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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070264 ID=TCONS_00070264|Name=TCONS_00070264|organism=Clytia hemisphaerica|type=transcript|length=2486bp AGAATTTACAACTTTGGGGACATTTAATTCTGTTTACATTGCGGTGCCTT TGAACGTTAGACGCGCGgaacaaaattttttgttccACGCGTCTAACAAA TTTTGNGTTATAACGAATGGTAAAACGAACGCCAACATTCGATACAAACT GAATTGCAATTCACATTCTTCAAAACTTTCATAATTTGATTCAGTTTTGG TAATGGGAAAACTTTCCATGAATTGCCAGGTCAGCAGAATGATCGTTTCC AGGGTAAGAATGAAAGTTGAAATTAAAATGTCGGCTAATGTATTGTTCTG TTTATTATTAACGAACTTCGAAATGAACCTGGAGACAGATCTGTTCTTCA ACAGAAGCACCAAGCTGAACAATGTTAATAAAGCATGGAAGGAAATATAT CGAATACGGCAAACTCCTCTAGAAGGTATCACCAAGTGTAGAAAGGTGTA ACTGAAGGATGCGATCACTAGCAGAGTAGACAATATGATGAATCTAGGCT TTGTTGATTTGACGATAGTAGTTTCCTTCAAATAGCGTAACAAGTAGAga cacaaaaacattaaaacgaTTCCTATACAGCTGATGATCGTTGTCGTAAG TCCAATAGTGTCCTTCAAAGTGATATGTTTAATCGGTGTCAATTCACAAT TTATAAAATCCTTAGTATGGTAACCCTCGGCACACGGTGAACATTGGAGA CTATTGGGTTTGGTGCTCATAGAACCTTTGGGACATCGTTCACATTTCCA ACAACAACGTTGTTTAGCCGTGATTTTTTCCCCTGCAACACATTTTTCAC TGCATGATGAAGTCGGCATTTCATTGCCCGACCAAGAGGGTATTCTAATC TTTGCTTTGTCAATATTGAGTCTCTTTTCTCTTTGAGATTCCCAGCGTCC AACAGGTCTGTATTTAAATTGGCCAGTGTTATTATTGTATTGAACTTGCT CGATGGAATAAGATACATATACAGGACTTCCTTTGGTATTATACTTGTAC GGTTTGTTTTGGCGAGTGGTAAAATCGACTGTTTTCAAAGCCTCGTTGAC TTGGATTGGGTTGATATTAGCTCCACAATTTGTTGCAGATGATGGACAGT ATTTTGATGTGACGTCATCTAACGCATGGCTGACTGAATCAACCAAATCG ATCAAATTATTAATTTGACTTGGATTTTCATTTAAGATTAGCTTCAAAAT CTCGTTACTCTCGATTTCACAAGTTTCATTGTTTGCATCTTTGCCAGTGA GTCTTCCAAAAGCATCATTGGAAGTCACTAAGCATCCAGATTGTTGGAAA ATATACTGTTTCAACCAAATATCCTTACCGTAGCACGAATTGATGGTTTT GTTAACATAGTCAAGAAACTCTTGATTTGGATTCCCATTCTCAACAGAGA CGGTCAGTATGGATTCCATTTGAGTTTTTGTTATGTTAGTAGCTGACAGC ACTTCAGGGTTCCAAGCTTCTCCTGTCAAATACAAACGATCCAAACCCAG TTTCTCAGCTTCATGCAAAATATATTCTCCAGACTTCAATGCATAATTAA ACATAACAACAACGGTGGCATTTTCTTGTTTCTGCATGTCTAAAGCGATC TCTTTCGCAATGCGTTGCGTGTCTTTGGAATCTATGGGAATATAAACTTC TCCTGTCAAACAGATATCCATTTTCTCTGTATGTTTTTGTAAAAGTTGAA GACCTATTTTCCCGTATTCATCATCGGCGCCTATGGCGTAGATGTAGGTC CATCCAAACTGATCGATAACGTCTACAAGAGCTTCTATGATACTTTCATC AGATGCAACACTTCTATAGAATGTCCCATGATCTGTACGTTTACTTAGAA GCGGTGATGAAGCACGATAACTAAGTAGCGGTATATGAAATGCTCCTAAC AAGCTTGATAGAGGGATTGTACTGAAGGAAAAGAAAGTTCCGAAAACTGC AACGAATTGTTCCGCGTGTGTCTTTTGTTGAGAAACGgaacaagtgtttt