGGATCAGGCCACGTCAGTATGAAGATTGCTTTACTTTTCCTTTTCGT
TGCCGTAGCTTTTGCTGAAATACCTTTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070246-exon-scaffold_516-1575043694:371095..371294 | TCONS_00070246-exon-scaffold_516-1575043694:371095..371294 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1575043694:370778..370812 | TCONS_00070246-exon-scaffold_516-1575043694:370778..370812 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1575043694:370228..370359 | TCONS_00070246-exon-scaffold_516-1575043694:370228..370359 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1575043694:369516..369735 | TCONS_00070246-exon-scaffold_516-1575043694:369516..369735 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1510915933:371095..371294 | TCONS_00070246-exon-scaffold_516-1510915933:371095..371294 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1510915933:370778..370812 | TCONS_00070246-exon-scaffold_516-1510915933:370778..370812 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1510915933:370228..370359 | TCONS_00070246-exon-scaffold_516-1510915933:370228..370359 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1510915933:369516..369735 | TCONS_00070246-exon-scaffold_516-1510915933:369516..369735 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1491911889:371095..371294 | TCONS_00070246-exon-scaffold_516-1491911889:371095..371294 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1491911889:370778..370812 | TCONS_00070246-exon-scaffold_516-1491911889:370778..370812 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1491911889:370228..370359 | TCONS_00070246-exon-scaffold_516-1491911889:370228..370359 | Clytia hemisphaerica | exon |
| TCONS_00070246-exon-scaffold_516-1491911889:369516..369735 | TCONS_00070246-exon-scaffold_516-1491911889:369516..369735 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:369516..371294 - |
Blast
The following BLAST results are available for this feature:
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