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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070253 ID=TCONS_00070253|Name=TCONS_00070253|organism=Clytia hemisphaerica|type=transcript|length=1185bp
TTCTAAAATAAAAAGGGcataattttcaagaatttttcaatttaaattgg
gaacttgaagagtcagaaaattAAACGGTCATTACAAACATCGAAAACTT
TTGGTATCAAAACATGCTAGTCATTTACAGTCTTCTTTCCTTCCTTTGTT
GTATTGCAATGTCATCCCAACAAGCACCGTCTTCAACTTTCTTCAAAAGT
CGCTTCACAGGATTATTCAAACAACAAAACtctcaacaaaaacaacaaca
gcaacaacaacaacaacaacaacagcaactaACACTACAGGATTTACAAA
GATTCCGAAAACCTGATCAAAGGTTACAAATTGGAGATACACAACAAATT
CTTCTAGATGATGAGAAACAACCGTTAATCCAACAGTTATCCACAGTTAA
ATCAAAGAATGCAAATTCACCACAATTCGTACAACCATTAAAAAAGAAGC
AACGCACAGATCCAACTCTAGTGGTAGCTTCCAAACGAGCTGGTCCGACC
TGTCGCCAATACTGTGAAAGTCTATACGATCAATGTCTTTCTATAGTTTA
CCGTATCCCAGGGCAGCTGGTGTGTCTCAACAGCGTACATAGGTGTCGAA
GGGGGTGTACGAAACGAGTCCAAGACATGATGAAGTCCAATGATTTCTTT
TCATCTTCCACTACGACCAAAAGCATCCTGGTTCGTAAGAATGACAAGCA
TCGAGTCACTTTCAATCAAGCTGCTGTTGGCAGAAAAAATACTGGACGCA
AAATATTTTAATGTCAGGAAACTTTTAAGTAAACTCGACTTTTTTTGGTG
AATATGTGAGATTCATCTAAATTAAATATACACTTTGTAGGGATTTTTAG
CATGTTGTTTTTGTAGCTAAAGGACGAAAGAGGGGTGTCAACCGGAAAAA
TTAATTCGTCGAATTTGTTTGTCCCAACTAATAAATTGCAACGAATAAAA
AATCTATTGCGAATATTAAATAACGATTTAAAaagcagaaaatttttttt
tcttcaaggtTATTCGATTGAGTGCTGAGAAGCTCTACTGGGTAACTTAG
CTATCCATTATCAAATTTTGGCAACAGTTCAAAATGTggataagaaaaat
ttttgaatggtAAAATACTACTTAAGGAACTTAAGGAACAGTTGCAGGTT
TATgaacagtagcgtggtgggtcgactaaaCCTGG Run BLAST on NCBI protein sequence of TCONS_00070253-protein >TCONS_00070253-protein ID=TCONS_00070253-protein|Name=TCONS_00070253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MLVIYSLLSFLCCIAMSSQQAPSSTFFKSRFTGLFKQQNSQQKQQQQQQQ
QQQQQLTLQDLQRFRKPDQRLQIGDTQQILLDDEKQPLIQQLSTVKSKNA
NSPQFVQPLKKKQRTDPTLVVASKRAGPTCRQYCESLYDQCLSIVYRIPG
QLVCLNSVHRCRRGCTKRVQDMMKSNDFFSSSTTTKSILVRKNDKHRVTF
NQAAVGRKNTGRKIF Run BLAST on NCBI transcript from alignment at scaffold_516:412387..414037- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070253 ID=TCONS_00070253|Name=TCONS_00070253|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at scaffold_516:412387..414037- (Clytia hemisphaerica)
TTCTAAAATAAAAAGGGCATAATTTTCAAGAATTTTTCAATTTAAATTGG
GAACTTGAAGAGTCAGAAAATTAAACGGTCATTACAAACATCGAAAACTT
TTGGTATCAAAACATGCTAGTCATTTACAGTAAGTCTTTTTACTCGTGTG
TTGTTTTTATTATTTACACAATTTTTTAGAATTTATTTTTGGTCAAAGGC
TTACATACAGAAATGAACCTCGCTCTTAACCACAAGAGACATAACAAACC
TAAATCTTGTTACAACAACATTCAAAGTAGATGTAGGGGGATAGTAAGCA
CATAATTTAGCCCTGTTGGCAGTACAGTGTCTGAATCGTAGACCTCTGAA
AAGCCGCATATATTATAAAATCACGAATTTGTTAGTCGATGCCAGCAACC
TAGCAGTATATGAAAACCAAACAGTGGTGGAGTTAAAAAAAATAACTGTC
AACCATCATTATTTTAGTCCCGGGGTGCATTTCTTTTTTCAAAAGTTATC
TCACTTCTTAAATCATCTCCTCTCAGGGACCCCATGCAAAGGTCTGTTCC
GTTTAATTTATTCTGATTTTTACTATGCATTTATTTCTCGTACAGGTCTT
CTTTCCTTCCTTTGTTGTATTGCAATGTCATCCCAACAAGCACCGTCTTC
AACTTTCTTCAAAAGTCGCTTCACAGGATTATTCAAACAACAAAACTCTC
AACAAAAACAACAACAGCAACAACAACAACAACAACAACAGCAACTAACA
CTACAGGATTTACAAAGATTCCGAAAACCTGATCAAAGGTTACAAATTGG
AGATACACAACAAATTCTTCTAGATGATGAGAAACAACCGTTAATCCAAC
AGTTATCCACAGTTAAATCAAAGAATGCAAATTCACCACAATTCGTACAA
CCATTAAAAAAGAAGCAACGCACAGATCCAACTCTAGTGGTAGCTTCCAA
ACGAGCTGGTCCGACCTGTCGCCAATACTGTGAAAGTCTATACGATCAAT
GTCTTTCTATAGTTTACCGTATCCCAGGGCAGCTGGTGTGTCTCAACAGC
GTACATAGGTGTCGAAGGGGGTGTACGAAACGAGTCCAAGACATGATGAA