ggttggTAACCAGACAAGTTGTTTGTTCATGAGAATTGACAATCTCAATA CCTCGATTCATAGTGATTGGTAGATTTAAACAGGTGTCGTCGATTCGATA TCCGATACTTAGATCCGTAGCAACCTTTCTTGTTTCGATAGCAAATTTGA CGGCAAAGACACGAATTAAGCCTCCGATTGATNTCCGATACTTAGATTCG TCGCAACCTTTCTTGTTTCGATAGCAAATTTGACGGCAAAGACACGAATT AAGCCTCCGATTGATATTCGATCACATGGCTCGCCTTCAGTAAGGAAGTA CAAACTTTGGATCATGTATGTACCAGGTTTCCATGACGACAAGAGGTTTC GATTGTTTGTTTGAAATATCTCGTCATTACAGTCCTGATATGACGTAATC ACCAATGCCATGATTAgaaagaaaagtttcatttgatTCTTCATTCTTTG TCTTTTATCAACGATTAaactaaaacagaaaaaata Run BLAST on NCBI protein sequence of TCONS_00070264-protein >TCONS_00070264-protein ID=TCONS_00070264-protein|Name=TCONS_00070264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp
MNRGIEIVNSHEQTTCLVTNQNTCSVSQQKTHAEQFVAVFGTFFSFSTIP LSSLLGAFHIPLLSYRASSPLLSKRTDHGTFYRSVASDESIIEALVDVID QFGWTYIYAIGADDEYGKIGLQLLQKHTEKMDICLTGEVYIPIDSKDTQR IAKEIALDMQKQENATVVVMFNYALKSGEYILHEAEKLGLDRLYLTGEAW NPEVLSATNITKTQMESILTVSVENGNPNQEFLDYVNKTINSCYGKDIWL KQYIFQQSGCLVTSNDAFGRLTGKDANNETCEIESNEILKLILNENPSQI NNLIDLVDSVSHALDDVTSKYCPSSATNCGANINPIQVNEALKTVDFTTR QNKPYKYNTKGSPVYVSYSIEQVQYNNNTGQFKYRPVGRWESQREKRLNI DKAKIRIPSWSGNEMPTSSCSEKCVAGEKITAKQRCCWKCERCPKGSMST KPNSLQCSPCAEGYHTKDFINCELTPIKHITLKDTIGLTTTIISCIGIVL MFLCLYLLRYLKETTIVKSTKPRFIILSTLLVIASFSYTFLHLVIPSRGV CRIRYISFHALLTLFSLVLLLKNRSVSRFISKFVNNKQNNTLADILISTF ILTLETIILLTWQFMESFPITKTESNYESFEECELQFSLYRMLAFVLPFV IXQNLLDAWNKKFCSARLTFKGTAM Run BLAST on NCBI transcript from alignment at scaffold_516:293889..296374 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070264 ID=TCONS_00070264|Name=TCONS_00070264|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at scaffold_516:293889..296374 (Clytia hemisphaerica) tattttttctgttttagttTAATCGTTGATAAAAGACAAAGAATGAAGAa
tcaaatgaaacttttctttcTAATCATGGCATTGGTGATTACGTCATATC
AGGACTGTAATGACGAGATATTTCAAACAAACAATCGAAACCTCTTGTCG
TCATGGAAACCTGGTACATACATGATCCAAAGTTTGTACTTCCTTACTGA
AGGCGAGCCATGTGATCGAATATCAATCGGAGGCTTAATTCGTGTCTTTG
CCGTCAAATTTGCTATCGAAACAAGAAAGGTTGCGACGAATCTAAGTATC
GGANATCAATCGGAGGCTTAATTCGTGTCTTTGCCGTCAAATTTGCTATC
GAAACAAGAAAGGTTGCTACGGATCTAAGTATCGGATATCGAATCGACGA
CACCTGTTTAAATCTACCAATCACTATGAATCGAGGTATTGAGATTGTCA
ATTCTCATGAACAAACAACTTGTCTGGTTAccaaccaaaacacttgttcC
GTTTCTCAACAAAAGACACACGCGGAACAATTCGTTGCAGTTTTCGGAAC
TTTCTTTTCCTTCAGTACAATCCCTCTATCAAGCTTGTTAGGAGCATTTC
ATATACCGCTACTTAGTTATCGTGCTTCATCACCGCTTCTAAGTAAACGT
