TCONS_00070251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070251
Unique NameTCONS_00070251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070251 ID=TCONS_00070251|Name=TCONS_00070251|organism=Clytia hemisphaerica|type=transcript|length=832bp
caaaggtggaaaaatttagaaaattaaattattccTGAACGGTGGACCGG
TAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTACACAATTT
TATGATGTCTTtcttgattgaaaatttgttgaaagataagAGCAGTGAAA
GGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTGCTACTCCA
ACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGattTATCAGACATCGA
ACTTTCCAGTGTGGACGAAGATGATTTACAAGACTCATATTCAAAGAAAC
GAAGGATACTTTTCACACGTCAACAGACATGGGAACTGGAAAGAATTTTT
CGACAACAACCTTACTTATCTTCACCAGAACGTGAAGTATTagcaaagaa
aatcaacttgACTCCAACGCAAATTAAGATATGGTTTCAGAATCATAGat
acaaaatgaagaaataCATGAAGGACATGATTCAACAAGCTGAATATGAA
TGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCACTCACCACATCG
GAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCACAGATCCTCAT
ACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCTTTCATCGCCCC
CGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACGCCCTCCTCGTC
AATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGAATCGCCCCGTA
AATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCTCTTTATCACTT
TCTACTTCTACTGATAAACTTGTTTTCAACTT
Run BLAST on NCBI

transcript from alignment at scaffold_516:398517..401902-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070251 ID=TCONS_00070251|Name=TCONS_00070251|organism=Clytia hemisphaerica|type=transcript|length=3386bp|location=Sequence derived from alignment at scaffold_516:398517..401902- (Clytia hemisphaerica)
CAAAGGTGGAAAAATTTAGAAAATTAAATTATTCCTGAACGGTGGACCGG
TAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTACACAATTT
TATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAGCAGTGAAA
GGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTGCTACTCCA
ACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGGTAAGTTTTGTGACTT
TTGTGACTTTTTTTGACGAAATTGGTTTTTAGAATGCATAATGGTTCTCG
AAATTTGTTCTCTAAATGCATTTTGAANATTAAATCAAAAGTTGAAGATT
AATAAAAAATCTACTGTCTACCTACCCACTTGTTTTTTTCAAAAACTTTC
CATTTATCAGCAGTTTACTCTGATATTTTAATGAAATTTTACTCTATTTC
ATTGAATTTTGTTTTGTATAGGGATTAGTACAAGTGCCAAGGAAATCAGT
GATCAACGCTTGCCAATTTTTCTGATACACCAGTCTCCTCTTGAAAAAAT
TGTCAACAACTTTAATCGAGTTAACCCTGTATCACTTTTTAAAACTTTAA
AAGTCGGCTTCTGATTGGTTTATAGAACTATTGATAGGACGTGATTGTCC
AATAGGATTGTATCTTGCTTCATTCCCAGTCATTCACAAGAAAAGTTTGA
CGTAAGTGTGAAAAACATCCTAATCCAATTTTTGCGATAAAAAATCTAGC
GCATCCTGATAATTGAAAAGACAAAAATCAACTTAATTACTCATTTAATT
TCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGA
ATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAA
AAATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGA
ATAAAAAAATTAACAGGAAATCTTAACATTAATAACAATTAATTTTATTA
TCTGATATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGTCAACTTT
ATGATATTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAAAGGGCCA
CCTGCTGGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTTATAATAC
TTCAACTATCATCCACTCTGGATTAAGATACAGTAAGGCACATGAATAAA
AATCATTTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTCACCGTAC
TTGACAATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGATTACGGA
TATTAGTAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTTCAAAAGC
AGTCACATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAAAGAAATG
TAAGGATCACTTGCAGAGGCTATTGTAAACACACAGGAAACTCTCGAAAG
ATATTTTAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGTTGACACG
TCAATAAAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTAATTGTTA
TCAATTCCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATTTGATGTT
TGTCATCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTATTCCTGA
ACGGTGGACCGGTAAGAACACTAATCCGAAATCAAGACATAGTTATAAAC
AGTACACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATA
AGAGCAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCA
CCTGCTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGGTAA
GTTTTGTGACTTNTCTAGCGCATTCTGATAACTGAAAAGACAAAAATCAA
CTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATTTCAAAAA
TTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGAATCAAGG
TGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAAAAATTGA
ATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGAATAAAAA
AATTAACAGGANCATTCTCTACCGATATATGCTTCAACATCAGAGTCCTA
TAAAAATTGTACTGTCAATGATGGAGAATTTAAAAACGAATGCGGGTTCA
GCCTGCACATTGATAGTTGTGGTAGCAAGAATTTTTTGGTTTCATTTTTC
TGAAGTATAGATACTAACAAGAAGGAAAATATCAGTATATCATTACACCA
TTCACCTTTTCGATTTTCATACAAAGGAATACCCTTTCTTCGCTTTTTAT
GATTCTTATAGCACTCACGATTGTATCACGTCCATAAGTAAAATCAAAAA
GTGGTGCAAGTGACTCTGGTTAGTTTGCGAGATTGAAAATTACAGAGTTC
TAAATTCTTAATATTTTTAAATTTAGATTTATCAGACATCGAACTTTCCA
GTGTGGACGAAGATGATTTACAAGACTCATATTCAAAGAAACGAAGGATA
CTTTTCACACGTCAACAGACATGGGAACTGGAAAGAATTTTTCGACAACA
ACCTTACTTATCTTCACCAGAACGTGAAGTATTAGCAAAGAAAATCAACT
TGACTCCAACGCAAATTAAGATATGGTTTCAGAATCATAGGTATGTAGCG
TCAGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCCCACAGCGTTGT
TTCAACATTCATCTAACGTTGGACGGGGTTACAGATATTAGATAGATTTT
GATGGTAATATCAATCTCCATCAAGTTTCAGTCCGTTATTTTTACCCCAA
CTGACTGAAAAAATCCTACTGGATCTGTGAAAAGGGGGTGTATTAATATA
GTATGTATTAATTCAAATTATAAATTTTTATATTTGAAAATTTTAAGAAA
TTAAATCAATTATTTTCAAATGATGAATAATTTTTCTTAATATTTTTCAT
AGATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAGCTGAATA
TGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCACTCACCAC
ATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCACAGATCC
TCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCTTTCATCG
CCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACGCCCTCCT
CGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGAATCGCCC
CGTAAATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCTCTTTATC
ACTTTCTACTTCTACTGATAAACTTGTTTTCAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043740XLOC_043740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070251-exon-scaffold_516-1575043694:401669..401902TCONS_00070251-exon-scaffold_516-1575043694:401669..401902Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1575043694:399213..399426TCONS_00070251-exon-scaffold_516-1575043694:399213..399426Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1575043694:398517..398900TCONS_00070251-exon-scaffold_516-1575043694:398517..398900Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1510915933:401669..401902TCONS_00070251-exon-scaffold_516-1510915933:401669..401902Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1510915933:399213..399426TCONS_00070251-exon-scaffold_516-1510915933:399213..399426Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1510915933:398517..398900TCONS_00070251-exon-scaffold_516-1510915933:398517..398900Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1491911889:401669..401902TCONS_00070251-exon-scaffold_516-1491911889:401669..401902Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1491911889:399213..399426TCONS_00070251-exon-scaffold_516-1491911889:399213..399426Clytia hemisphaericaexon
TCONS_00070251-exon-scaffold_516-1491911889:398517..398900TCONS_00070251-exon-scaffold_516-1491911889:398517..398900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:398517..401902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00197714	0	0	0	0.12137	0.000388837	6.72018e-07	1.99824	1.95938	0	0.874528	1.73157	2.20821	0	0	1.73746	0.243683	1.12266	1.87115	1.05734	0.0388464	0.200746	0	0.780232	1.21168	0	0	0	0
Blast
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BLAST of TCONS_00070251 vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.562e-23
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 3 
Query:  294 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 476
            +KRR+LF++ Q +ELER F+QQ YLS+PERE LA  I+LTPTQ+KIWFQNHRYKMK+  KD
Sbjct:  162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
BLAST of TCONS_00070251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX215.562e-2368.85Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1... [more]
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