GTCCAATGATTTCTTTTCATCTTCCACTACGACCAAAAGCATCCTGGTTC
GTAAGAATGACAAGCATCGAGTCACTTTCAATCAAGCTGCTGTTGGCAGA
AAAAATACTGGACGCAAAATATTTTAATGTCAGGAAACTTTTAAGTAAAC
TCGACTTTTTTTGGTGAATATGTGAGATTCATCTAAATTAAATATACACT
TTGTAGGGATTTTTAGCATGTTGTTTTTGTAGCTAAAGGACGAAAGAGGG
GTGTCAACCGGAAAAATTAATTCGTCGAATTTGTTTGTCCCAACTAATAA
ATTGCAACGAATAAAAAATCTATTGCGAATATTAAATAACGATTTAAAAA
GCAGAAAATTTTTTTTTCTTCAAGGTTATTCGATTGAGTGCTGAGAAGCT
CTACTGGGTAACTTAGCTATCCATTATCAAATTTTGGCAACAGTTCAAAA
TGTGGATAAGAAAAATTTTTGAATGGTAAAATACTACTTAAGGAACTTAA
GGAACAGTTGCAGGTTTATGAACAGTAGCGTGGTGGGTCGACTAAACCTG
G Coding sequence (CDS) from alignment at scaffold_516:412387..414037- >TCONS_00070253 ID=TCONS_00070253|Name=TCONS_00070253|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_516:412387..414037- (Clytia hemisphaerica)
GTCTTCTTTCCTTCCTTTGTTGTATTGCAATGTCATCCCAACAAGCACCG
TCTTCAACTTTCTTCAAAAGTCGCTTCACAGGATTATTCAAACAACAAAA
CTCTCAACAAAAACAACAACAGCAACAACAACAACAACAACAACAGCAAC
TAACACTACAGGATTTACAAAGATTCCGAAAACCTGATCAAAGGTTACAA
ATTGGAGATACACAACAAATTCTTCTAGATGATGAGAAACAACCGTTAAT
CCAACAGTTATCCACAGTTAAATCAAAGAATGCAAATTCACCACAATTCG
TACAACCATTAAAAAAGAAGCAACGCACAGATCCAACTCTAGTGGTAGCT
TCCAAACGAGCTGGTCCGACCTGTCGCCAATACTGTGAAAGTCTATACGA
TCAATGTCTTTCTATAGTTTACCGTATCCCAGGGCAGCTGGTGTGTCTCA
ACAGCGTACATAGGTGTCGAAGGGGGTGTACGAAACGAGTCCAAGACATG
ATGAAGTCCAATGATTTCTTTTCATCTTCCACTACGACCAAAAGCATCCT
GGTTCGTAAGAATGACAAGCATCGAGTCACTTTCAATCAAGCTGCTGTTG
GCAGAAAAAATACTGGACGCAAAATATTTTAAATGCTAGTCATTTACAGT
CTTCTTTCCTTCCTTTGTTGTATTGCAATGTCATCCCAACAAGCACCGTC
TTCAACTTTCTTCAAAAGTCGCTTCACAGGATTATTCAAACAACAAAACT
CTCAACAAAAACAACAACAGCAACAACAACAACAACAACAACAGCAACTA
ACACTACAGGATTTACAAAGATTCCGAAAACCTGATCAAAGGTTACAAAT
TGGAGATACACAACAAATTCTTCTAGATGATGAGAAACAACCGTTAATCC
AACAGTTATCCACAGTTAAATCAAAGAATGCAAATTCACCACAATTCGTA
CAACCATTAAAAAAGAAGCAACGCACAGATCCAACTCTAGTGGTAGCTTC
CAAACGAGCTGGTCCGACCTGTCGCCAATACTGTGAAAGTCTATACGATC
AATGTCTTTCTATAGTTTACCGTATCCCAGGGCAGCTGGTGTGTCTCAAC
AGCGTACATAGGTGTCGAAGGGGGTGTACGAAACGAGTCCAAGACATGAT
GAAGTCCAATGATTTCTTTTCATCTTCCACTACGACCAAAAGCATCCTGG
TTCGTAAGAATGACAAGCATCGAGTCACTTTCAATCAAGCTGCTGTTGGC
AGAAAAAATACTGGACGCAAAATATTTTAAATGCTAGTCATTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070253-exon-scaffold_516-1575043694:413909..414037 | TCONS_00070253-exon-scaffold_516-1575043694:413909..414037 | Clytia hemisphaerica | exon |
| TCONS_00070253-exon-scaffold_516-1575043694:412387..413442 | TCONS_00070253-exon-scaffold_516-1575043694:412387..413442 | Clytia hemisphaerica | exon |
| TCONS_00070253-exon-scaffold_516-1510915933:413909..414037 | TCONS_00070253-exon-scaffold_516-1510915933:413909..414037 | Clytia hemisphaerica | exon |
| TCONS_00070253-exon-scaffold_516-1510915933:412387..413442 | TCONS_00070253-exon-scaffold_516-1510915933:412387..413442 | Clytia hemisphaerica | exon |
| TCONS_00070253-exon-scaffold_516-1491911889:413909..414037 | TCONS_00070253-exon-scaffold_516-1491911889:413909..414037 | Clytia hemisphaerica | exon |
| TCONS_00070253-exon-scaffold_516-1491911889:412387..413442 | TCONS_00070253-exon-scaffold_516-1491911889:412387..413442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:412387..414037 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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