ACAGATCATGGGACATTCTATAGAAGTGTTGCATCTGATGAAAGTATCAT
AGAAGCTCTTGTAGACGTTATCGATCAGTTTGGATGGACCTACATCTACG
CCATAGGCGCCGATGATGAATACGGGAAAATAGGTCTTCAACTTTTACAA
AAACATACAGAGAAAATGGATATCTGTTTGACAGGAGAAGTTTATATTCC
CATAGATTCCAAAGACACGCAACGCATTGCGAAAGAGATCGCTTTAGACA
TGCAGAAACAAGAAAATGCCACCGTTGTTGTTATGTTTAATTATGCATTG
AAGTCTGGAGAATATATTTTGCATGAAGCTGAGAAACTGGGTTTGGATCG
TTTGTATTTGACAGGAGAAGCTTGGAACCCTGAAGTGCTGTCAGCTACTA
ACATAACAAAAACTCAAATGGAATCCATACTGACCGTCTCTGTTGAGAAT
GGGAATCCAAATCAAGAGTTTCTTGACTATGTTAACAAAACCATCAATTC
GTGCTACGGTAAGGATATTTGGTTGAAACAGTATATTTTCCAACAATCTG
GATGCTTAGTGACTTCCAATGATGCTTTTGGAAGACTCACTGGCAAAGAT
GCAAACAATGAAACTTGTGAAATCGAGAGTAACGAGATTTTGAAGCTAAT
CTTAAATGAAAATCCAAGTCAAATTAATAATTTGATCGATTTGGTTGATT
CAGTCAGCCATGCGTTAGATGACGTCACATCAAAATACTGTCCATCATCT
GCAACAAATTGTGGAGCTAATATCAACCCAATCCAAGTCAACGAGGCTTT
GAAAACAGTCGATTTTACCACTCGCCAAAACAAACCGTACAAGTATAATA
CCAAAGGAAGTCCTGTATATGTATCTTATTCCATCGAGCAAGTTCAATAC
AATAATAACACTGGCCAATTTAAATACAGACCTGTTGGACGCTGGGAATC
TCAAAGAGAAAAGAGACTCAATATTGACAAAGCAAAGATTAGAATACCCT
CTTGGTCGGGCAATGAAATGCCGACTTCATCATGCAGTGAAAAATGTGTT
GCAGGGGAAAAAATCACGGCTAAACAACGTTGTTGTTGGAAATGTGAACG
ATGTCCCAAAGGTTCTATGAGCACCAAACCCAATAGTCTCCAATGTTCAC
CGTGTGCCGAGGGTTACCATACTAAGGATTTTATAAATTGTGAATTGACA
CCGATTAAACATATCACTTTGAAGGACACTATTGGACTTACGACAACGAT
CATCAGCTGTATAGGAAtcgttttaatgtttttgtgtcTCTACTTGTTAC
GCTATTTGAAGGAAACTACTATCGTCAAATCAACAAAGCCTAGATTCATC
ATATTGTCTACTCTGCTAGTGATCGCATCCTTCAGTTACACCTTTCTACA
CTTGGTGATACCTTCTAGAGGAGTTTGCCGTATTCGATATATTTCCTTCC
ATGCTTTATTAACATTGTTCAGCTTGGTGCTTCTGTTGAAGAACAGATCT
GTCTCCAGGTTCATTTCGAAGTTCGTTAATAATAAACAGAACAATACATT
AGCCGACATTTTAATTTCAACTTTCATTCTTACCCTGGAAACGATCATTC
TGCTGACCTGGCAATTCATGGAAAGTTTTCCCATTACCAAAACTGAATCA
AATTATGAAAGTTTTGAAGAATGTGAATTGCAATTCAGTTTGTATCGAAT
GTTGGCGTTCGTTTTACCATTCGTTATAACNCAAAATTTGTTAGACGCGT
ggaacaaaaaattttgttcCGCGCGTCTAACGTTCAAAGGCACCGCAATG
TAAACAGAATTAAATGTCCCCAAAGTTGTAAATTCT Coding sequence (CDS) from alignment at scaffold_516:293889..296374 >TCONS_00070264 ID=TCONS_00070264|Name=TCONS_00070264|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_516:293889..296374 (Clytia hemisphaerica) ATGAATCGAGGTATTGAGATTGTCAATTCTCATGAACAAACAACTTGTCT GGTTAccaaccaaaacacttgttcCGTTTCTCAACAAAAGACACACGCGG AACAATTCGTTGCAGTTTTCGGAACTTTCTTTTCCTTCAGTACAATCCCT CTATCAAGCTTGTTAGGAGCATTTCATATACCGCTACTTAGTTATCGTGC TTCATCACCGCTTCTAAGTAAACGTACAGATCATGGGACATTCTATAGAA GTGTTGCATCTGATGAAAGTATCATAGAAGCTCTTGTAGACGTTATCGAT CAGTTTGGATGGACCTACATCTACGCCATAGGCGCCGATGATGAATACGG GAAAATAGGTCTTCAACTTTTACAAAAACATACAGAGAAAATGGATATCT GTTTGACAGGAGAAGTTTATATTCCCATAGATTCCAAAGACACGCAACGC ATTGCGAAAGAGATCGCTTTAGACATGCAGAAACAAGAAAATGCCACCGT TGTTGTTATGTTTAATTATGCATTGAAGTCTGGAGAATATATTTTGCATG AAGCTGAGAAACTGGGTTTGGATCGTTTGTATTTGACAGGAGAAGCTTGG AACCCTGAAGTGCTGTCAGCTACTAACATAACAAAAACTCAAATGGAATC CATACTGACCGTCTCTGTTGAGAATGGGAATCCAAATCAAGAGTTTCTTG ACTATGTTAACAAAACCATCAATTCGTGCTACGGTAAGGATATTTGGTTG AAACAGTATATTTTCCAACAATCTGGATGCTTAGTGACTTCCAATGATGC TTTTGGAAGACTCACTGGCAAAGATGCAAACAATGAAACTTGTGAAATCG AGAGTAACGAGATTTTGAAGCTAATCTTAAATGAAAATCCAAGTCAAATT AATAATTTGATCGATTTGGTTGATTCAGTCAGCCATGCGTTAGATGACGT CACATCAAAATACTGTCCATCATCTGCAACAAATTGTGGAGCTAATATCA ACCCAATCCAAGTCAACGAGGCTTTGAAAACAGTCGATTTTACCACTCGC CAAAACAAACCGTACAAGTATAATACCAAAGGAAGTCCTGTATATGTATC TTATTCCATCGAGCAAGTTCAATACAATAATAACACTGGCCAATTTAAAT ACAGACCTGTTGGACGCTGGGAATCTCAAAGAGAAAAGAGACTCAATATT GACAAAGCAAAGATTAGAATACCCTCTTGGTCGGGCAATGAAATGCCGAC TTCATCATGCAGTGAAAAATGTGTTGCAGGGGAAAAAATCACGGCTAAAC AACGTTGTTGTTGGAAATGTGAACGATGTCCCAAAGGTTCTATGAGCACC AAACCCAATAGTCTCCAATGTTCACCGTGTGCCGAGGGTTACCATACTAA GGATTTTATAAATTGTGAATTGACACCGATTAAACATATCACTTTGAAGG ACACTATTGGACTTACGACAACGATCATCAGCTGTATAGGAAtcgtttta atgtttttgtgtcTCTACTTGTTACGCTATTTGAAGGAAACTACTATCGT CAAATCAACAAAGCCTAGATTCATCATATTGTCTACTCTGCTAGTGATCG CATCCTTCAGTTACACCTTTCTACACTTGGTGATACCTTCTAGAGGAGTT TGCCGTATTCGATATATTTCCTTCCATGCTTTATTAACATTGTTCAGCTT GGTGCTTCTGTTGAAGAACAGATCTGTCTCCAGGTTCATTTCGAAGTTCG TTAATAATAAACAGAACAATACATTAGCCGACATTTTAATTTCAACTTTC ATTCTTACCCTGGAAACGATCATTCTGCTGACCTGGCAATTCATGGAAAG TTTTCCCATTACCAAAACTGAATCAAATTATGAAAGTTTTGAAGAATGTG AATTGCAATTCAGTTTGTATCGAATGTTGGCGTTCGTTTTACCATTCGTT ATAACNCAAAATTTGTTAGACGCGTggaacaaaaaattttgttcCGCGCG TCTAACGTTCAAAGGCACCGCAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070264-exon-scaffold_516-1491911889:293889..296374 | TCONS_00070264-exon-scaffold_516-1491911889:293889..296374 | Clytia hemisphaerica | exon |
TCONS_00070264-exon-scaffold_516-1510915933:293889..296374 | TCONS_00070264-exon-scaffold_516-1510915933:293889..296374 | Clytia hemisphaerica | exon |
TCONS_00070264-exon-scaffold_516-1575043694:293889..296374 | TCONS_00070264-exon-scaffold_516-1575043694:293889..296374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_516 | supercontig | scaffold_516:293889..296374 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00070264 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3) HSP 1 Score: 163.696 bits (413), Expect = 2.738e-41 Identity = 158/639 (24.73%), Postives = 291/639 (45.54%), Query Frame = -3
Query: 388 RXSIGGLIRVFAVKFAIE----TRKVATDLSIGYRIDDTCLNLPITMNRGIEIVNSHEQTTCLVTNQNTCSVSQQKTHAEQFVAVFGTFFSFSTIPLSSLLGAFHIPLLSYRASSPLLSKRTDHGTFYRSVASDESIIEALVDVIDQFGWTYIYAIGADDEYGKIGLQLLQKHTEKMDICLTGEVYIP--IDSKDTQRIAKEIALDMQKQENATVVVMFNYALKSGEYILHEAEKLGLDRLYLTGEAWNPEVLSATNITKTQMESILTVSVENGN-PN-QEFLDYVN--KTINSCYGKDIWLKQY--IFQQSGCLVTSNDAFGRLTGKDANNETCEIESNEILKLIL-NENPSQIN-------------NLIDLVDSVSHALDDVTSKYCPSSATNCGA-----NINPIQVNEALKTVDFTTRQNKPYKYNTKGSPVYVSYSIEQVQYNNNTGQFKYRPVGRWE--SQREKRLNIDKAKIRIPSWSG--NEMPTSSCSEKCVAGEK---ITAKQRCCWKCERCPKGSMSTKPNSLQCSPCAEGYHT-KDFINCELTPIKHITLKDTIGLTTTIISCIGIVXXXXXXXXXXXLKETTIVKSTKPRFIILSTLLVIASFSYTFLHLVIPSRGVCRIRYISF 2187
R + G + A+ FAIE + + +L++GYRI DTC + + + V ++ + + CS H +AV G S + +++LLG F+IP +SY +SS LLS + +F R++ +DE A+ D+I+ F W ++ I ADD+YG+ G++ ++ E+ DIC+ I D ++ Q + + I + A V+V+F+ I + +++L EAW L A + + +++ G P +EFL V+ K++++ + K+ W + + Q+ D F L G + + + S L +EN S + N+ V S++HAL D+ + G+ + QV + L+ ++FT + ++ G V +YSI + G ++ VG + +++ +RL I++ KI WSG E+P S+CS C+AG + I + CC++C CP G S + ++ C+ C + + + ++ +C I+ ++ + G+ T+ + +GI L L + + T IVK+T L ++ FS + + P CR+R +F
Sbjct: 62 RYNFRGFRWLQAMIFAIEEINSSPALLPNLTLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNCS-----EHIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQHVVEVI-----QNSTAKVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWASSSLIAMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCHLQEGAKGPLPVDTF--LRGHEESGDRFSNSSTAFRPLCTGDENISSVETPYIDYTHLRISYNVYLAVYSIAHALQDIYTCLPGRGLFTNGSCADIKKVEAWQVLKHLRHLNFTNNMGEQVTFDECGDLV-GNYSIINWHLSPEDGSIVFKEVGYYNVYAKKGERLFINEEKIL---WSGFSREVPFSNCSRDCLAGTRKGIIEGEPTCCFECVECPDGEYSDETDASACNKCPDDFWSNENHTSCIAKEIEFLSWTEPFGIALTLFAVLGIFLTAFVLGVFIKFRNTPIVKATNRELSYLLLFSLLCCFSSSLFFIGEPQDWTCRLRQPAF 684
The following BLAST results are available for this feature:
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